Rroxscaffold_4G00328500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0011489
Physical Location & Seq
Forward (+)
61537895 .. 61539091
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00328500.1

Sequence Viewer

Length: 462 bp
ATGGCAAAGCTTCTCATCTCCAACACCGCCTCTCTCTCCCTCCCTCCACCCTCCTCCTCCTCACGTGTTTCATTCAACCCTCCGCACGTGCCGCCGGCTCGGTTATTCCTCGCCGGGAAATCCAGCAACAGAGGCGTCACCACGGTGGTGACTCGAGCGGGCCCCACCACGAGCCAGTACGTGTTCGCGTTCGTTTTGCCGCTCTCACTCATTGCCTTCACTGTCTTCACCTCCATCAGAATCGCTGACAAGCTCGACAGAGACTATCTCGAGGAGGTTGCAATTAACCAAGCTATTAGGGAAACTGATGAGGATGATGAAGTTGACATGTCTCTGGAAGAAAAATCTGCCGTTCCACGAACTCGTAATCGTCCCAAAAGGGGAAGTCTAGATTTTTCTTGTTGCCATAGTGTTATCTTTATATCAGCTGCTGGCGTTCATTGTGATTTTGTGAATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.69

Weight (kDa)

6.82

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31560
fragaria_vesca FvH4_7g02100 FvH4_7g02100 FvH4_7g02100
malus_domestica MD02G1297000.v1.1 MD07G1027000.v1.1
prunus_persica Prupe.2G027100_v2.0.a1 Prupe.2G027100_v2.0.a1
pyrus_communis pycom02g25020 pycom07g02080
rosa_chinensis RchiOBHm_Chr1g0319401
rosa_laevigata RLG00000030488
rosa_multiflora Rmu_sc0005870.1_g000007
rosa_roxburghii Rroxscaffold_4G00328500
rosa_rugosa Rorug01G0027400
rosa_samantha Rh1AG039700 Rh1BG036500 Rh1CG038600 Rh1DG031200
rosa_wichuraiana Rw1G003170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 158, 202
AccII CGCG 1 cut(s) 188
AciI CCGC 5 cut(s) 27, 83, 92, 158, 200
AcsI RAATTY 1 cut(s) 454
AcvI CACGTG 2 cut(s) 65, 88
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 380
AflIII ACRYGT 3 cut(s) 64, 180, 327
AgsI TTSAA 1 cut(s) 76
AleI CACNNNNGTG 2 cut(s) 143, 146
AluBI AGCT 4 cut(s) 10, 253, 293, 428
AluI AGCT 4 cut(s) 10, 253, 293, 428
Alw26I GTCTC 2 cut(s) 255, 336
AlwNI CAGNNNCTG 1 cut(s) 431
Ama87I CYCGRG 2 cut(s) 153, 269
AoxI GGCC 1 cut(s) 160
ApaI GGGCCC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 428
ApoI RAATTY 1 cut(s) 454
AspS9I GGNCC 2 cut(s) 160, 161
AsuC2I CCSGG 1 cut(s) 115
AsuHPI GGTGA 3 cut(s) 130, 160, 220
AvaI CYCGRG 2 cut(s) 153, 269
BaeGI GKGCMC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 164
BauI CACGAG 1 cut(s) 169
BbrPI CACGTG 2 cut(s) 65, 88
BbsI GAAGAC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 415
BccI CCATC 1 cut(s) 242
BceAI ACGGC 1 cut(s) 335
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BcnI CCSGG 1 cut(s) 115
BcoDI GTCTC 2 cut(s) 255, 336
BfaI CTAG 1 cut(s) 389
BisI GCNGC 3 cut(s) 92, 200, 429
BlsI GCNGC 3 cut(s) 93, 201, 430
Bme1390I CCNGG 1 cut(s) 115
BmeT110I CYCGRG 2 cut(s) 153, 269
BmgT120I GGNCC 2 cut(s) 160, 161
BmiI GGNNCC 2 cut(s) 162, 163
BmrFI CCNGG 1 cut(s) 115
BpiI GAAGAC 1 cut(s) 217
BplI GAGNNNNNCTC 2 cut(s) 252, 284
BpuMI CCSGG 1 cut(s) 115
BsaAI YACGTR 3 cut(s) 65, 88, 181
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMI GCAATG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 175
BseRI GAGGAG 4 cut(s) 43, 46, 49, 287
BseSI GKGCMC 1 cut(s) 164
BseXI GCAGC 1 cut(s) 415
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 1 cut(s) 162
BsiHKCI CYCGRG 2 cut(s) 153, 269
BsiSI CCGG 2 cut(s) 95, 114
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 2 cut(s) 255, 336
BsmFI GGGAC 1 cut(s) 357
BsnI GGCC 1 cut(s) 162
BsoBI CYCGRG 2 cut(s) 153, 269
Bsp120I GGGCCC 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 164
BspACI CCGC 5 cut(s) 27, 83, 92, 158, 200
BspANI GGCC 1 cut(s) 162
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 2 cut(s) 162, 163
BsrBI CCGCTC 2 cut(s) 158, 202
BsrDI GCAATG 1 cut(s) 210
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 1 cut(s) 175
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 141
BssNI GRCGYC 1 cut(s) 135
BssSI CACGAG 1 cut(s) 169
Bst2BI CACGAG 1 cut(s) 169
Bst4CI ACNGT 2 cut(s) 145, 223
BstACI GRCGYC 1 cut(s) 135
BstBAI YACGTR 3 cut(s) 65, 88, 181
BstC8I GCNNGC 3 cut(s) 96, 160, 433
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 1 cut(s) 188
BstMAI GTCTC 2 cut(s) 255, 336
BstMWI GCNNNNNNNGC 2 cut(s) 91, 132
BstNSI RCATGY 1 cut(s) 331
BstSCI CCNGG 1 cut(s) 113
BstSLI GKGCMC 1 cut(s) 164
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 415
BstV2I GAAGAC 1 cut(s) 217
BsuRI GGCC 1 cut(s) 162
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 3 cut(s) 96, 160, 433
CaiI CAGNNNCTG 1 cut(s) 431
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 2 cut(s) 160, 161
CseI GACGC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 178
CviAII CATG 1 cut(s) 328
CviJI RGCY 7 cut(s) 10, 98, 162, 174, 253, 293, 428
CviKI_1 RGCY 7 cut(s) 10, 98, 162, 174, 253, 293, 428
CviQI GTAC 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 164
Eco72I CACGTG 2 cut(s) 65, 88
Eco88I CYCGRG 2 cut(s) 153, 269
EcoO109I RGGNCCY 1 cut(s) 161
EcoRI GAATTC 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 164
FaeI CATG 1 cut(s) 331
FaiI YATR 4 cut(s) 329, 408, 422, 460
FaqI GGGAC 1 cut(s) 357
FatI CATG 1 cut(s) 327
FauI CCCGC 1 cut(s) 151
Fnu4HI GCNGC 3 cut(s) 92, 200, 429
FokI GGATG 1 cut(s) 326
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 3 cut(s) 92, 200, 429
FspBI CTAG 1 cut(s) 389
GluI GCNGC 3 cut(s) 92, 200, 429
HaeIII GGCC 1 cut(s) 162
HapII CCGG 2 cut(s) 95, 114
HgaI GACGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 1 cut(s) 331
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 2 cut(s) 151, 240
HpaII CCGG 2 cut(s) 95, 114
HphI GGTGA 3 cut(s) 130, 160, 220
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 1 cut(s) 239
Hpy188III TCNNGA 3 cut(s) 269, 335, 389
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 2 cut(s) 145, 223
HpyCH4IV ACGT 3 cut(s) 64, 87, 180
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 132
HpySE526I ACGT 3 cut(s) 64, 87, 180
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 1 cut(s) 331
KroI GCCGGC 1 cut(s) 94
KroNI GCCGGC 1 cut(s) 96
LpnPI CCDG 6 cut(s) 108, 127, 136, 188, 320, 417
Lsp1109I GCAGC 1 cut(s) 415
MaeI CTAG 1 cut(s) 389
MaeII ACGT 3 cut(s) 64, 87, 180
MaeIII GTNAC 2 cut(s) 136, 148
MbiI CCGCTC 2 cut(s) 158, 202
MboII GAAGA 2 cut(s) 217, 350
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 2 cut(s) 282, 454
MlyI GAGTC 1 cut(s) 145
MmeI TCCRAC 1 cut(s) 45
MroNI GCCGGC 1 cut(s) 94
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 2 cut(s) 143, 146
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 2 cut(s) 95, 114
MspR9I CCNGG 1 cut(s) 115
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 91, 132
NaeI GCCGGC 1 cut(s) 96
NciI CCSGG 1 cut(s) 115
NgoMIV GCCGGC 1 cut(s) 94
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 2 cut(s) 162, 163
NmuCI GTSAC 2 cut(s) 136, 148
NspI RCATGY 1 cut(s) 331
OliI CACNNNNGTG 2 cut(s) 143, 146
PaeR7I CTCGAG 2 cut(s) 153, 269
PciI ACATGT 1 cut(s) 327
PdiI GCCGGC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 240
PkrI GCNGC 3 cut(s) 93, 201, 430
PleI GAGTC 1 cut(s) 145
PmaCI CACGTG 2 cut(s) 65, 88
PmlI CACGTG 2 cut(s) 65, 88
PpsI GAGTC 1 cut(s) 145
Ppu21I YACGTR 3 cut(s) 65, 88, 181
PscI ACATGT 1 cut(s) 327
PspCI CACGTG 2 cut(s) 65, 88
PspN4I GGNNCC 2 cut(s) 162, 163
PspOMI GGGCCC 1 cut(s) 160
PspPI GGNCC 2 cut(s) 160, 161
PspXI VCTCGAGB 1 cut(s) 153
PstNI CAGNNNCTG 1 cut(s) 431
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 2 cut(s) 143, 146
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 3 cut(s) 92, 200, 429
Sau96I GGNCC 2 cut(s) 160, 161
SchI GAGTC 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 1 cut(s) 164
SetI ASST 9 cut(s) 12, 67, 90, 183, 233, 255, 279, 295, 430
Sfr274I CTCGAG 2 cut(s) 153, 269
SlaI CTCGAG 2 cut(s) 153, 269
SmiMI CAYNNNNRTG 2 cut(s) 143, 146
SmlI CTYRAG 2 cut(s) 153, 269
SmoI CTYRAG 2 cut(s) 153, 269
Sse9I AATT 2 cut(s) 282, 454
SsiI CCGC 5 cut(s) 27, 83, 92, 158, 200
SspMI CTAG 1 cut(s) 389
StyD4I CCNGG 1 cut(s) 113
TaaI ACNGT 2 cut(s) 145, 223
TaiI ACGT 3 cut(s) 67, 90, 183
TaqI TCGA 3 cut(s) 154, 255, 270
TasI AATT 2 cut(s) 282, 454
TauI GCSGC 2 cut(s) 94, 202
TfiI GAWTC 1 cut(s) 240
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 2 cut(s) 136, 148
TseI GCWGC 1 cut(s) 428
Tsp45I GTSAC 2 cut(s) 136, 148
TspDTI ATGAA 4 cut(s) 60, 333, 428, 447
TspRI CASTG 1 cut(s) 226
XapI RAATTY 1 cut(s) 454
XbaI TCTAGA 1 cut(s) 388
XceI RCATGY 1 cut(s) 331
XhoI CTCGAG 2 cut(s) 153, 269
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.