AT4G31670

ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
15335743 .. 15339613
3871 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31670.1

Sequence Viewer

Length: 1896 bp
ATGCATGAGGTTGGTTTTCCGTTGGATCTCTCTGTCTTCACTCGCCTTATAGCGACTCTATTTTTCCTCGCCGTTGGTGTTTTTTACTTTCTCAAAAACACCGCCGCTAAGTACTTCGACATCGGAGCCGCCGCCGCCGGAGGTTTCGACAGGGACTTCATGGCGGTTGATGCTGAGGATTGCTCTGTCTGTGGGAATTTTTCCACCAAGAAATGCTCCCGCTGCAAATCCGTTCGATACTGCTCAGCAGAGTGCCAAAGGTCAGATTGGAGTTCGGGTCATCAAAGAAACTGCAGGGATTATGGGATTACTACATTAACACCATCTGCAAAGAATGGCTTAAGGTTCAGAGCTTCTCCATTCGGGGATAGTTCTGCGTCTAGTATTGCACTGATTTCCGAACGGGGCCAAAACAAGAGTAGTCTCAAGCCAAGAGAAGTTCTTTTTCCATATGAAGAATTTGTTGAATATTTTAACTGGGACAATCCAGAATTGGCTCCCTGTGGGCTCATGAATTGTGGAAATAGTTGTTTCGCCAATGTGATTCTACAATGCCTTTCCTGGACACGTCCTCTTGTTGCATATCTGCTGGAGAAAGGCCACAAGAGAGAATGTATGCGCAACGATTGGTGCTTCCTCTGTGAATTTCAAACCCATGTTGAGAGAGCGAGTCAAAGTCGGTTCCCTTTTTCACCAATGAACATTATTTCACGGTTAACTAATATTGGTGGAACTCTTGGATATGGAAGACAGGAGGATGCTCATGAGTTCATGAGGTATGCGATTGATATGATGCAGTCTGTTTGCCTTGATGAATTCGGTGGAGAAAAAATAGTGCCTCCTCGTTCACAAGAAACAACACTTATTCAGTATATATTTGGAGGTCTCCTTCAATCACAGGTTCAATGTACTGTTTGCAATCATGTTTCTGACCAATATGAAAATATGATGGATCTAATCGTTGAGATGCATGGGGATGCGGGGTCTTTGGAGGAATGTCTTGATCAATTTACAGCCGAAGAGTGGCTTCATGGAGATAATATGTACAAATGTGATAGGTGTAGTGACTATGTAAAAGCATGTAAGCGTCTTACGATTCGACGCGCTCCAAATATTCTTACTATTGCCTTAAAAAGATATCAGGGAGGAAGATACGGAAAATTGAACAAAAGAATAAGTTTTCCCGAGACATTGGATCTTAATCCTTACATGAGTGAAGGCGGAGATGGATCAGATGTATATAAACTCTATGCAGTGATTGTCCATTTAGATATGCTGAATGCATCATTCTTCGGCCATTACATATGCTACATTAAGGATTTTTGCGGAAACTGGTATAGAATAGATGATTCCGAGATAGAAAGTGTTGAATTAGAAGATGTCCTTTCTCAAAGAGCTTATATGCTCCTCTACAGCAGGATTCAAGCTCGGTCGTCATCTTCATGTCTTAGATCAGAAGTTAAAGACGAGAAGAAAACAGACACATTGGACACAGAATCTTGCGTAAAAGAGTTAGTTGAGAGTTCAATGGTAGGAGCTATTGAAAGCAGAAGCAGCACCCATGCGACCATTGAAGACCCTGTATGCGAGCAATCACCATCACCATCGCCATCACCATCACCATCACCATCGCCATCACCATCACCATCAGTATTGGCCTCTGAATGTTGTAGTGAGGTTGAAAGGATTGATACATTGGATTCCGAGTCCAACTCTTCGATTGATGACTCTGCAACAGATCATCAAGAGGATGTAGCAAATGGGAACAAAGATCCAGAGGTAAAATATCAGGCTGCCGATTCTTGGTCAGACCCTACAACTTCAACTCCATTGGTCTGTACAAAATCCAAACCTCCGGTGAGAGATATGGACACCAAGATGATCGACGCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

631

Amino Acids

70.75

Weight (kDa)

4.97

Isoelectric Point (pI)

64.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-MYND PF01753 61 - 98 3.4e-11 MYND finger
UCH PF00443 168 - 471 1.1e-51 Ubiquitin carboxyl-terminal hydrolase
UCH_1 PF13423 169 - 452 5.4e-17 Ubiquitin carboxyl-terminal hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 620
AccII CGCG 1 cut(s) 1104
AclWI GGATC 5 cut(s) 33, 960, 1203, 1237, 1766
AcoI YGGCCR 1 cut(s) 1294
AcsI RAATTY 4 cut(s) 196, 458, 644, 815
AfaI GTAC 4 cut(s) 113, 910, 1046, 1840
AfiI CCNNNNNNNGG 2 cut(s) 1023, 1803
AflII CTTAAG 1 cut(s) 340
AflIII ACRYGT 1 cut(s) 566
AjiI CACGTC 1 cut(s) 569
AjnI CCWGG 1 cut(s) 560
AluBI AGCT 4 cut(s) 353, 1397, 1427, 1538
AluI AGCT 4 cut(s) 353, 1397, 1427, 1538
Alw26I GTCTC 3 cut(s) 428, 890, 1181
AlwI GGATC 5 cut(s) 33, 960, 1203, 1237, 1766
Ama87I CYCGRG 1 cut(s) 1184
AoxI GGCC 4 cut(s) 406, 598, 1294, 1656
ApeKI GCWGC 3 cut(s) 222, 1554, 1793
ApoI RAATTY 4 cut(s) 196, 458, 644, 815
AspLEI GCGC 2 cut(s) 621, 1106
AspS9I GGNCC 1 cut(s) 406
AsuHPI GGTGA 9 cut(s) 684, 1587, 1593, 1605, 1611, 1617, 1629, 1635, 1870
AvaI CYCGRG 1 cut(s) 1184
BanII GRGCYC 1 cut(s) 510
BbsI GAAGAC 3 cut(s) 28, 754, 1581
BbvCI CCTCAGC 1 cut(s) 174
BbvI GCAGC 3 cut(s) 209, 1566, 1780
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 562
BclI TGATCA 1 cut(s) 1003
BcoDI GTCTC 3 cut(s) 428, 890, 1181
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 2 cut(s) 292, 1411
BfrI CTTAAG 1 cut(s) 340
BisI GCNGC 7 cut(s) 105, 129, 132, 135, 223, 1555, 1794
BlpI GCTNAGC 1 cut(s) 244
BlsI GCNGC 7 cut(s) 106, 130, 133, 136, 224, 1556, 1795
BmcAI AGTACT 1 cut(s) 113
Bme1390I CCNGG 1 cut(s) 562
BmeT110I CYCGRG 1 cut(s) 1184
BmgBI CACGTC 1 cut(s) 569
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 4 cut(s) 127, 407, 498, 683
BmrFI CCNGG 1 cut(s) 562
BmrI ACTGGG 1 cut(s) 487
BmsI GCATC 6 cut(s) 160, 748, 783, 957, 967, 1292
BmuI ACTGGG 1 cut(s) 487
BpiI GAAGAC 3 cut(s) 28, 754, 1581
BplI GAGNNNNNCTC 4 cut(s) 167, 199, 1697, 1729
BpmI CTGGAG 1 cut(s) 611
Bpu10I CCTNAGC 1 cut(s) 174
Bpu1102I GCTNAGC 1 cut(s) 244
BpuEI CTTGAG 1 cut(s) 410
BsaBI GATNNNNATC 1 cut(s) 1200
BsaI GGTCTC 1 cut(s) 890
BsaWI WCCGGW 1 cut(s) 1855
BsaXI ACNNNNNCTCC 4 cut(s) 262, 292, 1810, 1840
Bsc4I CCNNNNNNNGG 2 cut(s) 1023, 1803
Bse1I ACTGG 2 cut(s) 482, 1337
Bse8I GATNNNNATC 1 cut(s) 1200
BseBI CCWGG 1 cut(s) 562
BseGI GGATG 3 cut(s) 763, 982, 1756
BseJI GATNNNNATC 1 cut(s) 1200
BseLI CCNNNNNNNGG 2 cut(s) 1023, 1803
BseMII CTCAG 2 cut(s) 165, 258
BseNI ACTGG 2 cut(s) 482, 1337
BseRI GAGGAG 2 cut(s) 831, 1397
BseXI GCAGC 3 cut(s) 209, 1566, 1780
Bsh1236I CGCG 1 cut(s) 1104
Bsh1285I CGRYCG 1 cut(s) 1433
BshFI GGCC 4 cut(s) 408, 600, 1296, 1658
BsiEI CGRYCG 1 cut(s) 1433
BsiHKCI CYCGRG 1 cut(s) 1184
BsiSI CCGG 2 cut(s) 138, 1856
BslFI GGGAC 2 cut(s) 167, 494
BslI CCNNNNNNNGG 2 cut(s) 1023, 1803
BsmAI GTCTC 3 cut(s) 428, 890, 1181
BsmFI GGGAC 2 cut(s) 167, 494
BsmI GAATGC 1 cut(s) 1285
BsnI GGCC 4 cut(s) 408, 600, 1296, 1658
Bso31I GGTCTC 1 cut(s) 890
BsoBI CYCGRG 1 cut(s) 1184
Bsp1286I GDGCHC 1 cut(s) 510
Bsp1407I TGTACA 2 cut(s) 1044, 1838
Bsp143I GATC 9 cut(s) 25, 952, 1003, 1195, 1229, 1451, 1738, 1771, 1881
Bsp1720I GCTNAGC 1 cut(s) 244
BspANI GGCC 4 cut(s) 408, 600, 1296, 1658
BspCNI CTCAG 2 cut(s) 166, 257
BspFNI CGCG 1 cut(s) 1104
BspHI TCATGA 3 cut(s) 510, 763, 771
BspLI GGNNCC 4 cut(s) 127, 407, 498, 683
BspMAI CTGCAG 1 cut(s) 296
BspPI GGATC 5 cut(s) 33, 960, 1203, 1237, 1766
BspTI CTTAAG 1 cut(s) 340
BspTNI GGTCTC 1 cut(s) 890
BsrGI TGTACA 2 cut(s) 1044, 1838
BsrI ACTGG 2 cut(s) 482, 1337
BssMI GATC 9 cut(s) 25, 952, 1003, 1195, 1229, 1451, 1738, 1771, 1881
Bst2UI CCWGG 1 cut(s) 562
Bst4CI ACNGT 2 cut(s) 714, 913
Bst6I CTCTTC 2 cut(s) 1014, 1720
BstAFI CTTAAG 1 cut(s) 340
BstAUI TGTACA 2 cut(s) 1044, 1838
BstC8I GCNNGC 1 cut(s) 1589
BstDEI CTNAG 5 cut(s) 108, 174, 244, 1448, 1890
BstF5I GGATG 3 cut(s) 763, 982, 1756
BstFNI CGCG 1 cut(s) 1104
BstHHI GCGC 2 cut(s) 621, 1106
BstKTI GATC 9 cut(s) 28, 955, 1006, 1198, 1232, 1454, 1741, 1774, 1884
BstMAI GTCTC 3 cut(s) 428, 890, 1181
BstMBI GATC 9 cut(s) 25, 952, 1003, 1195, 1229, 1451, 1738, 1771, 1881
BstMCI CGRYCG 1 cut(s) 1433
BstMWI GCNNNNNNNGC 4 cut(s) 134, 170, 222, 1554
BstNI CCWGG 1 cut(s) 562
BstNSI RCATGY 1 cut(s) 1083
BstSCI CCNGG 1 cut(s) 560
BstSFI CTRYAG 2 cut(s) 292, 1411
BstUI CGCG 1 cut(s) 1104
BstV1I GCAGC 3 cut(s) 209, 1566, 1780
BstV2I GAAGAC 3 cut(s) 28, 754, 1581
BstX2I RGATCY 4 cut(s) 25, 952, 1195, 1771
BstYI RGATCY 4 cut(s) 25, 952, 1195, 1771
BsuRI GGCC 4 cut(s) 408, 600, 1296, 1658
BtgZI GCGATG 2 cut(s) 1590, 1614
BtrI CACGTC 1 cut(s) 569
BtsCI GGATG 3 cut(s) 763, 982, 1756
BtsI GCAGTG 1 cut(s) 1260
BtsIMutI CAGTG 2 cut(s) 389, 1260
Cac8I GCNNGC 1 cut(s) 1589
CciI TCATGA 3 cut(s) 510, 763, 771
CfoI GCGC 2 cut(s) 621, 1106
Cfr13I GGNCC 1 cut(s) 406
CseI GACGC 3 cut(s) 366, 1076, 1110
Csp6I GTAC 4 cut(s) 112, 909, 1045, 1839
CviQI GTAC 4 cut(s) 112, 909, 1045, 1839
DdeI CTNAG 5 cut(s) 108, 174, 244, 1448, 1890
DpnI GATC 9 cut(s) 27, 954, 1005, 1197, 1231, 1453, 1740, 1773, 1883
DpnII GATC 9 cut(s) 25, 952, 1003, 1195, 1229, 1451, 1738, 1771, 1881
EaeI YGGCCR 1 cut(s) 1294
Eam1104I CTCTTC 2 cut(s) 1014, 1720
EarI CTCTTC 2 cut(s) 1014, 1720
EciI GGCGGA 1 cut(s) 1236
Eco24I GRGCYC 1 cut(s) 510
Eco31I GGTCTC 1 cut(s) 890
Eco32I GATATC 1 cut(s) 1139
Eco88I CYCGRG 1 cut(s) 1184
EcoRI GAATTC 1 cut(s) 815
EcoRII CCWGG 1 cut(s) 560
EcoRV GATATC 1 cut(s) 1139
EcoT22I ATGCAT 3 cut(s) 6, 972, 1285
EcoT38I GRGCYC 1 cut(s) 510
FalI AAGNNNNNCTT 6 cut(s) 323, 355, 1011, 1043, 1368, 1400
FaqI GGGAC 2 cut(s) 167, 494
FauI CCCGC 2 cut(s) 227, 973
FauNDI CATATG 2 cut(s) 451, 1304
FbaI TGATCA 1 cut(s) 1003
Fnu4HI GCNGC 7 cut(s) 105, 129, 132, 135, 223, 1555, 1794
FokI GGATG 3 cut(s) 770, 989, 1763
FriOI GRGCYC 1 cut(s) 510
Fsp4HI GCNGC 7 cut(s) 105, 129, 132, 135, 223, 1555, 1794
FspBI CTAG 1 cut(s) 381
FspI TGCGCA 1 cut(s) 620
GlaI GCGC 2 cut(s) 620, 1105
GluI GCNGC 7 cut(s) 105, 129, 132, 135, 223, 1555, 1794
GsuI CTGGAG 1 cut(s) 611
HaeIII GGCC 4 cut(s) 408, 600, 1296, 1658
HapII CCGG 2 cut(s) 138, 1856
HgaI GACGC 3 cut(s) 366, 1076, 1110
HhaI GCGC 2 cut(s) 621, 1106
Hin6I GCGC 2 cut(s) 619, 1104
HinP1I GCGC 2 cut(s) 619, 1104
HincII GTYRAC 1 cut(s) 717
HindII GTYRAC 1 cut(s) 717
HpaI GTTAAC 1 cut(s) 717
HpaII CCGG 2 cut(s) 138, 1856
HphI GGTGA 9 cut(s) 684, 1587, 1593, 1605, 1611, 1617, 1629, 1635, 1870
Hpy166II GTNNAC 2 cut(s) 717, 848
Hpy188III TCNNGA 8 cut(s) 488, 511, 764, 772, 1001, 1184, 1745, 1775
Hpy8I GTNNAC 2 cut(s) 717, 848
Hpy99I CGWCG 2 cut(s) 1104, 1889
HpyAV CCTTC 2 cut(s) 899, 1211
HpyCH4III ACNGT 2 cut(s) 714, 913
HpyCH4IV ACGT 1 cut(s) 568
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 170, 222, 1554
HpyF3I CTNAG 5 cut(s) 108, 174, 244, 1448, 1890
HpySE526I ACGT 1 cut(s) 568
HspAI GCGC 2 cut(s) 619, 1104
Ksp22I TGATCA 1 cut(s) 1003
KspAI GTTAAC 1 cut(s) 717
Kzo9I GATC 9 cut(s) 25, 952, 1003, 1195, 1229, 1451, 1738, 1771, 1881
LmnI GCTCC 6 cut(s) 125, 221, 502, 1111, 1410, 1535
Lsp1109I GCAGC 3 cut(s) 209, 1566, 1780
LweI GCATC 6 cut(s) 160, 748, 783, 957, 967, 1292
MaeI CTAG 1 cut(s) 381
MaeII ACGT 1 cut(s) 568
MaeIII GTNAC 1 cut(s) 1064
MalI GATC 9 cut(s) 27, 954, 1005, 1197, 1231, 1453, 1740, 1773, 1883
MboI GATC 9 cut(s) 25, 952, 1003, 1195, 1229, 1451, 1738, 1771, 1881
MflI RGATCY 4 cut(s) 25, 952, 1195, 1771
MhlI GDGCHC 1 cut(s) 510
MluCI AATT 9 cut(s) 196, 458, 491, 514, 644, 815, 1007, 1160, 1370
MlyI GAGTC 4 cut(s) 49, 679, 1715, 1721
MmeI TCCRAC 1 cut(s) 1734
Mph1103I ATGCAT 3 cut(s) 6, 972, 1285
MseI TTAA 8 cut(s) 317, 341, 474, 716, 1130, 1200, 1314, 1461
MslI CAYNNNNRTG 3 cut(s) 975, 1441, 1877
MspA1I CMGCKG 1 cut(s) 222
MspCI CTTAAG 1 cut(s) 340
MspI CCGG 2 cut(s) 138, 1856
MspR9I CCNGG 1 cut(s) 562
Mva1269I GAATGC 1 cut(s) 1285
MvaI CCWGG 1 cut(s) 562
MvnI CGCG 1 cut(s) 1104
MwoI GCNNNNNNNGC 4 cut(s) 134, 170, 222, 1554
NdeI CATATG 2 cut(s) 451, 1304
NdeII GATC 9 cut(s) 25, 952, 1003, 1195, 1229, 1451, 1738, 1771, 1881
NlaIV GGNNCC 4 cut(s) 127, 407, 498, 683
NmuCI GTSAC 1 cut(s) 1064
NsbI TGCGCA 1 cut(s) 620
NsiI ATGCAT 3 cut(s) 6, 972, 1285
NspI RCATGY 1 cut(s) 1083
PagI TCATGA 3 cut(s) 510, 763, 771
PctI GAATGC 1 cut(s) 1285
PfeI GAWTC 7 cut(s) 544, 1096, 1349, 1420, 1496, 1700, 1799
PfoI TCCNGGA 1 cut(s) 560
PkrI GCNGC 7 cut(s) 106, 130, 133, 136, 224, 1556, 1795
PleI GAGTC 4 cut(s) 49, 678, 1714, 1721
PpsI GAGTC 4 cut(s) 49, 678, 1714, 1721
Psp6I CCWGG 1 cut(s) 560
PspGI CCWGG 1 cut(s) 560
PspN4I GGNNCC 4 cut(s) 127, 407, 498, 683
PspPI GGNCC 1 cut(s) 406
PstI CTGCAG 1 cut(s) 296
PsuI RGATCY 4 cut(s) 25, 952, 1195, 1771
RsaI GTAC 4 cut(s) 113, 910, 1046, 1840
RsaNI GTAC 4 cut(s) 112, 909, 1045, 1839
RseI CAYNNNNRTG 3 cut(s) 975, 1441, 1877
SaqAI TTAA 8 cut(s) 317, 341, 474, 716, 1130, 1200, 1314, 1461
SatI GCNGC 7 cut(s) 105, 129, 132, 135, 223, 1555, 1794
Sau3AI GATC 9 cut(s) 25, 952, 1003, 1195, 1229, 1451, 1738, 1771, 1881
Sau96I GGNCC 1 cut(s) 406
ScaI AGTACT 1 cut(s) 113
SchI GAGTC 4 cut(s) 49, 679, 1715, 1721
ScrFI CCNGG 1 cut(s) 562
SduI GDGCHC 1 cut(s) 510
SfaNI GCATC 6 cut(s) 160, 748, 783, 957, 967, 1292
SfcI CTRYAG 2 cut(s) 292, 1411
SmiMI CAYNNNNRTG 3 cut(s) 975, 1441, 1877
SmlI CTYRAG 2 cut(s) 340, 425
SmoI CTYRAG 2 cut(s) 340, 425
Sse9I AATT 9 cut(s) 196, 458, 491, 514, 644, 815, 1007, 1160, 1370
SspI AATATT 3 cut(s) 470, 724, 1114
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 560
TaaI ACNGT 2 cut(s) 714, 913
TaiI ACGT 1 cut(s) 571
TaqI TCGA 6 cut(s) 117, 147, 235, 1099, 1718, 1884
TaqII GACCGA 1 cut(s) 1419
TasI AATT 9 cut(s) 196, 458, 491, 514, 644, 815, 1007, 1160, 1370
TatI WGTACW 4 cut(s) 111, 908, 1044, 1838
TauI GCSGC 4 cut(s) 107, 131, 134, 137
TfiI GAWTC 7 cut(s) 544, 1096, 1349, 1420, 1496, 1700, 1799
Tru1I TTAA 8 cut(s) 317, 341, 474, 716, 1130, 1200, 1314, 1461
Tru9I TTAA 8 cut(s) 317, 341, 474, 716, 1130, 1200, 1314, 1461
TscAI CASTG 2 cut(s) 396, 1260
TseFI GTSAC 1 cut(s) 1064
TseI GCWGC 3 cut(s) 222, 1554, 1793
Tsp45I GTSAC 1 cut(s) 1064
TspDTI ATGAA 9 cut(s) 148, 468, 527, 713, 760, 828, 954, 1019, 1431
TspGWI ACGGA 3 cut(s) 9, 220, 1170
TspRI CASTG 2 cut(s) 396, 1260
Vha464I CTTAAG 1 cut(s) 340
XapI RAATTY 4 cut(s) 196, 458, 644, 815
XceI RCATGY 1 cut(s) 1083
XspI CTAG 1 cut(s) 381
ZrmI AGTACT 1 cut(s) 113
Zsp2I ATGCAT 3 cut(s) 6, 972, 1285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.