Rh1BG036500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011489
Physical Location & Seq
Reverse (-)
4860181 .. 4861371
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG036500.1

Sequence Viewer

Length: 396 bp
ATGGCAAAGCTTCTCATCTCCAACACCGCCTCTCTCTCCCTCTCTCCACCCTCCTCCTCCTCCTCCTCACGTGTTTCATTCAACCCTCCGCACGTGCCGCCGGCTCGGTTATTCCTCGCTGGGAAATCCAGCAACAGAGGCGTCACCACGGTGGTGACTCGAGCGGGTCCCACCACGAGCCAGTACGTGTTCGCATTCGTTTTGCCGCTCTCACTCATCGCCTTCACCGTCTTCACCTCCATCAGAATCGCTGACAAGCTCGACAGAGACTATCTCGAGGAGGTTGCAATTAACCAAGCTATCAGGGAAACTGATGAGGATGATGAAGTTGACATGTCTCTGGAAGAAAAAGCTGCCGTTCCACGCACTCGTAATCGTCCCAAAAGGGAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.36

Weight (kDa)

8.09

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31560
fragaria_vesca FvH4_7g02100 FvH4_7g02100 FvH4_7g02100
malus_domestica MD02G1297000.v1.1 MD07G1027000.v1.1
prunus_persica Prupe.2G027100_v2.0.a1 Prupe.2G027100_v2.0.a1
pyrus_communis pycom02g25020 pycom07g02080
rosa_chinensis RchiOBHm_Chr1g0319401
rosa_laevigata RLG00000030488
rosa_multiflora Rmu_sc0005870.1_g000007
rosa_roxburghii Rroxscaffold_4G00328500
rosa_rugosa Rorug01G0027400
rosa_samantha Rh1AG039700 Rh1BG036500 Rh1CG038600 Rh1DG031200
rosa_wichuraiana Rw1G003170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 164, 208
AciI CCGC 5 cut(s) 27, 89, 98, 164, 206
AcvI CACGTG 2 cut(s) 71, 94
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 1 cut(s) 185
AflIII ACRYGT 3 cut(s) 70, 186, 333
AgsI TTSAA 1 cut(s) 82
AleI CACNNNNGTG 2 cut(s) 149, 152
AluBI AGCT 4 cut(s) 10, 259, 299, 353
AluI AGCT 4 cut(s) 10, 259, 299, 353
Alw26I GTCTC 2 cut(s) 261, 342
Ama87I CYCGRG 2 cut(s) 159, 275
ApeKI GCWGC 1 cut(s) 353
ArsI GACNNNNNNTTYG 1 cut(s) 375
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 4 cut(s) 136, 166, 217, 226
AvaI CYCGRG 2 cut(s) 159, 275
AvaII GGWCC 1 cut(s) 167
BauI CACGAG 1 cut(s) 175
BbrPI CACGTG 2 cut(s) 71, 94
BbsI GAAGAC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 340
BccI CCATC 1 cut(s) 248
BceAI ACGGC 1 cut(s) 341
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BcoDI GTCTC 2 cut(s) 261, 342
BfaI CTAG 1 cut(s) 394
BisI GCNGC 3 cut(s) 98, 206, 354
BlsI GCNGC 3 cut(s) 99, 207, 355
Bme18I GGWCC 1 cut(s) 167
BmeT110I CYCGRG 2 cut(s) 159, 275
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 2 cut(s) 168, 169
BpiI GAAGAC 1 cut(s) 223
BplI GAGNNNNNCTC 2 cut(s) 258, 290
BsaAI YACGTR 3 cut(s) 71, 94, 187
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 147
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 325
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 6 cut(s) 43, 46, 49, 52, 55, 293
BseXI GCAGC 1 cut(s) 340
BseYI CCCAGC 1 cut(s) 119
BsiHKCI CYCGRG 2 cut(s) 159, 275
BsiSI CCGG 1 cut(s) 101
BslFI GGGAC 2 cut(s) 153, 363
BsmAI GTCTC 2 cut(s) 261, 342
BsmFI GGGAC 2 cut(s) 153, 363
BsmI GAATGC 1 cut(s) 194
BsoBI CYCGRG 2 cut(s) 159, 275
BspACI CCGC 5 cut(s) 27, 89, 98, 164, 206
BspLI GGNNCC 2 cut(s) 168, 169
BsrBI CCGCTC 2 cut(s) 164, 208
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 147
BssNI GRCGYC 1 cut(s) 141
BssSI CACGAG 1 cut(s) 175
Bst2BI CACGAG 1 cut(s) 175
Bst4CI ACNGT 2 cut(s) 151, 229
BstACI GRCGYC 1 cut(s) 141
BstBAI YACGTR 3 cut(s) 71, 94, 187
BstC8I GCNNGC 1 cut(s) 102
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 325
BstMAI GTCTC 2 cut(s) 261, 342
BstMWI GCNNNNNNNGC 2 cut(s) 97, 138
BstNSI RCATGY 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 340
BstV2I GAAGAC 1 cut(s) 223
BtgI CCRYGG 1 cut(s) 147
BtgZI GCGATG 1 cut(s) 202
BtsCI GGATG 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 102
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 167
CseI GACGC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 184
CviAII CATG 1 cut(s) 334
CviJI RGCY 6 cut(s) 10, 104, 180, 259, 299, 353
CviKI_1 RGCY 6 cut(s) 10, 104, 180, 259, 299, 353
CviQI GTAC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 167
Eco72I CACGTG 2 cut(s) 71, 94
Eco88I CYCGRG 2 cut(s) 159, 275
EcoO109I RGGNCCY 1 cut(s) 167
FaeI CATG 1 cut(s) 337
FaiI YATR 1 cut(s) 335
FaqI GGGAC 2 cut(s) 153, 363
FatI CATG 1 cut(s) 333
FauI CCCGC 1 cut(s) 157
Fnu4HI GCNGC 3 cut(s) 98, 206, 354
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 3 cut(s) 98, 206, 354
FspBI CTAG 1 cut(s) 394
GluI GCNGC 3 cut(s) 98, 206, 354
GsaI CCCAGC 1 cut(s) 123
HapII CCGG 1 cut(s) 101
HgaI GACGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 337
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 2 cut(s) 157, 246
HpaII CCGG 1 cut(s) 101
HphI GGTGA 4 cut(s) 136, 166, 217, 226
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 1 cut(s) 245
Hpy188III TCNNGA 2 cut(s) 275, 341
Hpy8I GTNNAC 1 cut(s) 331
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 2 cut(s) 151, 229
HpyCH4IV ACGT 3 cut(s) 70, 93, 186
HpyCH4V TGCA 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 138
HpySE526I ACGT 3 cut(s) 70, 93, 186
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 337
KflI GGGWCCC 1 cut(s) 167
KroI GCCGGC 1 cut(s) 100
KroNI GCCGGC 1 cut(s) 102
LpnPI CCDG 6 cut(s) 105, 114, 142, 194, 289, 326
Lsp1109I GCAGC 1 cut(s) 340
MaeI CTAG 1 cut(s) 394
MaeII ACGT 3 cut(s) 70, 93, 186
MaeIII GTNAC 2 cut(s) 142, 154
MbiI CCGCTC 2 cut(s) 164, 208
MboII GAAGA 2 cut(s) 223, 356
MluCI AATT 1 cut(s) 288
MlyI GAGTC 1 cut(s) 151
MmeI TCCRAC 1 cut(s) 45
MroNI GCCGGC 1 cut(s) 100
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 2 cut(s) 149, 152
MspI CCGG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 194
MwoI GCNNNNNNNGC 2 cut(s) 97, 138
NaeI GCCGGC 1 cut(s) 102
NgoMIV GCCGGC 1 cut(s) 100
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 2 cut(s) 168, 169
NmuCI GTSAC 2 cut(s) 142, 154
NspI RCATGY 1 cut(s) 337
OliI CACNNNNGTG 2 cut(s) 149, 152
PaeR7I CTCGAG 2 cut(s) 159, 275
PciI ACATGT 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PctI GAATGC 1 cut(s) 194
PdiI GCCGGC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 246
PkrI GCNGC 3 cut(s) 99, 207, 355
PleI GAGTC 1 cut(s) 151
PmaCI CACGTG 2 cut(s) 71, 94
PmlI CACGTG 2 cut(s) 71, 94
PpsI GAGTC 1 cut(s) 151
Ppu21I YACGTR 3 cut(s) 71, 94, 187
PpuMI RGGWCCY 1 cut(s) 167
PscI ACATGT 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 167
PspCI CACGTG 2 cut(s) 71, 94
PspFI CCCAGC 1 cut(s) 119
PspN4I GGNNCC 2 cut(s) 168, 169
PspPI GGNCC 1 cut(s) 167
PspPPI RGGWCCY 1 cut(s) 167
PspXI VCTCGAGB 1 cut(s) 159
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 2 cut(s) 149, 152
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 3 cut(s) 98, 206, 354
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 1 cut(s) 151
SetI ASST 9 cut(s) 12, 73, 96, 189, 239, 261, 285, 301, 355
Sfr274I CTCGAG 2 cut(s) 159, 275
SinI GGWCC 1 cut(s) 167
SlaI CTCGAG 2 cut(s) 159, 275
SmiMI CAYNNNNRTG 2 cut(s) 149, 152
SmlI CTYRAG 2 cut(s) 159, 275
SmoI CTYRAG 2 cut(s) 159, 275
Sse9I AATT 1 cut(s) 288
SsiI CCGC 5 cut(s) 27, 89, 98, 164, 206
SspMI CTAG 1 cut(s) 394
TaaI ACNGT 2 cut(s) 151, 229
TaiI ACGT 3 cut(s) 73, 96, 189
TaqI TCGA 3 cut(s) 160, 261, 276
TasI AATT 1 cut(s) 288
TauI GCSGC 2 cut(s) 100, 208
TfiI GAWTC 1 cut(s) 246
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseFI GTSAC 2 cut(s) 142, 154
TseI GCWGC 1 cut(s) 353
Tsp45I GTSAC 2 cut(s) 142, 154
TspDTI ATGAA 2 cut(s) 66, 339
VpaK11BI GGWCC 1 cut(s) 167
XceI RCATGY 1 cut(s) 337
XhoI CTCGAG 2 cut(s) 159, 275
XspI CTAG 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.