Rh6DG448900

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0011937
Physical Location & Seq
Reverse (-)
62170026 .. 62171349
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG448900.1

Sequence Viewer

Length: 666 bp
ATGGCGCTGAGGACGAAGGAGATGATGAGGAGCGTGATGAAGAAAGTCGGAGACAAAAACCTAAACCCCCGATTGAAACAGGAGCTCAAGAAGAATCGCTTGCCCGACCCCAAAATCGTCATGGGCCGAGCCCAACGTGGCATCTTCGCCGGCCGCCACATCCAGTTCGGCAATAACGTCAGCGAAGACGGCGGCAACAAGACAAGGAGGAATTGGAAGCCAAATGTGCAGGAGAAGCGGCTCTTCAGTTACATCCTAGACCGCCAGATTCGAGTCAAAGTCACCACCCACGCTTTGCGTTGCATAGACAAGGCAGGTGGGATTGATGAGTACTTTCTCAAAACTCCATACCACAAGATGGACACCGAAATGGGCCTTGTCTGGAAAGCCAAAATTGAAAAGCTGTATGAAGAGGTTGGGCAGACAGGGGGATATGCTTTCCTACAACCTAAAGATGAACCCAAGGTTGAACAGGAATTTAAAGAACTAAAACTAGATGAGAGGGAAGTCAAGAGACAGATGTATGGTTGGTCGAAGAAACTAAAACAGATTGAGGAACGAAAAGACAACCAAATCAGTGATAAAGAAGCTCATGAGGAAGGTGCAGGAATAGGGGAAGCAAGCTCTCACGTAGAGGATCATGAGCAGTTGGTTGCAAACTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L28

Protein Analysis

221

Amino Acids

25.71

Weight (kDa)

9.43

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L28 PF00830 47 - 105 9.3e-23 Ribosomal L28 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011937)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31460
fragaria_vesca FvH4_2g36661 FvH4_2g36661 FvH4_7g03740
malus_domestica MD08G1128100.v1.1 MD15G1107600.v1.1
prunus_persica Prupe.1G459900_v2.0.a1
pyrus_communis pycom15g09830
rosa_chinensis RchiOBHm_Chr6g0305011
rosa_laevigata RLG00000010928
rosa_multiflora Rmu_sc0023888.1_g000003 Rmu_sc0028342.1_g000006
rosa_roxburghii Rroxscaffold_7G00163260
rosa_rugosa Rorug06G0336700
rosa_samantha Rh6AG448300 Rh6BG452600 Rh6CG462000 Rh6DG448900
rosa_wichuraiana Rw6G039040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 305
Acc36I ACCTGC 1 cut(s) 305
AccB7I CCANNNNNTGG 1 cut(s) 358
AciI CCGC 4 cut(s) 154, 192, 238, 262
AclWI GGATC 1 cut(s) 645
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 1 cut(s) 476
AcuI CTGAAG 1 cut(s) 229
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 358
AgsI TTSAA 3 cut(s) 76, 398, 470
AluBI AGCT 4 cut(s) 85, 403, 590, 624
AluI AGCT 4 cut(s) 85, 403, 590, 624
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 2 cut(s) 45, 508
AlwI GGATC 1 cut(s) 645
AoxI GGCC 3 cut(s) 124, 151, 373
ApoI RAATTY 1 cut(s) 476
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 124, 373
AsuHPI GGTGA 1 cut(s) 274
BanII GRGCYC 2 cut(s) 87, 133
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 87
BbvCI CCTCAGC 1 cut(s) 8
BccI CCATC 1 cut(s) 352
BceAI ACGGC 1 cut(s) 205
BcoDI GTCTC 2 cut(s) 45, 508
BfaI CTAG 2 cut(s) 257, 494
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 305
BisI GCNGC 3 cut(s) 154, 193, 239
BlsI GCNGC 3 cut(s) 155, 194, 240
BmcAI AGTACT 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 124, 373
BmsI GCATC 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 192
Bpu10I CCTNAGC 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 631
BsaJI CCNNGG 1 cut(s) 462
Bsc4I CCNNNNNNNGG 1 cut(s) 358
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 462
BseGI GGATG 2 cut(s) 159, 252
BseLI CCNNNNNNNGG 1 cut(s) 358
BseNI ACTGG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 43
BseX3I CGGCCG 1 cut(s) 151
BsgI GTGCAG 2 cut(s) 248, 624
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 3 cut(s) 126, 153, 375
BsiEI CGRYCG 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 358
BsmAI GTCTC 2 cut(s) 45, 508
BsnI GGCC 3 cut(s) 126, 153, 375
Bsp1286I GDGCHC 2 cut(s) 87, 133
Bsp143I GATC 1 cut(s) 637
BspACI CCGC 4 cut(s) 154, 192, 238, 262
BspANI GGCC 3 cut(s) 126, 153, 375
BspHI TCATGA 2 cut(s) 592, 640
BspMI ACCTGC 1 cut(s) 305
BspPI GGATC 1 cut(s) 645
BspQI GCTCTTC 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 1 cut(s) 163
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 462
BssMI GATC 1 cut(s) 637
BssT1I CCWWGG 1 cut(s) 462
Bst6I CTCTTC 2 cut(s) 248, 405
BstBAI YACGTR 1 cut(s) 631
BstC8I GCNNGC 3 cut(s) 101, 151, 622
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 2 cut(s) 159, 252
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 640
BstMAI GTCTC 2 cut(s) 45, 508
BstMBI GATC 1 cut(s) 637
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 3 cut(s) 189, 226, 235
BstV2I GAAGAC 1 cut(s) 192
BstZI CGGCCG 1 cut(s) 151
BsuRI GGCC 3 cut(s) 126, 153, 375
BtsCI GGATG 2 cut(s) 159, 252
BtsIMutI CAGTG 1 cut(s) 583
BveI ACCTGC 1 cut(s) 305
Cac8I GCNNGC 3 cut(s) 101, 151, 622
CciI TCATGA 2 cut(s) 592, 640
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 124, 373
Csp6I GTAC 1 cut(s) 331
CspCI CAANNNNNGTGG 2 cut(s) 298, 333
CviAII CATG 3 cut(s) 121, 593, 641
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 1 cut(s) 8
DpnI GATC 1 cut(s) 639
DpnII GATC 1 cut(s) 637
DraI TTTAAA 1 cut(s) 481
EaeI YGGCCR 1 cut(s) 151
EagI CGGCCG 1 cut(s) 151
Eam1104I CTCTTC 2 cut(s) 248, 405
EarI CTCTTC 2 cut(s) 248, 405
Ecl136II GAGCTC 1 cut(s) 85
EclXI CGGCCG 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 462
Eco24I GRGCYC 2 cut(s) 87, 133
Eco52I CGGCCG 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 462
EcoT38I GRGCYC 2 cut(s) 87, 133
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 3 cut(s) 124, 596, 644
FaiI YATR 8 cut(s) 122, 305, 349, 408, 435, 525, 594, 642
FalI AAGNNNNNCTT 4 cut(s) 83, 115, 227, 259
FatI CATG 3 cut(s) 120, 592, 640
Fnu4HI GCNGC 3 cut(s) 154, 193, 239
FokI GGATG 2 cut(s) 146, 239
FriOI GRGCYC 2 cut(s) 87, 133
Fsp4HI GCNGC 3 cut(s) 154, 193, 239
FspBI CTAG 2 cut(s) 257, 494
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 154, 193, 239
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 126, 153, 375
HapII CCGG 1 cut(s) 150
HhaI GCGC 1 cut(s) 7
Hin1II CATG 3 cut(s) 124, 596, 644
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 3 cut(s) 94, 268, 273
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 274
Hpy188I TCNGA 1 cut(s) 50
Hpy188III TCNNGA 6 cut(s) 88, 382, 511, 593, 641, 663
HpyAV CCTTC 2 cut(s) 10, 593
HpyCH4IV ACGT 3 cut(s) 136, 177, 630
HpyCH4V TGCA 4 cut(s) 229, 303, 605, 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 189, 226, 235
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 3 cut(s) 136, 177, 630
Hsp92II CATG 3 cut(s) 124, 596, 644
HspAI GCGC 1 cut(s) 5
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Kzo9I GATC 1 cut(s) 637
LguI GCTCTTC 1 cut(s) 248
LmnI GCTCC 2 cut(s) 30, 82
LweI GCATC 1 cut(s) 150
MaeI CTAG 2 cut(s) 257, 494
MaeII ACGT 3 cut(s) 136, 177, 630
MaeIII GTNAC 2 cut(s) 248, 280
MalI GATC 1 cut(s) 639
MboI GATC 1 cut(s) 637
MboII GAAGA 7 cut(s) 52, 103, 136, 197, 235, 422, 547
MhlI GDGCHC 2 cut(s) 87, 133
MluCI AATT 3 cut(s) 211, 393, 476
MlyI GAGTC 1 cut(s) 282
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 8 cut(s) 3, 21, 201, 406, 495, 547, 589, 628
MroNI GCCGGC 1 cut(s) 149
MseI TTAA 1 cut(s) 480
MslI CAYNNNNRTG 1 cut(s) 368
MspI CCGG 1 cut(s) 150
MwoI GCNNNNNNNGC 3 cut(s) 189, 226, 235
NaeI GCCGGC 1 cut(s) 151
NdeII GATC 1 cut(s) 637
NgoMIV GCCGGC 1 cut(s) 149
NlaIII CATG 3 cut(s) 124, 596, 644
NmeAIII GCCGAG 1 cut(s) 152
NmuCI GTSAC 1 cut(s) 280
PagI TCATGA 2 cut(s) 592, 640
PaqCI CACCTGC 1 cut(s) 305
PciSI GCTCTTC 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PdiI GCCGGC 1 cut(s) 151
PfeI GAWTC 2 cut(s) 94, 268
PflMI CCANNNNNTGG 1 cut(s) 358
PkrI GCNGC 3 cut(s) 155, 194, 240
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
Ppu21I YACGTR 1 cut(s) 631
Psp124BI GAGCTC 1 cut(s) 87
PspPI GGNCC 2 cut(s) 124, 373
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
RseI CAYNNNNRTG 1 cut(s) 368
SacI GAGCTC 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 248
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 3 cut(s) 154, 193, 239
Sau3AI GATC 1 cut(s) 637
Sau96I GGNCC 2 cut(s) 124, 373
ScaI AGTACT 1 cut(s) 332
SchI GAGTC 1 cut(s) 282
SduI GDGCHC 2 cut(s) 87, 133
SfaNI GCATC 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 3 cut(s) 211, 393, 476
SsiI CCGC 4 cut(s) 154, 192, 238, 262
SspMI CTAG 2 cut(s) 257, 494
SstI GAGCTC 1 cut(s) 87
StyI CCWWGG 1 cut(s) 462
TaiI ACGT 3 cut(s) 139, 180, 633
TaqI TCGA 2 cut(s) 271, 533
TasI AATT 3 cut(s) 211, 393, 476
TatI WGTACW 1 cut(s) 330
TauI GCSGC 3 cut(s) 156, 195, 241
TfiI GAWTC 2 cut(s) 94, 268
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 1 cut(s) 583
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 3 cut(s) 53, 423, 471
TspRI CASTG 1 cut(s) 583
Van91I CCANNNNNTGG 1 cut(s) 358
XapI RAATTY 1 cut(s) 476
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XspI CTAG 2 cut(s) 257, 494
ZrmI AGTACT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.