Prupe.2G027100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0011489
Physical Location & Seq
Reverse (-)
2782516 .. 2784667
2152 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G027100.1

Sequence Viewer

Length: 420 bp
ATGGCAAGGCTTCTCATCTCCAACACAGCCTCTCTCACTCTCTCTCCACCAGCCCCGTCCTCACGTGCTCTACTCAACCCCCCGCACGTGCCCATATCGCCGGCGACTCGATTTTCCAGCCGGCAAGCCAGAGGCCTAACGGTGGTGACACGTGCCGGTCCCACCACGAACCAGTACGTGTTCGCATTCGTTATGCCACTCTCTCTGATCGCTGTCACTGTCTTCACCTCCATGAGAATCGCCGATAAGCTCGACGAAGAATTTCTTGAAGAGATTGCAAGTGTTTTTATTTTTATTTTCGTTTTTGTGGTGATTGGAATGAACAAGATTGCCAATGATTTCTTTCATATAGAATATAAAGTGGCAATTGAACTGCTAGGCAAGCCTTCAATGTTTTCCCATCAGTTTTATATTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.44

Weight (kDa)

9.22

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31560
fragaria_vesca FvH4_7g02100 FvH4_7g02100 FvH4_7g02100
malus_domestica MD02G1297000.v1.1 MD07G1027000.v1.1
prunus_persica Prupe.2G027100_v2.0.a1 Prupe.2G027100_v2.0.a1
pyrus_communis pycom02g25020 pycom07g02080
rosa_chinensis RchiOBHm_Chr1g0319401
rosa_laevigata RLG00000030488
rosa_multiflora Rmu_sc0005870.1_g000007
rosa_roxburghii Rroxscaffold_4G00328500
rosa_rugosa Rorug01G0027400
rosa_samantha Rh1AG039700 Rh1BG036500 Rh1CG038600 Rh1DG031200
rosa_wichuraiana Rw1G003170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 83
AcsI RAATTY 1 cut(s) 260
AcvI CACGTG 3 cut(s) 65, 88, 152
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 142
AflIII ACRYGT 2 cut(s) 149, 177
AgsI TTSAA 3 cut(s) 269, 371, 390
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
Alw21I GWGCWC 1 cut(s) 70
AoxI GGCC 1 cut(s) 133
ApoI RAATTY 1 cut(s) 260
Asp700I GAANNNNTTC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 3 cut(s) 157, 217, 322
AvaII GGWCC 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 93
BbrPI CACGTG 3 cut(s) 65, 88, 152
BbsI GAAGAC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 70
BccI CCATC 1 cut(s) 408
BfaI CTAG 1 cut(s) 377
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 214
BsaAI YACGTR 4 cut(s) 65, 88, 152, 178
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse118I RCCGGY 3 cut(s) 100, 120, 155
Bse1I ACTGG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 172
BseSI GKGCMC 1 cut(s) 93
BshFI GGCC 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 3 cut(s) 101, 121, 156
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 144
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 1 cut(s) 135
Bsp1286I GDGCHC 2 cut(s) 70, 93
Bsp143I GATC 1 cut(s) 207
BspACI CCGC 1 cut(s) 83
BspANI GGCC 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 160
BsrFI RCCGGY 3 cut(s) 100, 120, 155
BsrI ACTGG 1 cut(s) 172
BssAI RCCGGY 3 cut(s) 100, 120, 155
BssMI GATC 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 142, 220
Bst6I CTCTTC 1 cut(s) 264
BstBAI YACGTR 4 cut(s) 65, 88, 152, 178
BstC8I GCNNGC 4 cut(s) 102, 122, 126, 383
BstKTI GATC 1 cut(s) 210
BstMBI GATC 1 cut(s) 207
BstMWI GCNNNNNNNGC 2 cut(s) 97, 382
BstSLI GKGCMC 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 214
BsuRI GGCC 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 4 cut(s) 102, 122, 126, 383
Cfr10I RCCGGY 3 cut(s) 100, 120, 155
Cfr13I GGNCC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 175
CviAII CATG 1 cut(s) 232
CviJI RGCY 8 cut(s) 10, 29, 53, 120, 128, 135, 250, 385
CviKI_1 RGCY 8 cut(s) 10, 29, 53, 120, 128, 135, 250, 385
CviQI GTAC 1 cut(s) 175
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco147I AGGCCT 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 158
Eco72I CACGTG 3 cut(s) 65, 88, 152
FaeI CATG 1 cut(s) 235
FaiI YATR 7 cut(s) 95, 194, 233, 348, 350, 357, 411
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FaqI GGGAC 1 cut(s) 144
FatI CATG 1 cut(s) 231
FauI CCCGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 377
HaeIII GGCC 1 cut(s) 135
HapII CCGG 3 cut(s) 101, 121, 156
Hin1II CATG 1 cut(s) 235
HinfI GANTC 2 cut(s) 106, 237
HpaII CCGG 3 cut(s) 101, 121, 156
HphI GGTGA 3 cut(s) 157, 217, 322
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 1 cut(s) 266
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 1 cut(s) 396
HpyCH4III ACNGT 2 cut(s) 142, 220
HpyCH4IV ACGT 4 cut(s) 64, 87, 151, 177
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 382
HpySE526I ACGT 4 cut(s) 64, 87, 151, 177
Hsp92II CATG 1 cut(s) 235
KroI GCCGGC 2 cut(s) 100, 120
KroNI GCCGGC 2 cut(s) 102, 122
Kzo9I GATC 1 cut(s) 207
LpnPI CCDG 7 cut(s) 63, 114, 130, 134, 142, 169, 185
MaeI CTAG 1 cut(s) 377
MaeII ACGT 4 cut(s) 64, 87, 151, 177
MaeIII GTNAC 2 cut(s) 145, 214
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 3 cut(s) 214, 269, 281
MfeI CAATTG 1 cut(s) 366
MhlI GDGCHC 2 cut(s) 70, 93
MluCI AATT 2 cut(s) 260, 366
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 4 cut(s) 40, 70, 125, 238
MreI CGCCGGCG 1 cut(s) 100
MroNI GCCGGC 2 cut(s) 100, 120
MroXI GAANNNNTTC 1 cut(s) 261
MslI CAYNNNNRTG 1 cut(s) 230
MspI CCGG 3 cut(s) 101, 121, 156
MunI CAATTG 1 cut(s) 366
Mva1269I GAATGC 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 97, 382
NaeI GCCGGC 2 cut(s) 102, 122
NdeII GATC 1 cut(s) 207
NgoMIV GCCGGC 2 cut(s) 100, 120
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 1 cut(s) 160
NmuCI GTSAC 2 cut(s) 145, 214
PceI AGGCCT 1 cut(s) 135
PctI GAATGC 1 cut(s) 185
PdiI GCCGGC 2 cut(s) 102, 122
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 237
PleI GAGTC 1 cut(s) 100
PmaCI CACGTG 3 cut(s) 65, 88, 152
PmlI CACGTG 3 cut(s) 65, 88, 152
PpsI GAGTC 1 cut(s) 100
Ppu21I YACGTR 4 cut(s) 65, 88, 152, 178
PspCI CACGTG 3 cut(s) 65, 88, 152
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 158
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 230
Sau3AI GATC 1 cut(s) 207
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 1 cut(s) 100
SduI GDGCHC 2 cut(s) 70, 93
SetI ASST 6 cut(s) 67, 90, 154, 180, 230, 252
SgrAI CRCCGGYG 1 cut(s) 100
SinI GGWCC 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 230
Sse9I AATT 2 cut(s) 260, 366
SseBI AGGCCT 1 cut(s) 135
SsiI CCGC 1 cut(s) 83
SspMI CTAG 1 cut(s) 377
StuI AGGCCT 1 cut(s) 135
TaaI ACNGT 2 cut(s) 142, 220
TaiI ACGT 4 cut(s) 67, 90, 154, 180
TaqI TCGA 2 cut(s) 109, 252
TasI AATT 2 cut(s) 260, 366
TfiI GAWTC 1 cut(s) 237
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 2 cut(s) 145, 214
Tsp45I GTSAC 2 cut(s) 145, 214
TspDTI ATGAA 2 cut(s) 335, 335
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.