FvH4_2g36750

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0006388
Physical Location & Seq
Forward (+)
26856144 .. 26856521
378 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36750.t1

Sequence Viewer

Length: 378 bp
ATGGCTAGAGTCCAGAACTTGTCACTTGTAAGCCACCTGAAGAGAGCAGTGAAGAAAGTTAGACTCATTCTGCTTGGCCTTAAACTACAGCGGTGGCGCGTCGCTTCAATTCTTGGATGTGCTGCAACTAAAAGGCGGAGTTTGAGCTTCAATGACAGATTTGGTTTGAAGGGCTGCATGGAAGAAGTTGATGCATCTGATGATCAGAATGGCTCACACTTGAGAAGAGTTCATAGCAGTATCAGTCGCTCTTCTTCGACTGATTATGAGGATGTTGATCAGAGAGCTGATGCATTCATTGCTAATTTTCGACGGCAGCTCAGATTAGAAAGACAGGTTTCTCTGGAGCTAAGGTACTGCCGGAGGGAGAGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

126

Amino Acids

14.5

Weight (kDa)

10.59

Isoelectric Point (pI)

61.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 90 - 121 5.8e-12 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 99
AciI CCGC 2 cut(s) 91, 136
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 1 cut(s) 356
AgsI TTSAA 3 cut(s) 108, 151, 169
AluBI AGCT 4 cut(s) 147, 287, 319, 349
AluI AGCT 4 cut(s) 147, 287, 319, 349
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 3 cut(s) 122, 174, 316
AspLEI GCGC 1 cut(s) 99
BbvI GCAGC 3 cut(s) 109, 161, 328
BceAI ACGGC 1 cut(s) 329
BclI TGATCA 2 cut(s) 202, 277
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 86
BisI GCNGC 3 cut(s) 123, 175, 317
BlsI GCNGC 3 cut(s) 124, 176, 318
BmsI GCATC 3 cut(s) 181, 203, 280
BpmI CTGGAG 1 cut(s) 365
Bpu10I CCTNAGC 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 241
BsaBI GATNNNNATC 1 cut(s) 276
BsaXI ACNNNNNCTCC 3 cut(s) 338, 355, 368
Bse3DI GCAATG 1 cut(s) 297
Bse8I GATNNNNATC 1 cut(s) 276
BseGI GGATG 2 cut(s) 122, 277
BseJI GATNNNNATC 1 cut(s) 276
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 334
BseXI GCAGC 3 cut(s) 109, 161, 328
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 78
BsiSI CCGG 1 cut(s) 361
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 1 cut(s) 78
Bsp143I GATC 2 cut(s) 202, 277
BspACI CCGC 2 cut(s) 91, 136
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 333
BspFNI CGCG 1 cut(s) 99
BspQI GCTCTTC 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 297
BssMI GATC 2 cut(s) 202, 277
Bst6I CTCTTC 3 cut(s) 35, 220, 256
BstAPI GCANNNNNTGC 1 cut(s) 299
BstDEI CTNAG 2 cut(s) 320, 350
BstF5I GGATG 2 cut(s) 122, 277
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 2 cut(s) 205, 280
BstMBI GATC 2 cut(s) 202, 277
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstSFI CTRYAG 1 cut(s) 86
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 3 cut(s) 109, 161, 328
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 2 cut(s) 122, 277
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
CfoI GCGC 1 cut(s) 99
CseI GACGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 355
CviAII CATG 1 cut(s) 178
CviJI RGCY 9 cut(s) 5, 33, 78, 147, 174, 213, 287, 319, 349
CviKI_1 RGCY 9 cut(s) 5, 33, 78, 147, 174, 213, 287, 319, 349
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 2 cut(s) 320, 350
DpnI GATC 2 cut(s) 204, 279
DpnII GATC 2 cut(s) 202, 277
Eam1104I CTCTTC 3 cut(s) 35, 220, 256
EarI CTCTTC 3 cut(s) 35, 220, 256
EciI GGCGGA 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 59
EcoT22I ATGCAT 2 cut(s) 196, 295
FaeI CATG 1 cut(s) 181
FaiI YATR 3 cut(s) 179, 234, 267
FatI CATG 1 cut(s) 177
FbaI TGATCA 2 cut(s) 202, 277
Fnu4HI GCNGC 3 cut(s) 123, 175, 317
FokI GGATG 2 cut(s) 129, 284
Fsp4HI GCNGC 3 cut(s) 123, 175, 317
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 98
GluI GCNGC 3 cut(s) 123, 175, 317
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 1 cut(s) 78
HapII CCGG 1 cut(s) 361
HgaI GACGC 1 cut(s) 88
HhaI GCGC 1 cut(s) 99
Hin1II CATG 1 cut(s) 181
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 2 cut(s) 9, 63
HpaII CCGG 1 cut(s) 361
Hpy188I TCNGA 4 cut(s) 199, 207, 282, 323
Hpy188III TCNNGA 2 cut(s) 13, 344
Hpy99I CGWCG 2 cut(s) 104, 315
HpyAV CCTTC 1 cut(s) 163
HpyCH4V TGCA 4 cut(s) 125, 177, 194, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpyF3I CTNAG 2 cut(s) 320, 350
Hsp92II CATG 1 cut(s) 181
HspAI GCGC 1 cut(s) 97
Ksp22I TGATCA 2 cut(s) 202, 277
Kzo9I GATC 2 cut(s) 202, 277
LguI GCTCTTC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 5 cut(s) 26, 50, 320, 329, 374
Lsp1109I GCAGC 3 cut(s) 109, 161, 328
LweI GCATC 3 cut(s) 181, 203, 280
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 21
MalI GATC 2 cut(s) 204, 279
MboI GATC 2 cut(s) 202, 277
MboII GAAGA 6 cut(s) 52, 64, 194, 237, 243, 246
MluCI AATT 2 cut(s) 108, 304
MlyI GAGTC 2 cut(s) 18, 57
MnlI CCTC 2 cut(s) 262, 357
Mph1103I ATGCAT 2 cut(s) 196, 295
MseI TTAA 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 91
MspI CCGG 1 cut(s) 361
Mva1269I GAATGC 1 cut(s) 293
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 299
NdeII GATC 2 cut(s) 202, 277
NlaIII CATG 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 21
NsiI ATGCAT 2 cut(s) 196, 295
PciSI GCTCTTC 1 cut(s) 256
PctI GAATGC 1 cut(s) 293
PkrI GCNGC 3 cut(s) 124, 176, 318
PleI GAGTC 2 cut(s) 17, 57
PpsI GAGTC 2 cut(s) 17, 57
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
SapI GCTCTTC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 3 cut(s) 123, 175, 317
Sau3AI GATC 2 cut(s) 202, 277
SchI GAGTC 2 cut(s) 18, 57
SetI ASST 7 cut(s) 39, 149, 289, 321, 339, 351, 356
SfaNI GCATC 3 cut(s) 181, 203, 280
SfcI CTRYAG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
Sse9I AATT 2 cut(s) 108, 304
SsiI CCGC 2 cut(s) 91, 136
SspMI CTAG 1 cut(s) 6
TaqI TCGA 2 cut(s) 257, 310
TasI AATT 2 cut(s) 108, 304
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 1 cut(s) 21
TseI GCWGC 3 cut(s) 122, 174, 316
Tsp45I GTSAC 1 cut(s) 21
TspDTI ATGAA 2 cut(s) 221, 286
TspRI CASTG 1 cut(s) 54
XspI CTAG 1 cut(s) 6
Zsp2I ATGCAT 2 cut(s) 196, 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.