Rorug01G0027400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011489
Physical Location & Seq
Forward (+)
4705207 .. 4706094
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0027400.1

Sequence Viewer

Length: 888 bp
ATGTCTCTTACATTCTTCTCCAGGCTCATCAACAACTTCTCTCCAAACTCCATTATCTGTGTAGGTGGATTCGGTCCGATATACAAGGCTGAGCTCTCCAATGGCTCTACTGTGGCTTTGAAATATTTGGACTCAAATGCATTTGGAGGGTTCTCGTATATTCATGCTGAAATAAAAACAATAGGGAAGCTCCGCCATCCCAATCTTGTCAAGCTTCTAGGACGTTGCATGTCCAGTTCCGGCAGGTTTCTTGTTTATGAGTTCATCGAGAATGGTAGTCTCCACGAGTGGCTGCATGGACAGCGGGGAGTCCGAGATCCGATGGCATTGCCTTGGGAAACAAGAATGAAGATTGTGAAGGGTGTTGCTGATGCTCTTAAATATTTGCATGGATTGGAAAGACCAGTCATTCACAGGGATATAAAGGCCGGCCACGTGTTATTAGACTCTAATTTTGAGGCTCATCTTACTGATTTCGGGCTGGCTCGAATGCTGGAACCCTCAGAGACGCACTTGTCAACCTATATCAATGCTGGTTCTTTCTGGTATAGGCCACCGGAGTATTTATTCAGTAAGGCATCGTGGGCGACATTGAAAGGCGATGTATACAGCTTTGGAGTTTTGATGTTGGAGATAGCATCTGGGAAGCCTCCGAGTTCCATGGACATCCATCCTTCCTTCAGGTTACGGCTTCCTCAATGTGCCAAGAAGCTTGTTGCCCAAAACATGCACATGGATTTAGTGGATTCAAGGATTTTGAGGCAGGAATTAAACGAAGCTAGTGTTATAGAGTATTTTAGGATTGCTCTTAGTTGTCTCAAGAAAGACCCCAAGAAAAGACCTGAAATGAGTGAGGTTGTACAAATGTTGAATGAACTTCCCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

295

Amino Acids

33.38

Weight (kDa)

9.06

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 17 - 288 5.7e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 19 - 290 3.6e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31560
fragaria_vesca FvH4_7g02100 FvH4_7g02100 FvH4_7g02100
malus_domestica MD02G1297000.v1.1 MD07G1027000.v1.1
prunus_persica Prupe.2G027100_v2.0.a1 Prupe.2G027100_v2.0.a1
pyrus_communis pycom02g25020 pycom07g02080
rosa_chinensis RchiOBHm_Chr1g0319401
rosa_laevigata RLG00000030488
rosa_multiflora Rmu_sc0005870.1_g000007
rosa_roxburghii Rroxscaffold_4G00328500
rosa_rugosa Rorug01G0027400
rosa_samantha Rh1AG039700 Rh1BG036500 Rh1CG038600 Rh1DG031200
rosa_wichuraiana Rw1G003170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 514
Acc36I ACCTGC 1 cut(s) 234
AccI GTMKAC 1 cut(s) 606
AciI CCGC 2 cut(s) 193, 304
AclWI GGATC 1 cut(s) 311
AcoI YGGCCR 1 cut(s) 430
AcuI CTGAAG 1 cut(s) 664
AcvI CACGTG 1 cut(s) 436
AfaI GTAC 1 cut(s) 861
AflIII ACRYGT 1 cut(s) 435
AgsI TTSAA 4 cut(s) 121, 595, 750, 871
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 6 cut(s) 94, 190, 214, 612, 712, 779
AluI AGCT 6 cut(s) 94, 190, 214, 612, 712, 779
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 4 cut(s) 9, 284, 500, 821
AlwI GGATC 1 cut(s) 311
AoxI GGCC 3 cut(s) 426, 430, 551
ApeKI GCWGC 1 cut(s) 292
ArsI GACNNNNNNTTYG 2 cut(s) 437, 469
AspS9I GGNCC 1 cut(s) 74
AvaII GGWCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 96
BauI CACGAG 1 cut(s) 284
BbrPI CACGTG 1 cut(s) 436
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 279
BccI CCATC 3 cut(s) 204, 316, 678
BceAI ACGGC 1 cut(s) 704
BcgI CGANNNNNNTGC 2 cut(s) 310, 344
BciT130I CCWGG 1 cut(s) 22
BcoDI GTCTC 4 cut(s) 9, 284, 500, 821
BfaI CTAG 2 cut(s) 218, 780
BfuAI ACCTGC 1 cut(s) 234
BisI GCNGC 1 cut(s) 293
BlpI GCTNAGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 294
Bme1390I CCNGG 1 cut(s) 22
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 498
BmrFI CCNGG 1 cut(s) 22
BmsI GCATC 3 cut(s) 361, 587, 647
BpmI CTGGAG 1 cut(s) 4
Bpu1102I GCTNAGC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 803
BsaAI YACGTR 1 cut(s) 436
BsaJI CCNNGG 2 cut(s) 332, 660
BsaWI WCCGGW 1 cut(s) 556
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 2 cut(s) 234, 404
Bse3DI GCAATG 1 cut(s) 326
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 332, 660
BseGI GGATG 3 cut(s) 196, 666, 670
BseMI GCAATG 1 cut(s) 326
BseMII CTCAG 2 cut(s) 81, 516
BseNI ACTGG 2 cut(s) 234, 404
BseXI GCAGC 1 cut(s) 279
BshFI GGCC 3 cut(s) 428, 432, 553
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 3 cut(s) 240, 429, 557
BsmAI GTCTC 4 cut(s) 9, 284, 500, 821
BsmBI CGTCTC 1 cut(s) 500
BsmI GAATGC 1 cut(s) 495
BsnI GGCC 3 cut(s) 428, 432, 553
Bsp1286I GDGCHC 1 cut(s) 96
Bsp1407I TGTACA 1 cut(s) 859
Bsp143I GATC 1 cut(s) 316
Bsp1720I GCTNAGC 1 cut(s) 90
Bsp19I CCATGG 1 cut(s) 660
BspACI CCGC 2 cut(s) 193, 304
BspANI GGCC 3 cut(s) 428, 432, 553
BspCNI CTCAG 2 cut(s) 82, 515
BspLI GGNNCC 1 cut(s) 498
BspMI ACCTGC 1 cut(s) 234
BspPI GGATC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 326
BsrFI RCCGGY 1 cut(s) 428
BsrGI TGTACA 1 cut(s) 859
BsrI ACTGG 2 cut(s) 234, 404
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 2 cut(s) 332, 660
BssMI GATC 1 cut(s) 316
BssNAI GTATAC 1 cut(s) 607
BssSI CACGAG 1 cut(s) 284
BssT1I CCWWGG 2 cut(s) 332, 660
Bst1107I GTATAC 1 cut(s) 607
Bst2BI CACGAG 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 112
BstAUI TGTACA 1 cut(s) 859
BstBAI YACGTR 1 cut(s) 436
BstC8I GCNNGC 2 cut(s) 430, 483
BstDEI CTNAG 3 cut(s) 90, 502, 809
BstDSI CCRYGG 1 cut(s) 660
BstF5I GGATG 3 cut(s) 196, 666, 670
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 4 cut(s) 9, 284, 500, 821
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 2 cut(s) 301, 584
BstNI CCWGG 1 cut(s) 22
BstNSI RCATGY 2 cut(s) 232, 730
BstSCI CCNGG 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BstZ17I GTATAC 1 cut(s) 607
BsuRI GGCC 3 cut(s) 428, 432, 553
BtgI CCRYGG 1 cut(s) 660
BtgZI GCGATG 1 cut(s) 615
BtsCI GGATG 3 cut(s) 196, 666, 670
BveI ACCTGC 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 430, 483
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 1 cut(s) 74
CpoI CGGWCCG 1 cut(s) 74
CseI GACGC 1 cut(s) 517
Csp6I GTAC 1 cut(s) 860
CspI CGGWCCG 1 cut(s) 74
CviAII CATG 8 cut(s) 164, 229, 296, 389, 661, 727, 733, 883
CviQI GTAC 1 cut(s) 860
DdeI CTNAG 3 cut(s) 90, 502, 809
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
DrdI GACNNNNNNGTC 1 cut(s) 514
DseDI GACNNNNNNGTC 1 cut(s) 514
EaeI YGGCCR 1 cut(s) 430
EciI GGCGGA 1 cut(s) 182
Ecl136II GAGCTC 1 cut(s) 94
Eco130I CCWWGG 2 cut(s) 332, 660
Eco24I GRGCYC 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 74
Eco53kI GAGCTC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 664
Eco72I CACGTG 1 cut(s) 436
EcoICRI GAGCTC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 20
EcoT14I CCWWGG 2 cut(s) 332, 660
EcoT22I ATGCAT 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 2 cut(s) 332, 660
Esp3I CGTCTC 1 cut(s) 500
FaeI CATG 8 cut(s) 167, 232, 299, 392, 664, 730, 736, 886
FatI CATG 8 cut(s) 163, 228, 295, 388, 660, 726, 732, 882
FauI CCCGC 1 cut(s) 297
FblI GTMKAC 1 cut(s) 606
Fnu4HI GCNGC 1 cut(s) 293
FokI GGATG 3 cut(s) 183, 653, 657
FriOI GRGCYC 1 cut(s) 96
FseI GGCCGGCC 1 cut(s) 432
Fsp4HI GCNGC 1 cut(s) 293
FspBI CTAG 2 cut(s) 218, 780
GluI GCNGC 1 cut(s) 293
GsuI CTGGAG 1 cut(s) 4
HaeIII GGCC 3 cut(s) 428, 432, 553
HapII CCGG 3 cut(s) 240, 429, 557
HgaI GACGC 1 cut(s) 517
Hin1II CATG 8 cut(s) 167, 232, 299, 392, 664, 730, 736, 886
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HindIII AAGCTT 2 cut(s) 212, 710
HinfI GANTC 5 cut(s) 69, 131, 309, 446, 746
HpaII CCGG 3 cut(s) 240, 429, 557
Hpy166II GTNNAC 2 cut(s) 519, 607
Hpy188I TCNGA 5 cut(s) 78, 314, 321, 505, 654
Hpy188III TCNNGA 2 cut(s) 268, 820
Hpy8I GTNNAC 2 cut(s) 519, 607
HpyAV CCTTC 3 cut(s) 352, 684, 688
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 2 cut(s) 223, 435
HpyCH4V TGCA 5 cut(s) 140, 228, 295, 388, 730
HpyF10VI GCNNNNNNNGC 2 cut(s) 301, 584
HpyF3I CTNAG 3 cut(s) 90, 502, 809
HpySE526I ACGT 2 cut(s) 223, 435
Hsp92II CATG 8 cut(s) 167, 232, 299, 392, 664, 730, 736, 886
KroI GCCGGC 1 cut(s) 428
KroNI GCCGGC 1 cut(s) 430
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 1 cut(s) 195
Lsp1109I GCAGC 1 cut(s) 279
LweI GCATC 3 cut(s) 361, 587, 647
MaeI CTAG 2 cut(s) 218, 780
MaeII ACGT 2 cut(s) 223, 435
MaeIII GTNAC 1 cut(s) 684
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 2 cut(s) 7, 361
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 2 cut(s) 451, 767
MlyI GAGTC 3 cut(s) 125, 318, 440
MmeI TCCRAC 1 cut(s) 609
MnlI CCTC 7 cut(s) 140, 451, 511, 660, 705, 753, 847
Mph1103I ATGCAT 1 cut(s) 142
MroNI GCCGGC 1 cut(s) 428
MseI TTAA 2 cut(s) 378, 770
MslI CAYNNNNRTG 1 cut(s) 731
MspA1I CMGCKG 1 cut(s) 304
MspI CCGG 3 cut(s) 240, 429, 557
MspR9I CCNGG 1 cut(s) 22
Mva1269I GAATGC 1 cut(s) 495
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 2 cut(s) 301, 584
NaeI GCCGGC 1 cut(s) 430
NcoI CCATGG 1 cut(s) 660
NdeII GATC 1 cut(s) 316
NgoMIV GCCGGC 1 cut(s) 428
NlaIII CATG 8 cut(s) 167, 232, 299, 392, 664, 730, 736, 886
NlaIV GGNNCC 1 cut(s) 498
NsiI ATGCAT 1 cut(s) 142
NspI RCATGY 2 cut(s) 232, 730
PctI GAATGC 1 cut(s) 495
PdiI GCCGGC 1 cut(s) 430
PfeI GAWTC 2 cut(s) 69, 746
PkrI GCNGC 1 cut(s) 294
PleI GAGTC 3 cut(s) 125, 317, 440
PmaCI CACGTG 1 cut(s) 436
PmlI CACGTG 1 cut(s) 436
PpsI GAGTC 3 cut(s) 125, 317, 440
Ppu21I YACGTR 1 cut(s) 436
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 20
PspCI CACGTG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 498
PspPI GGNCC 1 cut(s) 74
PsuI RGATCY 1 cut(s) 316
RigI GGCCGGCC 1 cut(s) 432
RsaI GTAC 1 cut(s) 861
RsaNI GTAC 1 cut(s) 860
RseI CAYNNNNRTG 1 cut(s) 731
Rsr2I CGGWCCG 1 cut(s) 74
RsrII CGGWCCG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 96
SaqAI TTAA 2 cut(s) 378, 770
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 3 cut(s) 125, 318, 440
ScrFI CCNGG 1 cut(s) 22
SduI GDGCHC 1 cut(s) 96
SfaNI GCATC 3 cut(s) 361, 587, 647
SinI GGWCC 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 731
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
Sse9I AATT 2 cut(s) 451, 767
SsiI CCGC 2 cut(s) 193, 304
SspI AATATT 2 cut(s) 125, 383
SspMI CTAG 2 cut(s) 218, 780
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 20
StyI CCWWGG 2 cut(s) 332, 660
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 2 cut(s) 226, 438
TaqI TCGA 2 cut(s) 267, 487
TaqII GACCGA 1 cut(s) 62
TasI AATT 2 cut(s) 451, 767
TatI WGTACW 1 cut(s) 859
TfiI GAWTC 2 cut(s) 69, 746
Tru1I TTAA 2 cut(s) 378, 770
Tru9I TTAA 2 cut(s) 378, 770
TseI GCWGC 1 cut(s) 292
TspDTI ATGAA 4 cut(s) 152, 253, 362, 888
VpaK11BI GGWCC 1 cut(s) 74
XceI RCATGY 2 cut(s) 232, 730
XmiI GTMKAC 1 cut(s) 606
XspI CTAG 2 cut(s) 218, 780
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.