Rh1DG151100

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006388
Physical Location & Seq
Forward (+)
31578147 .. 31581573
3427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG151100.1

Sequence Viewer

Length: 402 bp
ATGAACAACTTTTCGAGTTATAACGTCATGGGTAGAGTCAGGAGTTTGTCACTTGTAAGCCACCTGAAGAAAGCAGTGAAGAAAGTGAGACTCATTTTGCTTGGCCTTAAACTACAGAGGTGGCGCATAGCTTCAGTTCTTGGATGCGCTGCAACTAAAAGCCGGTGTTTGAGCTTCAATGAAAGATTGGGTTTGGAGGGCTGCATAGAAGTTGATACATCTGATTATCAGAATAGCTCCCACTTGAGAAGAATTCATAGCACAATTAGTCGTTCTTCTTCGATTGATTATGAGGATGTTGATCAAAGGGCTGATGCTTTCATTGCTAATTTTCGACGGCAGCTCAGATTAGAGAGACAGGTTTCTCTGGAGCTACGCTACTGCCGGAGTGAGAGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

133

Amino Acids

15.34

Weight (kDa)

10.03

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 98 - 128 5.7e-12 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 21
AcsI RAATTY 1 cut(s) 252
AcuI CTGAAG 2 cut(s) 86, 117
AgsI TTSAA 1 cut(s) 178
AluBI AGCT 5 cut(s) 131, 174, 237, 343, 373
AluI AGCT 5 cut(s) 131, 174, 237, 343, 373
Alw26I GTCTC 2 cut(s) 82, 349
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 3 cut(s) 149, 201, 340
ApoI RAATTY 1 cut(s) 252
AspLEI GCGC 2 cut(s) 126, 149
BbvI GCAGC 3 cut(s) 136, 188, 352
BceAI ACGGC 1 cut(s) 353
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 2 cut(s) 82, 349
BfmI CTRYAG 1 cut(s) 113
BisI GCNGC 3 cut(s) 150, 202, 341
BlsI GCNGC 3 cut(s) 151, 203, 342
BmsI GCATC 2 cut(s) 134, 304
BpmI CTGGAG 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 265
BsaBI GATNNNNATC 1 cut(s) 300
Bse118I RCCGGY 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 321
Bse8I GATNNNNATC 1 cut(s) 300
BseGI GGATG 2 cut(s) 149, 301
BseJI GATNNNNATC 1 cut(s) 300
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 358
BseXI GCAGC 3 cut(s) 136, 188, 352
BshFI GGCC 1 cut(s) 105
BsiSI CCGG 2 cut(s) 163, 385
BsmAI GTCTC 2 cut(s) 82, 349
BsnI GGCC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 301
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 357
BsrDI GCAATG 1 cut(s) 321
BsrFI RCCGGY 1 cut(s) 162
BssAI RCCGGY 1 cut(s) 162
BssMI GATC 1 cut(s) 301
BstDEI CTNAG 1 cut(s) 344
BstF5I GGATG 2 cut(s) 149, 301
BstHHI GCGC 2 cut(s) 126, 149
BstKTI GATC 1 cut(s) 304
BstMAI GTCTC 2 cut(s) 82, 349
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstSFI CTRYAG 1 cut(s) 113
BstV1I GCAGC 3 cut(s) 136, 188, 352
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 2 cut(s) 149, 301
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
CfoI GCGC 2 cut(s) 126, 149
Cfr10I RCCGGY 1 cut(s) 162
CviAII CATG 1 cut(s) 28
DdeI CTNAG 1 cut(s) 344
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
Eco57I CTGAAG 2 cut(s) 86, 117
EcoRI GAATTC 1 cut(s) 252
FaeI CATG 1 cut(s) 31
FaiI YATR 6 cut(s) 21, 29, 128, 206, 258, 291
FatI CATG 1 cut(s) 27
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 3 cut(s) 150, 202, 341
FokI GGATG 2 cut(s) 156, 308
Fsp4HI GCNGC 3 cut(s) 150, 202, 341
GlaI GCGC 2 cut(s) 125, 148
GluI GCNGC 3 cut(s) 150, 202, 341
GsuI CTGGAG 1 cut(s) 389
HaeIII GGCC 1 cut(s) 105
HapII CCGG 2 cut(s) 163, 385
HhaI GCGC 2 cut(s) 126, 149
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 2 cut(s) 124, 147
HinP1I GCGC 2 cut(s) 124, 147
HinfI GANTC 2 cut(s) 36, 90
HpaII CCGG 2 cut(s) 163, 385
Hpy188I TCNGA 3 cut(s) 223, 231, 347
Hpy188III TCNNGA 2 cut(s) 40, 368
Hpy99I CGWCG 1 cut(s) 339
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 2 cut(s) 152, 204
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 1 cut(s) 344
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 2 cut(s) 124, 147
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 2 cut(s) 242, 370
LpnPI CCDG 6 cut(s) 25, 77, 176, 344, 353, 398
Lsp1109I GCAGC 3 cut(s) 136, 188, 352
LweI GCATC 2 cut(s) 134, 304
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 48
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 5 cut(s) 79, 91, 261, 267, 270
MluCI AATT 3 cut(s) 252, 264, 328
MlyI GAGTC 2 cut(s) 45, 84
MnlI CCTC 3 cut(s) 111, 190, 286
MseI TTAA 1 cut(s) 108
MspI CCGG 2 cut(s) 163, 385
MwoI GCNNNNNNNGC 1 cut(s) 323
NdeII GATC 1 cut(s) 301
NlaIII CATG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 48
PkrI GCNGC 3 cut(s) 151, 203, 342
PleI GAGTC 2 cut(s) 44, 84
PpsI GAGTC 2 cut(s) 44, 84
PsiI TTATAA 1 cut(s) 21
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 3 cut(s) 150, 202, 341
Sau3AI GATC 1 cut(s) 301
SchI GAGTC 2 cut(s) 45, 84
SetI ASST 9 cut(s) 27, 66, 122, 133, 176, 239, 345, 363, 375
SfaNI GCATC 2 cut(s) 134, 304
SfcI CTRYAG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 3 cut(s) 252, 264, 328
TaiI ACGT 1 cut(s) 27
TaqI TCGA 3 cut(s) 14, 281, 334
TasI AATT 3 cut(s) 252, 264, 328
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 3 cut(s) 149, 201, 340
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 4 cut(s) 17, 195, 245, 310
TspRI CASTG 1 cut(s) 81
XapI RAATTY 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.