FvH4_7g02100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011489
Physical Location & Seq
Forward (+)
2447537 .. 2449246
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02100.t3

Sequence Viewer

Length: 414 bp
ATGGCAAAGCTTCTTCTCATCTCCAACGCCACCACCGCCTCTCTCACTCTCTCTCCTCCCTCACTCTTCTCGTCACGTGCTTCGTTCAAGCCTCCCCACGTGCCGCCGGTTCGGTTTCTTCTGGCCGGGAAACCACCCTCCAACAGCAAGAACAGCAGAGGCGTGACGGTGGTGACCAGGGCGGGCCCCACCACGCAGCAGTACCTGTTCGCTTTCTTTCTGCCGCTCTCCCTCATCGCCTTCACCGTCTTCACCTCCGTCCGGATCGCCGACAAGCTCGACCGAGACTACCTCGAGGAGGTTGCAATTAACCAAGCTATCAGGGAAACTGATGAGGATGATGAAGTTGACATGTCTCTGGAAGAAAAATCTGCCGTCCCACGAACTCGTAATCGTCCTAAAAGGGAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.2

Weight (kDa)

9.45

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31560
fragaria_vesca FvH4_7g02100 FvH4_7g02100 FvH4_7g02100
malus_domestica MD02G1297000.v1.1 MD07G1027000.v1.1
prunus_persica Prupe.2G027100_v2.0.a1 Prupe.2G027100_v2.0.a1
pyrus_communis pycom02g25020 pycom07g02080
rosa_chinensis RchiOBHm_Chr1g0319401
rosa_laevigata RLG00000030488
rosa_multiflora Rmu_sc0005870.1_g000007
rosa_roxburghii Rroxscaffold_4G00328500
rosa_rugosa Rorug01G0027400
rosa_samantha Rh1AG039700 Rh1BG036500 Rh1CG038600 Rh1DG031200
rosa_wichuraiana Rw1G003170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 293
AccBSI CCGCTC 1 cut(s) 226
AccIII TCCGGA 1 cut(s) 261
AciI CCGC 4 cut(s) 36, 104, 182, 224
AclWI GGATC 1 cut(s) 272
AcoI YGGCCR 1 cut(s) 123
AcvI CACGTG 2 cut(s) 77, 100
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 261, 298
AflIII ACRYGT 1 cut(s) 351
AgsI TTSAA 1 cut(s) 88
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 3 cut(s) 10, 277, 317
AluI AGCT 3 cut(s) 10, 277, 317
Alw26I GTCTC 2 cut(s) 279, 360
AlwI GGATC 1 cut(s) 272
AlwNI CAGNNNCTG 1 cut(s) 205
Ama87I CYCGRG 1 cut(s) 293
Aor13HI TCCGGA 1 cut(s) 261
AoxI GGCC 2 cut(s) 123, 184
ApaI GGGCCC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 196
AspS9I GGNCC 2 cut(s) 184, 185
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 3 cut(s) 184, 235, 244
AvaI CYCGRG 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 188
BbrPI CACGTG 2 cut(s) 77, 100
BbsI GAAGAC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 359
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BciT130I CCWGG 1 cut(s) 178
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 279, 360
BfaI CTAG 1 cut(s) 412
BisI GCNGC 3 cut(s) 104, 197, 224
BlsI GCNGC 3 cut(s) 105, 198, 225
Bme1390I CCNGG 2 cut(s) 127, 178
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 2 cut(s) 184, 185
BmiI GGNNCC 2 cut(s) 186, 187
BmrFI CCNGG 2 cut(s) 127, 178
BpiI GAAGAC 1 cut(s) 241
BplI GAGNNNNNCTC 2 cut(s) 276, 308
BpuMI CCSGG 1 cut(s) 127
BsaAI YACGTR 2 cut(s) 77, 100
BsaJI CCNNGG 1 cut(s) 177
BsaWI WCCGGW 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 298
Bse118I RCCGGY 1 cut(s) 106
BseAI TCCGGA 1 cut(s) 261
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 2 cut(s) 261, 298
BseRI GAGGAG 2 cut(s) 45, 311
BseSI GKGCMC 1 cut(s) 188
BseXI GCAGC 1 cut(s) 208
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 2 cut(s) 125, 186
BsiEI CGRYCG 1 cut(s) 283
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 3 cut(s) 107, 126, 262
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 2 cut(s) 261, 298
BsmAI GTCTC 2 cut(s) 279, 360
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 2 cut(s) 125, 186
BsoBI CYCGRG 1 cut(s) 293
Bsp120I GGGCCC 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 188
Bsp13I TCCGGA 1 cut(s) 261
Bsp143I GATC 1 cut(s) 264
BspACI CCGC 4 cut(s) 36, 104, 182, 224
BspANI GGCC 2 cut(s) 125, 186
BspEI TCCGGA 1 cut(s) 261
BspLI GGNNCC 2 cut(s) 186, 187
BspPI GGATC 1 cut(s) 272
BsrBI CCGCTC 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 2 cut(s) 169, 247
Bst6I CTCTTC 1 cut(s) 71
BstBAI YACGTR 2 cut(s) 77, 100
BstC8I GCNNGC 1 cut(s) 184
BstEII GGTNACC 1 cut(s) 172
BstENI CCTNNNNNAGG 1 cut(s) 296
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 2 cut(s) 279, 360
BstMBI GATC 1 cut(s) 264
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 2 cut(s) 35, 153
BstNI CCWGG 1 cut(s) 178
BstNSI RCATGY 1 cut(s) 355
BstPI GGTNACC 1 cut(s) 172
BstSCI CCNGG 2 cut(s) 125, 176
BstSLI GKGCMC 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 241
BsuRI GGCC 2 cut(s) 125, 186
BtgZI GCGATG 1 cut(s) 220
BtsCI GGATG 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 184
CaiI CAGNNNCTG 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 184, 185
Csp6I GTAC 1 cut(s) 202
CviAII CATG 1 cut(s) 352
CviJI RGCY 6 cut(s) 10, 91, 125, 186, 277, 317
CviKI_1 RGCY 6 cut(s) 10, 91, 125, 186, 277, 317
CviQI GTAC 1 cut(s) 202
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
EaeI YGGCCR 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 188
Eco72I CACGTG 2 cut(s) 77, 100
Eco88I CYCGRG 1 cut(s) 293
Eco91I GGTNACC 1 cut(s) 172
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 185
EcoO65I GGTNACC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 188
FaeI CATG 1 cut(s) 355
FaiI YATR 1 cut(s) 353
FaqI GGGAC 1 cut(s) 362
FatI CATG 1 cut(s) 351
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 3 cut(s) 104, 197, 224
FokI GGATG 1 cut(s) 350
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 3 cut(s) 104, 197, 224
FspBI CTAG 1 cut(s) 412
GluI GCNGC 3 cut(s) 104, 197, 224
HaeIII GGCC 2 cut(s) 125, 186
HapII CCGG 3 cut(s) 107, 126, 262
Hin1II CATG 1 cut(s) 355
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HindIII AAGCTT 1 cut(s) 8
HpaII CCGG 3 cut(s) 107, 126, 262
HphI GGTGA 3 cut(s) 184, 235, 244
Hpy166II GTNNAC 1 cut(s) 349
Hpy188III TCNNGA 2 cut(s) 262, 359
Hpy8I GTNNAC 1 cut(s) 349
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 2 cut(s) 169, 247
HpyCH4IV ACGT 2 cut(s) 76, 99
HpyCH4V TGCA 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 153
HpySE526I ACGT 2 cut(s) 76, 99
Hsp92II CATG 1 cut(s) 355
Kpn2I TCCGGA 1 cut(s) 261
Kzo9I GATC 1 cut(s) 264
LpnPI CCDG 9 cut(s) 107, 120, 139, 163, 190, 218, 275, 307, 344
Lsp1109I GCAGC 1 cut(s) 208
MaeI CTAG 1 cut(s) 412
MaeII ACGT 2 cut(s) 76, 99
MaeIII GTNAC 3 cut(s) 72, 163, 172
MalI GATC 1 cut(s) 266
MbiI CCGCTC 1 cut(s) 226
MboI GATC 1 cut(s) 264
MboII GAAGA 5 cut(s) 5, 58, 110, 241, 374
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 1 cut(s) 306
MmeI TCCRAC 2 cut(s) 48, 165
MroI TCCGGA 1 cut(s) 261
MseI TTAA 1 cut(s) 309
MspI CCGG 3 cut(s) 107, 126, 262
MspR9I CCNGG 2 cut(s) 127, 178
MvaI CCWGG 1 cut(s) 178
MwoI GCNNNNNNNGC 2 cut(s) 35, 153
NciI CCSGG 1 cut(s) 127
NdeII GATC 1 cut(s) 264
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 2 cut(s) 186, 187
NmuCI GTSAC 3 cut(s) 72, 163, 172
NspI RCATGY 1 cut(s) 355
PaeR7I CTCGAG 1 cut(s) 293
PciI ACATGT 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PkrI GCNGC 3 cut(s) 105, 198, 225
PmaCI CACGTG 2 cut(s) 77, 100
PmlI CACGTG 2 cut(s) 77, 100
Ppu21I YACGTR 2 cut(s) 77, 100
PscI ACATGT 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 176
PspCI CACGTG 2 cut(s) 77, 100
PspEI GGTNACC 1 cut(s) 172
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 2 cut(s) 186, 187
PspOMI GGGCCC 1 cut(s) 184
PspPI GGNCC 2 cut(s) 184, 185
PspXI VCTCGAGB 1 cut(s) 293
PstNI CAGNNNCTG 1 cut(s) 205
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 3 cut(s) 104, 197, 224
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 2 cut(s) 184, 185
ScrFI CCNGG 2 cut(s) 127, 178
SduI GDGCHC 1 cut(s) 188
SetI ASST 9 cut(s) 12, 79, 102, 207, 257, 279, 294, 303, 319
Sfr274I CTCGAG 1 cut(s) 293
SlaI CTCGAG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 1 cut(s) 306
SsiI CCGC 4 cut(s) 36, 104, 182, 224
SspMI CTAG 1 cut(s) 412
StyD4I CCNGG 2 cut(s) 125, 176
TaaI ACNGT 2 cut(s) 169, 247
TaiI ACGT 2 cut(s) 79, 102
TaqI TCGA 2 cut(s) 279, 294
TaqII GACCGA 1 cut(s) 297
TasI AATT 1 cut(s) 306
TauI GCSGC 2 cut(s) 106, 226
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 3 cut(s) 72, 163, 172
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 3 cut(s) 72, 163, 172
TspDTI ATGAA 1 cut(s) 357
TspGWI ACGGA 1 cut(s) 247
XagI CCTNNNNNAGG 1 cut(s) 296
XceI RCATGY 1 cut(s) 355
XhoI CTCGAG 1 cut(s) 293
XspI CTAG 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.