pycom02g25020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0011489
Physical Location & Seq
Forward (+)
23066646 .. 23067453
808 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g25020.2

Sequence Viewer

Length: 390 bp
ATGGCAAGGCTTCTCATCTCCAACACAGCCTCACTCACTCTCTCTCCTCCACCCGCCCCACCCTCACGTGCTTCATTCATCCCTCCGCACGTGCCCATATCGCCGGCTTCACGTTTTCCCGGCCGGCAAACCAGAGGCCTAGAGGTGGTGACACGTGCGGGGCCCACCACGAGCCAGTACGTGTTCGCATTCGTTTTGCCGCTCTCTCTGATCGCCGTCACCGTTTTCACTTCCATCAGAGTCGCCGATAAGCTCGATCGAGACTTTCTTGAAGAGATGGCAATTAACCAAGCGATCCGGGAAACGGATGAGGAAGGCGAAGCTGACAAGTCGATAGAAGAAAAGCCTGCACTTTCCCGTACTCGCAACCGACCCAAAAGGGACATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.21

Weight (kDa)

9.38

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31560
fragaria_vesca FvH4_7g02100 FvH4_7g02100 FvH4_7g02100
malus_domestica MD02G1297000.v1.1 MD07G1027000.v1.1
prunus_persica Prupe.2G027100_v2.0.a1 Prupe.2G027100_v2.0.a1
pyrus_communis pycom02g25020 pycom07g02080
rosa_chinensis RchiOBHm_Chr1g0319401
rosa_laevigata RLG00000030488
rosa_multiflora Rmu_sc0005870.1_g000007
rosa_roxburghii Rroxscaffold_4G00328500
rosa_rugosa Rorug01G0027400
rosa_samantha Rh1AG039700 Rh1BG036500 Rh1CG038600 Rh1DG031200
rosa_wichuraiana Rw1G003170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 202
AciI CCGC 4 cut(s) 54, 86, 158, 200
AclWI GGATC 1 cut(s) 289
AcoI YGGCCR 1 cut(s) 121
AcvI CACGTG 3 cut(s) 68, 91, 155
AfaI GTAC 2 cut(s) 179, 361
AfiI CCNNNNNNNGG 2 cut(s) 145, 304
AflIII ACRYGT 2 cut(s) 152, 180
AgsI TTSAA 1 cut(s) 272
AluBI AGCT 2 cut(s) 253, 323
AluI AGCT 2 cut(s) 253, 323
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 1 cut(s) 289
AoxI GGCC 3 cut(s) 121, 136, 161
ApaI GGGCCC 1 cut(s) 165
AspS9I GGNCC 2 cut(s) 161, 162
AsuC2I CCSGG 2 cut(s) 120, 299
AsuHPI GGTGA 2 cut(s) 160, 211
BaeGI GKGCMC 2 cut(s) 96, 165
BanII GRGCYC 1 cut(s) 165
BauI CACGAG 1 cut(s) 169
BbrPI CACGTG 3 cut(s) 68, 91, 155
BccI CCATC 2 cut(s) 242, 271
BceAI ACGGC 1 cut(s) 200
BcnI CCSGG 2 cut(s) 120, 299
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 140
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
Bme1390I CCNGG 2 cut(s) 120, 299
BmgT120I GGNCC 2 cut(s) 161, 162
BmiI GGNNCC 2 cut(s) 162, 163
BmrFI CCNGG 2 cut(s) 120, 299
BpuMI CCSGG 2 cut(s) 120, 299
BsaAI YACGTR 4 cut(s) 68, 91, 155, 181
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 304
Bse118I RCCGGY 2 cut(s) 103, 123
Bse1I ACTGG 1 cut(s) 175
BseGI GGATG 2 cut(s) 78, 313
BseLI CCNNNNNNNGG 2 cut(s) 145, 304
BseNI ACTGG 1 cut(s) 175
BseRI GAGGAG 1 cut(s) 36
BseSI GKGCMC 2 cut(s) 96, 165
BseX3I CGGCCG 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 333
Bsh1285I CGRYCG 2 cut(s) 124, 259
BshFI GGCC 3 cut(s) 123, 138, 163
BsiEI CGRYCG 2 cut(s) 124, 259
BsiSI CCGG 4 cut(s) 104, 120, 124, 298
BslI CCNNNNNNNGG 2 cut(s) 145, 304
BsmAI GTCTC 1 cut(s) 255
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 3 cut(s) 123, 138, 163
Bsp120I GGGCCC 1 cut(s) 161
Bsp1286I GDGCHC 2 cut(s) 96, 165
Bsp143I GATC 3 cut(s) 210, 256, 294
BspACI CCGC 4 cut(s) 54, 86, 158, 200
BspANI GGCC 3 cut(s) 123, 138, 163
BspLI GGNNCC 2 cut(s) 162, 163
BspPI GGATC 1 cut(s) 289
BsrBI CCGCTC 1 cut(s) 202
BsrFI RCCGGY 2 cut(s) 103, 123
BsrI ACTGG 1 cut(s) 175
BssAI RCCGGY 2 cut(s) 103, 123
BssMI GATC 3 cut(s) 210, 256, 294
BssSI CACGAG 1 cut(s) 169
Bst2BI CACGAG 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 267
BstBAI YACGTR 4 cut(s) 68, 91, 155, 181
BstC8I GCNNGC 3 cut(s) 105, 125, 348
BstF5I GGATG 2 cut(s) 78, 313
BstKTI GATC 3 cut(s) 213, 259, 297
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 3 cut(s) 210, 256, 294
BstMCI CGRYCG 2 cut(s) 124, 259
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstSCI CCNGG 2 cut(s) 118, 297
BstSLI GKGCMC 2 cut(s) 96, 165
BstZI CGGCCG 1 cut(s) 121
BsuRI GGCC 3 cut(s) 123, 138, 163
BtsCI GGATG 2 cut(s) 78, 313
Cac8I GCNNGC 3 cut(s) 105, 125, 348
Cfr10I RCCGGY 2 cut(s) 103, 123
Cfr13I GGNCC 2 cut(s) 161, 162
Csp6I GTAC 2 cut(s) 178, 360
CviQI GTAC 2 cut(s) 178, 360
DpnI GATC 3 cut(s) 212, 258, 296
DpnII GATC 3 cut(s) 210, 256, 294
EaeI YGGCCR 1 cut(s) 121
EagI CGGCCG 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
EclXI CGGCCG 1 cut(s) 121
Eco147I AGGCCT 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 165
Eco52I CGGCCG 1 cut(s) 121
Eco72I CACGTG 3 cut(s) 68, 91, 155
EcoO109I RGGNCCY 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 165
FaiI YATR 1 cut(s) 98
FauI CCCGC 2 cut(s) 61, 151
Fnu4HI GCNGC 1 cut(s) 200
FokI GGATG 2 cut(s) 65, 320
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 1 cut(s) 140
GluI GCNGC 1 cut(s) 200
HaeIII GGCC 3 cut(s) 123, 138, 163
HapII CCGG 4 cut(s) 104, 120, 124, 298
HinfI GANTC 1 cut(s) 240
HpaII CCGG 4 cut(s) 104, 120, 124, 298
HphI GGTGA 2 cut(s) 160, 211
Hpy188I TCNGA 2 cut(s) 210, 239
Hpy188III TCNNGA 2 cut(s) 260, 269
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4IV ACGT 5 cut(s) 67, 90, 112, 154, 180
HpyCH4V TGCA 1 cut(s) 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpySE526I ACGT 5 cut(s) 67, 90, 112, 154, 180
KroI GCCGGC 2 cut(s) 103, 123
KroNI GCCGGC 2 cut(s) 105, 125
Kzo9I GATC 3 cut(s) 210, 256, 294
LpnPI CCDG 7 cut(s) 117, 133, 137, 145, 188, 311, 360
MaeI CTAG 1 cut(s) 140
MaeII ACGT 5 cut(s) 67, 90, 112, 154, 180
MaeIII GTNAC 2 cut(s) 148, 217
MalI GATC 3 cut(s) 212, 258, 296
MbiI CCGCTC 1 cut(s) 202
MboI GATC 3 cut(s) 210, 256, 294
MboII GAAGA 2 cut(s) 284, 350
MhlI GDGCHC 2 cut(s) 96, 165
MluCI AATT 1 cut(s) 282
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 7 cut(s) 40, 57, 73, 93, 128, 136, 304
MroNI GCCGGC 2 cut(s) 103, 123
MseI TTAA 1 cut(s) 285
MspI CCGG 4 cut(s) 104, 120, 124, 298
MspR9I CCNGG 2 cut(s) 120, 299
Mva1269I GAATGC 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 100
NaeI GCCGGC 2 cut(s) 105, 125
NciI CCSGG 2 cut(s) 120, 299
NdeII GATC 3 cut(s) 210, 256, 294
NgoMIV GCCGGC 2 cut(s) 103, 123
NlaIV GGNNCC 2 cut(s) 162, 163
NmuCI GTSAC 2 cut(s) 148, 217
PceI AGGCCT 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 1 cut(s) 188
PdiI GCCGGC 2 cut(s) 105, 125
PfoI TCCNGGA 1 cut(s) 297
PkrI GCNGC 1 cut(s) 201
Ple19I CGATCG 1 cut(s) 259
PleI GAGTC 1 cut(s) 248
PmaCI CACGTG 3 cut(s) 68, 91, 155
PmlI CACGTG 3 cut(s) 68, 91, 155
PpsI GAGTC 1 cut(s) 248
Ppu21I YACGTR 4 cut(s) 68, 91, 155, 181
PspCI CACGTG 3 cut(s) 68, 91, 155
PspN4I GGNNCC 2 cut(s) 162, 163
PspOMI GGGCCC 1 cut(s) 161
PspPI GGNCC 2 cut(s) 161, 162
PvuI CGATCG 1 cut(s) 259
RsaI GTAC 2 cut(s) 179, 361
RsaNI GTAC 2 cut(s) 178, 360
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 3 cut(s) 210, 256, 294
Sau96I GGNCC 2 cut(s) 161, 162
SchI GAGTC 1 cut(s) 249
ScrFI CCNGG 2 cut(s) 120, 299
SduI GDGCHC 2 cut(s) 96, 165
SetI ASST 8 cut(s) 70, 93, 115, 147, 157, 183, 255, 325
Sse9I AATT 1 cut(s) 282
SseBI AGGCCT 1 cut(s) 138
SsiI CCGC 4 cut(s) 54, 86, 158, 200
SspMI CTAG 1 cut(s) 140
StuI AGGCCT 1 cut(s) 138
StyD4I CCNGG 2 cut(s) 118, 297
TaaI ACNGT 1 cut(s) 223
TaiI ACGT 5 cut(s) 70, 93, 115, 157, 183
TaqI TCGA 3 cut(s) 255, 259, 332
TasI AATT 1 cut(s) 282
TauI GCSGC 1 cut(s) 202
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseFI GTSAC 2 cut(s) 148, 217
Tsp45I GTSAC 2 cut(s) 148, 217
TspDTI ATGAA 2 cut(s) 63, 67
TspGWI ACGGA 1 cut(s) 320
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.