Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007668

Physical Location & Seq

Genomic Coordinates Forward (+)

48595802 .. 48597688

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0333000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGAGCCAGATTGGGCAAGTTTACCTAAGCACCTTTTGGATTCAGTTTTAGAGAAGTTGGTGTCACTATCAGACTACTTGCGATTCAGCATTGTTTGTAAGTCATGGTATTATGTAGCAAAAGATAATCAAATCCAACGCGCTAAGATGACAGCTCCAATGCTCTTGATCTGTGCTAACAAAAGACATTCATGGAACTTATACAGCATCGTGGATGACAAGGTCTTTGATTTGCAACTAAGTGTGCCAAATAAGCGATATTGTGGCTCTTCCTTTGGATGGTTGATAGCTGTTGAGAAGAATTTTGCAATAACCCTAATCAATCCGTTTCTTAGGGTTAAAGGTAGGAGGAAGAAAGAAAACTCAATCATTCGGCTTCCTTCAATGCGGTTACCTCCAAGCAATTCTGAAAGGCGTAGATGGTCTAGACAATGCAACCATTATGTTTTCAAGGCCACTATGTCAGCAGACCCCATAGCAGATGCAGAGGATTGTATTGTGGTGGTCATATATAGGGAATTTTGTCAAATGGCTTTCATTAGGCTTGGTAAAGCCACAACGTGGACTTACATTGATACCGGTGTTGATAGACTGGGGACCTTAATTCAAGAAGTCACTAATGTTGAAGATAAATTTTACGCTGTTGATCAGAAGTTTCGGCTTTTATCCTTTGGTGTCACTGCTGAGTCCAACCCAAATGTAGAAGTGGTTGCATGCATGACCCGACGACCAGCTCTGAGCAAGAGATATCTCGTATATTCAATCGAGAAAGAATTATTGATGGTTATTAGGTATGTGGCATATGATGGTGGAAAACGTTCGACGGTGGGATTCTTGGTTTTCGAATTGAATTTTGACAAGCGTGAATGGGTTGCCAAAGACAACTTAGGTGATGATGTTGCGCTCTTTGTGGGTGATAGCGCTTCTGTAACTGTGCCGGCTTCAAAATCAGGATGTCTATCAAATTGCATATACTTTGTCCATGATAATGATCGTAATGGATATGATATTGATCGACGCTATCATTTAGATTTTGGTGTTTACAATGTCAAAAGTAAAAGCATTTCACAACCTTACACCTCGCATGCCAAGAGCCTCGTGGAAATGACTGATTATGAACCAGTTTGGGTCAAACCAACTTTAAATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

383

Amino Acids

44.06

Weight (kDa)

8.96

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	5 - 44	6.2e-07	F-box-like
Beta-prop_KIB1-4	PF03478	67 - 349	4.9e-43	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24640 AT2G24640 AT4G31670
fragaria_vesca	FvH4_2g37100
malus_domestica	MD08G1047300.v1.1 MD15G1046600.v1.1
prunus_persica	Prupe.1G401000_v2.0.a1 Prupe.1G401000_v2.0.a1
pyrus_communis	pycom08g03970 pycom15g04430
rosa_chinensis	RchiOBHm_Chr6g0304691
rosa_multiflora	Rmu_sc0003341.1_g000007
rosa_roxburghii	Rroxscaffold_7G00163590
rosa_rugosa	Rorug06G0333000 Rorug06G0333100 Rorug06G0333200 Rorug06G0333300 Rorug06G0333400 Rorug06G0333500
rosa_samantha	Rh6AG445600 Rh6BG456300 Rh6CG458500 Rh6DG445700
rosa_wichuraiana	Rw6G038750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	561
AccII	CGCG	1 cut(s)	141
AciI	CCGC	1 cut(s)	388
AclI	AACGTT	1 cut(s)	817
AcsI	RAATTY	5 cut(s)	301, 518, 632, 850, 1144
AdeI	CACNNNGTG	1 cut(s)	561
AfeI	AGCGCT	1 cut(s)	922
AfiI	CCNNNNNNNGG	2 cut(s)	279, 561
AgeI	ACCGGT	1 cut(s)	578
AgsI	TTSAA	7 cut(s)	384, 451, 608, 626, 762, 850, 945
AluBI	AGCT	3 cut(s)	155, 290, 734
AluI	AGCT	3 cut(s)	155, 290, 734
Aor51HI	AGCGCT	1 cut(s)	922
AoxI	GGCC	1 cut(s)	453
ApoI	RAATTY	5 cut(s)	301, 518, 632, 850, 1144
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AsiGI	ACCGGT	1 cut(s)	578
Asp700I	GAANNNNTTC	1 cut(s)	817
AspLEI	GCGC	3 cut(s)	143, 904, 923
AspS9I	GGNCC	1 cut(s)	597
AsuHPI	GGTGA	2 cut(s)	902, 926
AsuII	TTCGAA	1 cut(s)	843
AvaII	GGWCC	1 cut(s)	597
BaeI	ACNNNNGTAYC	2 cut(s)	567, 600
BauI	CACGAG	1 cut(s)	1097
BccI	CCATC	4 cut(s)	273, 414, 775, 800
BclI	TGATCA	1 cut(s)	646
BfaI	CTAG	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	924
Bme18I	GGWCC	1 cut(s)	597
BmgT120I	GGNCC	1 cut(s)	597
BmiI	GGNNCC	2 cut(s)	6, 598
BmrI	ACTGGG	1 cut(s)	602
BmsI	GCATC	2 cut(s)	216, 472
BmuI	ACTGGG	1 cut(s)	602
Bpu10I	CCTNAGC	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	843
BsaBI	GATNNNNATC	3 cut(s)	958, 990, 1011
BsaWI	WCCGGW	1 cut(s)	578
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 561
Bse118I	RCCGGY	2 cut(s)	578, 937
Bse1I	ACTGG	2 cut(s)	597, 1121
Bse8I	GATNNNNATC	3 cut(s)	958, 990, 1011
BseGI	GGATG	3 cut(s)	220, 284, 959
BseJI	GATNNNNATC	3 cut(s)	958, 990, 1011
BseLI	CCNNNNNNNGG	2 cut(s)	279, 561
BseMII	CTCAG	2 cut(s)	675, 728
BseNI	ACTGG	2 cut(s)	597, 1121
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	455
BshTI	ACCGGT	1 cut(s)	578
BsiSI	CCGG	2 cut(s)	579, 938
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	2 cut(s)	279, 561
BsmFI	GGGAC	1 cut(s)	610
BsnI	GGCC	1 cut(s)	455
Bsp119I	TTCGAA	1 cut(s)	843
Bsp143I	GATC	4 cut(s)	168, 646, 991, 1012
BspACI	CCGC	1 cut(s)	388
BspANI	GGCC	1 cut(s)	455
BspCNI	CTCAG	2 cut(s)	676, 729
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	6, 598
BspQI	GCTCTTC	1 cut(s)	274
BspT104I	TTCGAA	1 cut(s)	843
BsrFI	RCCGGY	2 cut(s)	578, 937
BsrI	ACTGG	2 cut(s)	597, 1121
BssAI	RCCGGY	2 cut(s)	578, 937
BssMI	GATC	4 cut(s)	168, 646, 991, 1012
BssSI	CACGAG	1 cut(s)	1097
Bst2BI	CACGAG	1 cut(s)	1097
Bst4CI	ACNGT	2 cut(s)	826, 934
Bst6I	CTCTTC	1 cut(s)	274
BstBI	TTCGAA	1 cut(s)	843
BstC8I	GCNNGC	3 cut(s)	715, 939, 1086
BstDEI	CTNAG	7 cut(s)	27, 144, 239, 332, 684, 737, 886
BstEII	GGTNACC	1 cut(s)	390
BstF5I	GGATG	3 cut(s)	220, 284, 959
BstFNI	CGCG	1 cut(s)	141
BstH2I	RGCGCY	1 cut(s)	924
BstHHI	GCGC	3 cut(s)	143, 904, 923
BstKTI	GATC	4 cut(s)	171, 649, 994, 1015
BstMBI	GATC	4 cut(s)	168, 646, 991, 1012
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNSI	RCATGY	2 cut(s)	717, 1088
BstPI	GGTNACC	1 cut(s)	390
BstUI	CGCG	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	455
BtsCI	GGATG	3 cut(s)	220, 284, 959
BtsI	GCAGTG	1 cut(s)	678
BtsIMutI	CAGTG	1 cut(s)	678
Cac8I	GCNNGC	3 cut(s)	715, 939, 1086
CfoI	GCGC	3 cut(s)	143, 904, 923
Cfr10I	RCCGGY	2 cut(s)	578, 937
Cfr13I	GGNCC	1 cut(s)	597
CseI	GACGC	1 cut(s)	1026
CspAI	ACCGGT	1 cut(s)	578
CviAII	CATG	6 cut(s)	105, 192, 714, 718, 983, 1085
DdeI	CTNAG	7 cut(s)	27, 144, 239, 332, 684, 737, 886
DpnI	GATC	4 cut(s)	170, 648, 993, 1014
DpnII	GATC	4 cut(s)	168, 646, 991, 1012
DraI	TTTAAA	1 cut(s)	1143
DraIII	CACNNNGTG	1 cut(s)	561
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
Eco32I	GATATC	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	597
Eco47III	AGCGCT	1 cut(s)	922
Eco91I	GGTNACC	1 cut(s)	390
EcoO109I	RGGNCCY	1 cut(s)	597
EcoO65I	GGTNACC	1 cut(s)	390
EcoRV	GATATC	1 cut(s)	749
EcoT22I	ATGCAT	1 cut(s)	719
FaeI	CATG	6 cut(s)	108, 195, 717, 721, 986, 1088
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	6 cut(s)	104, 191, 713, 717, 982, 1084
FauNDI	CATATG	1 cut(s)	802
FbaI	TGATCA	1 cut(s)	646
FokI	GGATG	3 cut(s)	227, 291, 966
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	3 cut(s)	142, 903, 922
HaeII	RGCGCY	1 cut(s)	924
HaeIII	GGCC	1 cut(s)	455
HapII	CCGG	2 cut(s)	579, 938
HgaI	GACGC	1 cut(s)	1026
HhaI	GCGC	3 cut(s)	143, 904, 923
Hin1II	CATG	6 cut(s)	108, 195, 717, 721, 986, 1088
Hin6I	GCGC	3 cut(s)	141, 902, 921
HinP1I	GCGC	3 cut(s)	141, 902, 921
HinfI	GANTC	4 cut(s)	41, 84, 686, 831
HpaII	CCGG	2 cut(s)	579, 938
HphI	GGTGA	2 cut(s)	902, 926
Hpy166II	GTNNAC	3 cut(s)	23, 564, 1042
Hpy188I	TCNGA	4 cut(s)	73, 409, 651, 738
Hpy188III	TCNNGA	5 cut(s)	166, 426, 608, 766, 951
Hpy8I	GTNNAC	3 cut(s)	23, 564, 1042
Hpy99I	CGWCG	3 cut(s)	729, 826, 1020
HpyAV	CCTTC	1 cut(s)	390
HpyCH4III	ACNGT	2 cut(s)	826, 934
HpyCH4IV	ACGT	2 cut(s)	560, 817
HpyCH4V	TGCA	7 cut(s)	235, 308, 435, 485, 713, 717, 969
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	7 cut(s)	27, 144, 239, 332, 684, 737, 886
HpySE526I	ACGT	2 cut(s)	560, 817
Hsp92II	CATG	6 cut(s)	108, 195, 717, 721, 986, 1088
HspAI	GCGC	3 cut(s)	141, 902, 921
KroI	GCCGGC	1 cut(s)	937
KroNI	GCCGGC	1 cut(s)	939
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	4 cut(s)	168, 646, 991, 1012
LguI	GCTCTTC	1 cut(s)	274
LmnI	GCTCC	2 cut(s)	4, 160
LpnPI	CCDG	7 cut(s)	21, 578, 592, 744, 936, 951, 1134
LweI	GCATC	2 cut(s)	216, 472
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	2 cut(s)	560, 817
MaeIII	GTNAC	5 cut(s)	63, 390, 613, 676, 928
MalI	GATC	4 cut(s)	170, 648, 993, 1014
MboI	GATC	4 cut(s)	168, 646, 991, 1012
MboII	GAAGA	4 cut(s)	261, 310, 364, 638
MlyI	GAGTC	1 cut(s)	695
MmeI	TCCRAC	2 cut(s)	160, 714
MnlI	CCTC	5 cut(s)	342, 405, 481, 1090, 1106
Mph1103I	ATGCAT	1 cut(s)	719
MroNI	GCCGGC	1 cut(s)	937
MroXI	GAANNNNTTC	1 cut(s)	817
MseI	TTAA	3 cut(s)	339, 602, 1142
MslI	CAYNNNNRTG	1 cut(s)	987
MspI	CCGG	2 cut(s)	579, 938
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	253
NaeI	GCCGGC	1 cut(s)	939
NdeI	CATATG	1 cut(s)	802
NdeII	GATC	4 cut(s)	168, 646, 991, 1012
NgoMIV	GCCGGC	1 cut(s)	937
NlaIII	CATG	6 cut(s)	108, 195, 717, 721, 986, 1088
NlaIV	GGNNCC	2 cut(s)	6, 598
NmuCI	GTSAC	3 cut(s)	63, 613, 676
NsiI	ATGCAT	1 cut(s)	719
NspI	RCATGY	2 cut(s)	717, 1088
NspV	TTCGAA	1 cut(s)	843
PaeI	GCATGC	2 cut(s)	717, 1088
PciSI	GCTCTTC	1 cut(s)	274
PdiI	GCCGGC	1 cut(s)	939
PdmI	GAANNNNTTC	1 cut(s)	817
PfeI	GAWTC	3 cut(s)	41, 84, 831
PflFI	GACNNNGTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	561
PinAI	ACCGGT	1 cut(s)	578
PleI	GAGTC	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	694
PpuMI	RGGWCCY	1 cut(s)	597
Psp1406I	AACGTT	1 cut(s)	817
Psp5II	RGGWCCY	1 cut(s)	597
PspEI	GGTNACC	1 cut(s)	390
PspN4I	GGNNCC	2 cut(s)	6, 598
PspPI	GGNCC	1 cut(s)	597
PspPPI	RGGWCCY	1 cut(s)	597
PsyI	GACNNNGTC	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	987
SapI	GCTCTTC	1 cut(s)	274
SaqAI	TTAA	3 cut(s)	339, 602, 1142
Sau3AI	GATC	4 cut(s)	168, 646, 991, 1012
Sau96I	GGNCC	1 cut(s)	597
SchI	GAGTC	1 cut(s)	695
SfaNI	GCATC	2 cut(s)	216, 472
SfuI	TTCGAA	1 cut(s)	843
SinI	GGWCC	1 cut(s)	597
SmiMI	CAYNNNNRTG	1 cut(s)	987
SphI	GCATGC	2 cut(s)	717, 1088
SsiI	CCGC	1 cut(s)	388
SspMI	CTAG	1 cut(s)	426
TaaI	ACNGT	2 cut(s)	826, 934
TaiI	ACGT	2 cut(s)	563, 820
TaqI	TCGA	4 cut(s)	765, 821, 843, 1015
TfiI	GAWTC	3 cut(s)	41, 84, 831
Tru1I	TTAA	3 cut(s)	339, 602, 1142
Tru9I	TTAA	3 cut(s)	339, 602, 1142
TscAI	CASTG	1 cut(s)	685
TseFI	GTSAC	3 cut(s)	63, 613, 676
Tsp45I	GTSAC	3 cut(s)	63, 613, 676
TspDTI	ATGAA	3 cut(s)	180, 526, 1131
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	685
Tth111I	GACNNNGTC	1 cut(s)	221
Van91I	CCANNNNNTGG	1 cut(s)	561
VpaK11BI	GGWCC	1 cut(s)	597
XapI	RAATTY	5 cut(s)	301, 518, 632, 850, 1144
XbaI	TCTAGA	1 cut(s)	425
XceI	RCATGY	2 cut(s)	717, 1088
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1096
XmnI	GAANNNNTTC	1 cut(s)	817
XspI	CTAG	1 cut(s)	426
Zsp2I	ATGCAT	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.