MD15G1107600.v1.1

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011937
Physical Location & Seq
Forward (+)
7519062 .. 7520755
1694 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1107600.v1.1.491

Sequence Viewer

Length: 717 bp
ATGGCGTCGGTGAGGGGGAAGGAGACGATCAAGAGCGTGATGAAGAAGTTCAGCGACAAAACCCTAACGCCGCGGCTGAAGGAGGAGCTGAAGAAGAAAGGCACCATGGGAAGCAAAACTCTACCCACCCGATTGAGAGAGGAGCTCAAGAAGAAAGGCATACCCGATTCGAATATCATCATGGGTCGGGCCAAGCGCGGCATCTACGCCGGCCGCCACATCCAGTTCGGCAACCAAATCAGCGAAGACGGCGGCAACAAGTCGAGGAGGACATGGAAACCAAATGTGCAGGAGAAGCGGCTCTTCAGTTACATCCTAGACCGCCACATTCGAGTCAAAGTCACTACCCATGCTCTCCGTTGCGTAGACAAGGCAGGTGGGATTGATGAGTATTTTCTGAAAACTCCTTACCAAAAGATGGATACGGAAATGGGCCTTGTCTGGAAAGCCAGAATTGAAAAGCTATATGAGGATGTTGGGCACAGGCAAGTTGCGTTTATTAAACCTGAAGCTGAACCCGAAGCCAACTTGGAACAGGGATTCAAAAACCTAAAAATAGATGAGAGGGAAGTCAAGAGACAAATGTATGGTTGGTCGAAGAAACTAAAACAGATCGAGGATGGAGCGAACAAACAAGTAGCTGATGTCATAGACGCAAAGGTCGAGGTAGGAATCTCTCATGTTGATGTTCCTGAGCAGTTGGTCGCAAACTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L28

Protein Analysis

239

Amino Acids

27.28

Weight (kDa)

9.77

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L28 PF00830 66 - 124 7.1e-22 Ribosomal L28 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011937)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31460
fragaria_vesca FvH4_2g36661 FvH4_2g36661 FvH4_7g03740
malus_domestica MD08G1128100.v1.1 MD15G1107600.v1.1
prunus_persica Prupe.1G459900_v2.0.a1
pyrus_communis pycom15g09830
rosa_chinensis RchiOBHm_Chr6g0305011
rosa_laevigata RLG00000010928
rosa_multiflora Rmu_sc0023888.1_g000003 Rmu_sc0028342.1_g000006
rosa_roxburghii Rroxscaffold_7G00163260
rosa_rugosa Rorug06G0336700
rosa_samantha Rh6AG448300 Rh6BG452600 Rh6CG462000 Rh6DG448900
rosa_wichuraiana Rw6G039040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 365
AasI GACNNNNNNGTC 1 cut(s) 659
Acc36I ACCTGC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 418
AccI GTMKAC 1 cut(s) 366
AccII CGCG 2 cut(s) 73, 198
AciI CCGC 7 cut(s) 71, 73, 198, 214, 252, 298, 322
AcoI YGGCCR 1 cut(s) 211
AcuI CTGAAG 4 cut(s) 98, 110, 289, 528
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 418
AgsI TTSAA 2 cut(s) 458, 544
AluBI AGCT 5 cut(s) 88, 145, 463, 512, 641
AluI AGCT 5 cut(s) 88, 145, 463, 512, 641
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 2 cut(s) 17, 571
AoxI GGCC 3 cut(s) 189, 211, 433
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 2 cut(s) 189, 433
AsuHPI GGTGA 1 cut(s) 22
AsuII TTCGAA 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 483
BanI GGYRCC 1 cut(s) 101
BanII GRGCYC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 147
BccI CCATC 2 cut(s) 412, 614
BceAI ACGGC 1 cut(s) 265
BciVI GTATCC 1 cut(s) 415
BcoDI GTCTC 2 cut(s) 17, 571
BfaI CTAG 1 cut(s) 317
BfuAI ACCTGC 1 cut(s) 365
BfuI GTATCC 1 cut(s) 415
BisI GCNGC 6 cut(s) 71, 74, 199, 214, 253, 299
BlsI GCNGC 6 cut(s) 72, 75, 200, 215, 254, 300
BmgT120I GGNCC 2 cut(s) 189, 433
BmiI GGNNCC 1 cut(s) 103
BmsI GCATC 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 252
BplI GAGNNNNNCTC 2 cut(s) 129, 161
Bpu10I CCTNAGC 1 cut(s) 693
Bpu14I TTCGAA 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 71, 105
Bsc4I CCNNNNNNNGG 1 cut(s) 418
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 223
BseDI CCNNGG 2 cut(s) 71, 105
BseGI GGATG 4 cut(s) 219, 312, 478, 625
BseLI CCNNNNNNNGG 1 cut(s) 418
BseMII CTCAG 1 cut(s) 684
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 3 cut(s) 98, 155, 280
BseSI GKGCMC 1 cut(s) 483
BseX3I CGGCCG 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 308
Bsh1236I CGCG 2 cut(s) 73, 198
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 3 cut(s) 191, 213, 435
BshNI GGYRCC 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 418
BsmAI GTCTC 2 cut(s) 17, 571
BsmBI CGTCTC 1 cut(s) 17
BsnI GGCC 3 cut(s) 191, 213, 435
Bsp119I TTCGAA 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 147, 483
Bsp143I GATC 2 cut(s) 27, 612
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 7 cut(s) 71, 73, 198, 214, 252, 298, 322
BspANI GGCC 3 cut(s) 191, 213, 435
BspCNI CTCAG 1 cut(s) 685
BspFNI CGCG 2 cut(s) 73, 198
BspLI GGNNCC 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 365
BspQI GCTCTTC 1 cut(s) 308
BspT104I TTCGAA 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 71, 105
BssMI GATC 2 cut(s) 27, 612
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 308
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 693
BstDSI CCRYGG 2 cut(s) 71, 105
BstF5I GGATG 4 cut(s) 219, 312, 478, 625
BstFNI CGCG 2 cut(s) 73, 198
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 2 cut(s) 30, 615
BstMAI GTCTC 2 cut(s) 17, 571
BstMBI GATC 2 cut(s) 27, 612
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 2 cut(s) 249, 295
BstSLI GKGCMC 1 cut(s) 483
BstUI CGCG 2 cut(s) 73, 198
BstV2I GAAGAC 1 cut(s) 252
BstZI CGGCCG 1 cut(s) 211
BsuI GTATCC 1 cut(s) 415
BsuRI GGCC 3 cut(s) 191, 213, 435
BtgI CCRYGG 2 cut(s) 71, 105
BtsCI GGATG 4 cut(s) 219, 312, 478, 625
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 1 cut(s) 211
CfoI GCGC 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 2 cut(s) 189, 433
Cfr42I CCGCGG 1 cut(s) 74
CseI GACGC 1 cut(s) 662
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
CviAII CATG 5 cut(s) 106, 181, 273, 350, 680
DdeI CTNAG 1 cut(s) 693
DpnI GATC 2 cut(s) 29, 614
DpnII GATC 2 cut(s) 27, 612
DrdI GACNNNNNNGTC 1 cut(s) 659
DseDI GACNNNNNNGTC 1 cut(s) 659
EaeI YGGCCR 1 cut(s) 211
EagI CGGCCG 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Ecl136II GAGCTC 1 cut(s) 145
EclXI CGGCCG 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 147
Eco52I CGGCCG 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 145
Eco57I CTGAAG 4 cut(s) 98, 110, 289, 528
EcoICRI GAGCTC 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 17
FaeI CATG 5 cut(s) 109, 184, 276, 353, 683
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FatI CATG 5 cut(s) 105, 180, 272, 349, 679
FblI GTMKAC 1 cut(s) 366
Fnu4HI GCNGC 6 cut(s) 71, 74, 199, 214, 253, 299
FokI GGATG 4 cut(s) 206, 299, 485, 632
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 6 cut(s) 71, 74, 199, 214, 253, 299
FspBI CTAG 1 cut(s) 317
GlaI GCGC 1 cut(s) 197
GluI GCNGC 6 cut(s) 71, 74, 199, 214, 253, 299
HaeIII GGCC 3 cut(s) 191, 213, 435
HapII CCGG 1 cut(s) 210
HgaI GACGC 1 cut(s) 662
HhaI GCGC 1 cut(s) 198
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 109, 184, 276, 353, 683
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HinfI GANTC 4 cut(s) 167, 333, 540, 672
HpaII CCGG 1 cut(s) 210
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 1 cut(s) 399
Hpy188III TCNNGA 6 cut(s) 31, 148, 442, 574, 692, 714
Hpy8I GTNNAC 1 cut(s) 367
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 13, 73
HpyCH4V TGCA 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 295
HpyF3I CTNAG 1 cut(s) 693
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 109, 184, 276, 353, 683
HspAI GCGC 1 cut(s) 196
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
KspI CCGCGG 1 cut(s) 74
Kzo9I GATC 2 cut(s) 27, 612
LguI GCTCTTC 1 cut(s) 308
LmnI GCTCC 3 cut(s) 85, 142, 623
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 317
MaeIII GTNAC 2 cut(s) 308, 340
MalI GATC 2 cut(s) 29, 614
MboI GATC 2 cut(s) 27, 612
MboII GAAGA 7 cut(s) 55, 103, 106, 163, 257, 295, 610
MhlI GDGCHC 2 cut(s) 147, 483
MluCI AATT 1 cut(s) 453
MlyI GAGTC 1 cut(s) 342
MnlI CCTC 9 cut(s) 6, 76, 133, 258, 261, 463, 558, 610, 658
MroNI GCCGGC 1 cut(s) 209
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 1 cut(s) 501
MslI CAYNNNNRTG 1 cut(s) 684
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 1 cut(s) 210
MvnI CGCG 2 cut(s) 73, 198
MwoI GCNNNNNNNGC 2 cut(s) 249, 295
NaeI GCCGGC 1 cut(s) 211
NcoI CCATGG 1 cut(s) 105
NdeII GATC 2 cut(s) 27, 612
NgoMIV GCCGGC 1 cut(s) 209
NlaIII CATG 5 cut(s) 109, 184, 276, 353, 683
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 340
NspV TTCGAA 1 cut(s) 170
PaqCI CACCTGC 1 cut(s) 365
PciSI GCTCTTC 1 cut(s) 308
PcsI WCGNNNNNNNCGW 1 cut(s) 660
PdiI GCCGGC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 3 cut(s) 167, 540, 672
PflMI CCANNNNNTGG 1 cut(s) 418
PkrI GCNGC 6 cut(s) 72, 75, 200, 215, 254, 300
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 2 cut(s) 189, 433
RseI CAYNNNNRTG 1 cut(s) 684
SacI GAGCTC 1 cut(s) 147
SacII CCGCGG 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 308
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 6 cut(s) 71, 74, 199, 214, 253, 299
Sau3AI GATC 2 cut(s) 27, 612
Sau96I GGNCC 2 cut(s) 189, 433
SchI GAGTC 1 cut(s) 342
SduI GDGCHC 2 cut(s) 147, 483
SfaNI GCATC 1 cut(s) 210
Sfr303I CCGCGG 1 cut(s) 74
SfuI TTCGAA 1 cut(s) 170
SgrBI CCGCGG 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 684
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 1 cut(s) 453
SsiI CCGC 7 cut(s) 71, 73, 198, 214, 252, 298, 322
SspMI CTAG 1 cut(s) 317
SstI GAGCTC 1 cut(s) 147
StyI CCWWGG 1 cut(s) 105
TaqI TCGA 6 cut(s) 170, 263, 331, 596, 615, 663
TasI AATT 1 cut(s) 453
TauI GCSGC 6 cut(s) 73, 76, 201, 216, 255, 301
TfiI GAWTC 3 cut(s) 167, 540, 672
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TseFI GTSAC 1 cut(s) 340
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 1 cut(s) 56
TspGWI ACGGA 2 cut(s) 347, 440
Van91I CCANNNNNTGG 1 cut(s) 418
XmiI GTMKAC 1 cut(s) 366
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.