AT4G31560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011489
Physical Location & Seq
Forward (+)
15295138 .. 15296310
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31560.1

Sequence Viewer

Length: 414 bp
ATGGCGAGACTTTTCGTCTCTATCCCTATGCAACCCACACAAATAAGCTTCCCTGCGTCTTCTTCTCAGCCACTATTATCTCCGCCGGCGAACAATTTCACCGATGGTGGAGCTGGGGGATTATGTCTTACACGGAGAATCAGAGACAGTTCCGTGGTGACGCGAGCAGGGCCTAGTACGAGCAGCTACTTGCTCGCGTTCGCCATTCCTGCTACTCTTATCGCCGCCACTGTCTTCACTTCAATCAAAATCGCTGACAAACTCGACGAAGATTTCCTTGAGGATATTGCGTTGAACCAAGCGATAAAAGCAGCAGAAAAGGGAGAGAATGGAGAAGGTGATATCTCACTGGACGATGTGATTCAAGAACCTGTGCTTCAACGAACACGTAACCGGCCTAAACGTGAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.7

Weight (kDa)

5.11

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31560
fragaria_vesca FvH4_7g02100 FvH4_7g02100 FvH4_7g02100
malus_domestica MD02G1297000.v1.1 MD07G1027000.v1.1
prunus_persica Prupe.2G027100_v2.0.a1 Prupe.2G027100_v2.0.a1
pyrus_communis pycom02g25020 pycom07g02080
rosa_chinensis RchiOBHm_Chr1g0319401
rosa_laevigata RLG00000030488
rosa_multiflora Rmu_sc0005870.1_g000007
rosa_roxburghii Rroxscaffold_4G00328500
rosa_rugosa Rorug01G0027400
rosa_samantha Rh1AG039700 Rh1BG036500 Rh1CG038600 Rh1DG031200
rosa_wichuraiana Rw1G003170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 163, 197
AciI CCGC 2 cut(s) 83, 225
AfaI GTAC 1 cut(s) 178
AflIII ACRYGT 1 cut(s) 386
AgsI TTSAA 4 cut(s) 243, 295, 365, 380
AhdI GACNNNNNGTC 1 cut(s) 14
AluBI AGCT 3 cut(s) 48, 113, 186
AluI AGCT 3 cut(s) 48, 113, 186
Alw26I GTCTC 2 cut(s) 22, 138
AoxI GGCC 2 cut(s) 170, 395
ApeKI GCWGC 2 cut(s) 183, 311
Asp700I GAANNNNTTC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 3 cut(s) 91, 169, 350
BbsI GAAGAC 2 cut(s) 51, 226
BbvI GCAGC 2 cut(s) 195, 323
BccI CCATC 1 cut(s) 98
BcoDI GTCTC 2 cut(s) 22, 138
BfaI CTAG 1 cut(s) 174
BisI GCNGC 3 cut(s) 184, 225, 312
BlsI GCNGC 3 cut(s) 185, 226, 313
BmeRI GACNNNNNGTC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 170
BpiI GAAGAC 2 cut(s) 51, 226
BpuEI CTTGAG 1 cut(s) 299
BsaAI YACGTR 1 cut(s) 389
BsaJI CCNNGG 1 cut(s) 153
Bse118I RCCGGY 2 cut(s) 85, 393
Bse1I ACTGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 354
BseXI GCAGC 2 cut(s) 195, 323
BseYI CCCAGC 1 cut(s) 113
Bsh1236I CGCG 2 cut(s) 163, 197
BshFI GGCC 2 cut(s) 172, 397
BsiSI CCGG 2 cut(s) 86, 394
BsmAI GTCTC 2 cut(s) 22, 138
BsmBI CGTCTC 1 cut(s) 22
BsnI GGCC 2 cut(s) 172, 397
BspACI CCGC 2 cut(s) 83, 225
BspANI GGCC 2 cut(s) 172, 397
BspCNI CTCAG 1 cut(s) 79
BspFNI CGCG 2 cut(s) 163, 197
BsrFI RCCGGY 2 cut(s) 85, 393
BsrI ACTGG 1 cut(s) 354
BssAI RCCGGY 2 cut(s) 85, 393
BssECI CCNNGG 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 149, 232
BstBAI YACGTR 1 cut(s) 389
BstC8I GCNNGC 3 cut(s) 87, 165, 195
BstDEI CTNAG 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 153
BstFNI CGCG 2 cut(s) 163, 197
BstMAI GTCTC 2 cut(s) 22, 138
BstMWI GCNNNNNNNGC 3 cut(s) 169, 209, 308
BstUI CGCG 2 cut(s) 163, 197
BstV1I GCAGC 2 cut(s) 195, 323
BstV2I GAAGAC 2 cut(s) 51, 226
BsuRI GGCC 2 cut(s) 172, 397
BtgI CCRYGG 1 cut(s) 153
BtsIMutI CAGTG 2 cut(s) 228, 347
Cac8I GCNNGC 3 cut(s) 87, 165, 195
Cfr10I RCCGGY 2 cut(s) 85, 393
Cfr13I GGNCC 1 cut(s) 170
CseI GACGC 2 cut(s) 45, 169
Csp6I GTAC 1 cut(s) 177
CviJI RGCY 6 cut(s) 48, 70, 113, 172, 186, 397
CviKI_1 RGCY 6 cut(s) 48, 70, 113, 172, 186, 397
CviQI GTAC 1 cut(s) 177
DdeI CTNAG 1 cut(s) 66
DriI GACNNNNNGTC 1 cut(s) 14
Eam1105I GACNNNNNGTC 1 cut(s) 14
EciI GGCGGA 1 cut(s) 72
Eco32I GATATC 1 cut(s) 343
EcoO109I RGGNCCY 1 cut(s) 170
EcoRV GATATC 1 cut(s) 343
Esp3I CGTCTC 1 cut(s) 22
FaiI YATR 2 cut(s) 29, 124
FalI AAGNNNNNCTT 2 cut(s) 261, 293
Fnu4HI GCNGC 3 cut(s) 184, 225, 312
Fsp4HI GCNGC 3 cut(s) 184, 225, 312
FspBI CTAG 1 cut(s) 174
GluI GCNGC 3 cut(s) 184, 225, 312
GsaI CCCAGC 1 cut(s) 117
HaeIII GGCC 2 cut(s) 172, 397
HapII CCGG 2 cut(s) 86, 394
HgaI GACGC 2 cut(s) 45, 169
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 2 cut(s) 138, 361
HpaII CCGG 2 cut(s) 86, 394
HphI GGTGA 3 cut(s) 91, 169, 350
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 1 cut(s) 365
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 329
HpyCH4III ACNGT 2 cut(s) 149, 232
HpyCH4IV ACGT 2 cut(s) 388, 403
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 3 cut(s) 169, 209, 308
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 2 cut(s) 388, 403
KroI GCCGGC 1 cut(s) 85
KroNI GCCGGC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 8 cut(s) 66, 99, 99, 153, 222, 335, 384, 407
Lsp1109I GCAGC 2 cut(s) 195, 323
MaeI CTAG 1 cut(s) 174
MaeII ACGT 2 cut(s) 388, 403
MaeIII GTNAC 2 cut(s) 157, 389
MboII GAAGA 4 cut(s) 51, 54, 226, 281
MluCI AATT 1 cut(s) 94
MnlI CCTC 1 cut(s) 274
MreI CGCCGGCG 1 cut(s) 85
MroNI GCCGGC 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 1 cut(s) 412
MspI CCGG 2 cut(s) 86, 394
MvnI CGCG 2 cut(s) 163, 197
MwoI GCNNNNNNNGC 3 cut(s) 169, 209, 308
NaeI GCCGGC 1 cut(s) 87
NgoMIV GCCGGC 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 157
PdiI GCCGGC 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 2 cut(s) 138, 361
PkrI GCNGC 3 cut(s) 185, 226, 313
Ppu21I YACGTR 1 cut(s) 389
PspFI CCCAGC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 170
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
SaqAI TTAA 1 cut(s) 412
SatI GCNGC 3 cut(s) 184, 225, 312
Sau96I GGNCC 1 cut(s) 170
SetI ASST 7 cut(s) 50, 115, 188, 340, 373, 391, 406
SgrAI CRCCGGYG 1 cut(s) 85
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 1 cut(s) 94
SsiI CCGC 2 cut(s) 83, 225
SspMI CTAG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 149, 232
TaiI ACGT 2 cut(s) 391, 406
TaqI TCGA 1 cut(s) 264
TasI AATT 1 cut(s) 94
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 2 cut(s) 138, 361
Tru1I TTAA 1 cut(s) 412
Tru9I TTAA 1 cut(s) 412
TscAI CASTG 2 cut(s) 235, 354
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 2 cut(s) 183, 311
Tsp45I GTSAC 1 cut(s) 157
TspGWI ACGGA 2 cut(s) 142, 148
TspRI CASTG 2 cut(s) 235, 354
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.