MD02G1297000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0011489
Physical Location & Seq
Forward (+)
35238396 .. 35239558
1163 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1297000.v1.1.491

Sequence Viewer

Length: 393 bp
ATGGCAAGGCTTCTCATCTCCAACACAGCCTCACTTACTCTCTCTCCTCCTCCACCCGCCCCACCCTCACGTGGTTCATTCATCCCTCCGCACGTGAACATATCGCCGGCGTCACGGTATCCCGGCCGGCAAACCAGAGGCCTAGAGGTGGTGACAGGTGCGGGGCCCACCACGAGCCAGTACGTGTTTGCATTCGTTTTGCCGCTCTCTCTGATCGCCGTCACCGTTTTCACTTCCATCAGAGTCGCCGATAAGCTCGACCGAGACTTTCTTGAAGAGATGGCAATTAACCAAGCGATCCGGGAAACGGATGAGGAAGGCGAACCTGACAAGTCGATAGAAGAAAAGCCTGCGCTTTCCGGTACTCGCAACCGGCCCAAGAGGGAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.15

Weight (kDa)

6.59

Isoelectric Point (pI)

49.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31560
fragaria_vesca FvH4_7g02100 FvH4_7g02100 FvH4_7g02100
malus_domestica MD02G1297000.v1.1 MD07G1027000.v1.1
prunus_persica Prupe.2G027100_v2.0.a1 Prupe.2G027100_v2.0.a1
pyrus_communis pycom02g25020 pycom07g02080
rosa_chinensis RchiOBHm_Chr1g0319401
rosa_laevigata RLG00000030488
rosa_multiflora Rmu_sc0005870.1_g000007
rosa_roxburghii Rroxscaffold_4G00328500
rosa_rugosa Rorug01G0027400
rosa_samantha Rh1AG039700 Rh1BG036500 Rh1CG038600 Rh1DG031200
rosa_wichuraiana Rw1G003170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 205
AciI CCGC 4 cut(s) 57, 89, 161, 203
AclWI GGATC 1 cut(s) 292
AcoI YGGCCR 1 cut(s) 124
AcvI CACGTG 2 cut(s) 71, 94
AcyI GRCGYC 1 cut(s) 110
AfaI GTAC 2 cut(s) 182, 364
AfiI CCNNNNNNNGG 3 cut(s) 71, 148, 307
AflIII ACRYGT 1 cut(s) 183
AgsI TTSAA 1 cut(s) 275
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 258
AlwI GGATC 1 cut(s) 292
AoxI GGCC 4 cut(s) 124, 139, 164, 374
ApaI GGGCCC 1 cut(s) 168
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 3 cut(s) 164, 165, 375
AsuC2I CCSGG 2 cut(s) 123, 302
AsuHPI GGTGA 2 cut(s) 163, 214
BaeGI GKGCMC 1 cut(s) 168
BanII GRGCYC 1 cut(s) 168
BauI CACGAG 1 cut(s) 172
BbrPI CACGTG 2 cut(s) 71, 94
BccI CCATC 2 cut(s) 245, 274
BceAI ACGGC 1 cut(s) 203
BciVI GTATCC 1 cut(s) 129
BcnI CCSGG 2 cut(s) 123, 302
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 1 cut(s) 143
BfuI GTATCC 1 cut(s) 129
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
Bme1390I CCNGG 2 cut(s) 123, 302
BmgT120I GGNCC 3 cut(s) 164, 165, 375
BmiI GGNNCC 2 cut(s) 165, 166
BmrFI CCNGG 2 cut(s) 123, 302
BpuMI CCSGG 2 cut(s) 123, 302
BsaAI YACGTR 3 cut(s) 71, 94, 184
BsaHI GRCGYC 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 359
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 148, 307
Bse118I RCCGGY 3 cut(s) 106, 126, 372
Bse1I ACTGG 1 cut(s) 178
BseGI GGATG 2 cut(s) 81, 316
BseLI CCNNNNNNNGG 3 cut(s) 71, 148, 307
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 2 cut(s) 36, 39
BseSI GKGCMC 1 cut(s) 168
BseX3I CGGCCG 1 cut(s) 124
Bsh1285I CGRYCG 2 cut(s) 127, 262
BshFI GGCC 4 cut(s) 126, 141, 166, 376
BsiEI CGRYCG 2 cut(s) 127, 262
BsiSI CCGG 6 cut(s) 107, 123, 127, 301, 360, 373
BslI CCNNNNNNNGG 3 cut(s) 71, 148, 307
BsmAI GTCTC 1 cut(s) 258
BsmI GAATGC 1 cut(s) 191
BsnI GGCC 4 cut(s) 126, 141, 166, 376
Bsp120I GGGCCC 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 2 cut(s) 213, 297
BspACI CCGC 4 cut(s) 57, 89, 161, 203
BspANI GGCC 4 cut(s) 126, 141, 166, 376
BspLI GGNNCC 2 cut(s) 165, 166
BspPI GGATC 1 cut(s) 292
BsrBI CCGCTC 1 cut(s) 205
BsrFI RCCGGY 3 cut(s) 106, 126, 372
BsrI ACTGG 1 cut(s) 178
BssAI RCCGGY 3 cut(s) 106, 126, 372
BssMI GATC 2 cut(s) 213, 297
BssNI GRCGYC 1 cut(s) 110
BssSI CACGAG 1 cut(s) 172
Bst2BI CACGAG 1 cut(s) 172
Bst4CI ACNGT 2 cut(s) 117, 226
Bst6I CTCTTC 1 cut(s) 270
BstACI GRCGYC 1 cut(s) 110
BstBAI YACGTR 3 cut(s) 71, 94, 184
BstC8I GCNNGC 3 cut(s) 108, 128, 351
BstF5I GGATG 2 cut(s) 81, 316
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 2 cut(s) 216, 300
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 2 cut(s) 213, 297
BstMCI CGRYCG 2 cut(s) 127, 262
BstSCI CCNGG 2 cut(s) 121, 300
BstSLI GKGCMC 1 cut(s) 168
BstZI CGGCCG 1 cut(s) 124
BsuI GTATCC 1 cut(s) 129
BsuRI GGCC 4 cut(s) 126, 141, 166, 376
BtsCI GGATG 2 cut(s) 81, 316
Cac8I GCNNGC 3 cut(s) 108, 128, 351
CfoI GCGC 1 cut(s) 355
Cfr10I RCCGGY 3 cut(s) 106, 126, 372
Cfr13I GGNCC 3 cut(s) 164, 165, 375
CseI GACGC 1 cut(s) 99
Csp6I GTAC 2 cut(s) 181, 363
CviJI RGCY 9 cut(s) 10, 29, 126, 141, 166, 177, 256, 349, 376
CviKI_1 RGCY 9 cut(s) 10, 29, 126, 141, 166, 177, 256, 349, 376
CviQI GTAC 2 cut(s) 181, 363
DpnI GATC 2 cut(s) 215, 299
DpnII GATC 2 cut(s) 213, 297
EaeI YGGCCR 1 cut(s) 124
EagI CGGCCG 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
EclXI CGGCCG 1 cut(s) 124
Eco147I AGGCCT 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 168
Eco52I CGGCCG 1 cut(s) 124
Eco72I CACGTG 2 cut(s) 71, 94
EcoO109I RGGNCCY 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 168
FaiI YATR 1 cut(s) 101
FauI CCCGC 2 cut(s) 64, 154
Fnu4HI GCNGC 1 cut(s) 203
FokI GGATG 2 cut(s) 68, 323
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 203
FspBI CTAG 1 cut(s) 143
GlaI GCGC 1 cut(s) 354
GluI GCNGC 1 cut(s) 203
HaeIII GGCC 4 cut(s) 126, 141, 166, 376
HapII CCGG 6 cut(s) 107, 123, 127, 301, 360, 373
HgaI GACGC 1 cut(s) 99
HhaI GCGC 1 cut(s) 355
Hin1I GRCGYC 1 cut(s) 110
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HinfI GANTC 1 cut(s) 243
HpaII CCGG 6 cut(s) 107, 123, 127, 301, 360, 373
HphI GGTGA 2 cut(s) 163, 214
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 213, 242
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 311
HpyCH4III ACNGT 2 cut(s) 117, 226
HpyCH4IV ACGT 3 cut(s) 70, 93, 183
HpyCH4V TGCA 1 cut(s) 191
HpySE526I ACGT 3 cut(s) 70, 93, 183
Hsp92I GRCGYC 1 cut(s) 110
HspAI GCGC 1 cut(s) 353
KroI GCCGGC 2 cut(s) 106, 126
KroNI GCCGGC 2 cut(s) 108, 128
Kzo9I GATC 2 cut(s) 213, 297
MaeI CTAG 1 cut(s) 143
MaeII ACGT 3 cut(s) 70, 93, 183
MaeIII GTNAC 3 cut(s) 111, 151, 220
MalI GATC 2 cut(s) 215, 299
MbiI CCGCTC 1 cut(s) 205
MboI GATC 2 cut(s) 213, 297
MboII GAAGA 2 cut(s) 287, 353
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 1 cut(s) 285
MlyI GAGTC 1 cut(s) 252
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 9 cut(s) 40, 57, 60, 76, 96, 131, 139, 307, 375
MreI CGCCGGCG 1 cut(s) 106
MroNI GCCGGC 2 cut(s) 106, 126
MseI TTAA 1 cut(s) 288
MspI CCGG 6 cut(s) 107, 123, 127, 301, 360, 373
MspR9I CCNGG 2 cut(s) 123, 302
Mva1269I GAATGC 1 cut(s) 191
NaeI GCCGGC 2 cut(s) 108, 128
NciI CCSGG 2 cut(s) 123, 302
NdeII GATC 2 cut(s) 213, 297
NgoMIV GCCGGC 2 cut(s) 106, 126
NlaIV GGNNCC 2 cut(s) 165, 166
NmuCI GTSAC 3 cut(s) 111, 151, 220
PceI AGGCCT 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 1 cut(s) 191
PdiI GCCGGC 2 cut(s) 108, 128
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 1 cut(s) 204
PleI GAGTC 1 cut(s) 251
PmaCI CACGTG 2 cut(s) 71, 94
PmlI CACGTG 2 cut(s) 71, 94
PpsI GAGTC 1 cut(s) 251
Ppu21I YACGTR 3 cut(s) 71, 94, 184
PspCI CACGTG 2 cut(s) 71, 94
PspN4I GGNNCC 2 cut(s) 165, 166
PspOMI GGGCCC 1 cut(s) 164
PspPI GGNCC 3 cut(s) 164, 165, 375
RsaI GTAC 2 cut(s) 182, 364
RsaNI GTAC 2 cut(s) 181, 363
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 1 cut(s) 203
Sau3AI GATC 2 cut(s) 213, 297
Sau96I GGNCC 3 cut(s) 164, 165, 375
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 2 cut(s) 123, 302
SduI GDGCHC 1 cut(s) 168
SetI ASST 7 cut(s) 73, 96, 150, 160, 186, 258, 328
SgrAI CRCCGGYG 1 cut(s) 106
Sse9I AATT 1 cut(s) 285
SseBI AGGCCT 1 cut(s) 141
SsiI CCGC 4 cut(s) 57, 89, 161, 203
SspMI CTAG 1 cut(s) 143
StuI AGGCCT 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 121, 300
TaaI ACNGT 2 cut(s) 117, 226
TaiI ACGT 3 cut(s) 73, 96, 186
TaqI TCGA 2 cut(s) 258, 335
TaqII GACCGA 1 cut(s) 276
TasI AATT 1 cut(s) 285
TauI GCSGC 1 cut(s) 205
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TseFI GTSAC 3 cut(s) 111, 151, 220
Tsp45I GTSAC 3 cut(s) 111, 151, 220
TspDTI ATGAA 2 cut(s) 66, 70
TspGWI ACGGA 1 cut(s) 323
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.