Rh6AG448200

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0006388
Physical Location & Seq
Reverse (-)
63466506 .. 63466883
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG448200.1

Sequence Viewer

Length: 378 bp
ATGGGCAGAGTCAGGAGTTCGTCACTTGTTAGTCACCTGAAGAGAGCAGTGAAGAAAGTGAGACTCATTTTGCTTGGCCTTAAACTACAAAGGTGGCGCGTAGCTTCAATTCTTGGATGTGGTGCAACTAAAAGGCGGTGCTTGAGCTTCAATGACAGATTGGGTTTGCAGGGCTGCATAGAAGAAGTTGATACATCTGATGATCAGAATAGCTCACACTTGAGAAGAGTTCATAGCACAATCAGTCGTTCTTCTTCGATTGATTATGAGGATGTTGATCAAAGGGCTGATGCATTCATTGCTAATTTTCGACGGCAGCTCAGATTAGAGAGACAGGTTTCTCTGGAGCTAAGCTACTGCCGGAGGGAGAGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

125

Amino Acids

14.42

Weight (kDa)

10.33

Isoelectric Point (pI)

68.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 90 - 119 1.7e-11 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 99
AciI CCGC 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 59
AgsI TTSAA 2 cut(s) 108, 151
AluBI AGCT 6 cut(s) 104, 147, 213, 319, 349, 354
AluI AGCT 6 cut(s) 104, 147, 213, 319, 349, 354
Alw26I GTCTC 2 cut(s) 55, 325
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 2 cut(s) 174, 316
AspLEI GCGC 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 26
BbvI GCAGC 2 cut(s) 161, 328
BceAI ACGGC 1 cut(s) 329
BclI TGATCA 2 cut(s) 202, 277
BcoDI GTCTC 2 cut(s) 55, 325
BisI GCNGC 2 cut(s) 175, 317
BlpI GCTNAGC 1 cut(s) 350
BlsI GCNGC 2 cut(s) 176, 318
BmsI GCATC 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 365
Bpu1102I GCTNAGC 1 cut(s) 350
BpuEI CTTGAG 2 cut(s) 163, 241
BsaBI GATNNNNATC 1 cut(s) 276
BsaXI ACNNNNNCTCC 1 cut(s) 355
Bse3DI GCAATG 1 cut(s) 297
Bse8I GATNNNNATC 1 cut(s) 276
BseGI GGATG 2 cut(s) 122, 277
BseJI GATNNNNATC 1 cut(s) 276
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 334
BseXI GCAGC 2 cut(s) 161, 328
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 78
BsiSI CCGG 1 cut(s) 361
BsmAI GTCTC 2 cut(s) 55, 325
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 1 cut(s) 78
Bsp143I GATC 2 cut(s) 202, 277
Bsp1720I GCTNAGC 1 cut(s) 350
BspACI CCGC 1 cut(s) 136
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 333
BspFNI CGCG 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 297
BssMI GATC 2 cut(s) 202, 277
Bst6I CTCTTC 2 cut(s) 35, 220
BstAPI GCANNNNNTGC 1 cut(s) 299
BstDEI CTNAG 2 cut(s) 320, 350
BstF5I GGATG 2 cut(s) 122, 277
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 2 cut(s) 205, 280
BstMAI GTCTC 2 cut(s) 55, 325
BstMBI GATC 2 cut(s) 202, 277
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 161, 328
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 2 cut(s) 122, 277
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
CfoI GCGC 1 cut(s) 99
CviJI RGCY 9 cut(s) 78, 104, 147, 174, 213, 287, 319, 349, 354
CviKI_1 RGCY 9 cut(s) 78, 104, 147, 174, 213, 287, 319, 349, 354
DdeI CTNAG 2 cut(s) 320, 350
DpnI GATC 2 cut(s) 204, 279
DpnII GATC 2 cut(s) 202, 277
Eam1104I CTCTTC 2 cut(s) 35, 220
EarI CTCTTC 2 cut(s) 35, 220
Eco57I CTGAAG 1 cut(s) 59
EcoT22I ATGCAT 1 cut(s) 295
FaiI YATR 3 cut(s) 179, 234, 267
FbaI TGATCA 2 cut(s) 202, 277
Fnu4HI GCNGC 2 cut(s) 175, 317
FokI GGATG 2 cut(s) 129, 284
Fsp4HI GCNGC 2 cut(s) 175, 317
GlaI GCGC 1 cut(s) 98
GluI GCNGC 2 cut(s) 175, 317
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 1 cut(s) 78
HapII CCGG 1 cut(s) 361
HhaI GCGC 1 cut(s) 99
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 2 cut(s) 9, 63
HpaII CCGG 1 cut(s) 361
HphI GGTGA 1 cut(s) 26
Hpy188I TCNGA 3 cut(s) 199, 207, 323
Hpy188III TCNNGA 2 cut(s) 13, 344
Hpy99I CGWCG 1 cut(s) 315
HpyCH4V TGCA 4 cut(s) 125, 169, 177, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpyF3I CTNAG 2 cut(s) 320, 350
HspAI GCGC 1 cut(s) 97
Ksp22I TGATCA 2 cut(s) 202, 277
Kzo9I GATC 2 cut(s) 202, 277
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 5 cut(s) 50, 155, 320, 329, 374
Lsp1109I GCAGC 2 cut(s) 161, 328
LweI GCATC 1 cut(s) 280
MaeIII GTNAC 2 cut(s) 21, 32
MalI GATC 2 cut(s) 204, 279
MboI GATC 2 cut(s) 202, 277
MboII GAAGA 6 cut(s) 52, 64, 194, 237, 243, 246
MluCI AATT 2 cut(s) 108, 304
MlyI GAGTC 2 cut(s) 18, 57
MnlI CCTC 2 cut(s) 262, 357
Mph1103I ATGCAT 1 cut(s) 295
MseI TTAA 1 cut(s) 81
MspI CCGG 1 cut(s) 361
Mva1269I GAATGC 1 cut(s) 293
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 299
NdeII GATC 2 cut(s) 202, 277
NmuCI GTSAC 2 cut(s) 21, 32
NsiI ATGCAT 1 cut(s) 295
PctI GAATGC 1 cut(s) 293
PkrI GCNGC 2 cut(s) 176, 318
PleI GAGTC 2 cut(s) 17, 57
PpsI GAGTC 2 cut(s) 17, 57
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 2 cut(s) 175, 317
Sau3AI GATC 2 cut(s) 202, 277
SchI GAGTC 2 cut(s) 18, 57
SetI ASST 9 cut(s) 39, 95, 106, 149, 215, 321, 339, 351, 356
SfaNI GCATC 1 cut(s) 280
SmlI CTYRAG 2 cut(s) 142, 220
SmoI CTYRAG 2 cut(s) 142, 220
Sse9I AATT 2 cut(s) 108, 304
SsiI CCGC 1 cut(s) 136
TaqI TCGA 2 cut(s) 257, 310
TasI AATT 2 cut(s) 108, 304
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 2 cut(s) 21, 32
TseI GCWGC 2 cut(s) 174, 316
Tsp45I GTSAC 2 cut(s) 21, 32
TspDTI ATGAA 2 cut(s) 221, 286
TspRI CASTG 1 cut(s) 54
Zsp2I ATGCAT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.