Rorug06G0333400

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007668
Physical Location & Seq
Reverse (-)
48607412 .. 48608635
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0333400.1

Sequence Viewer

Length: 768 bp
ATGGCTTTGGCCAATATTCCAATGCTTCTTTCCCTTTTGATGGCTTTGTGTGGAGTCTGCTTTGGTACCATTTACCAAGTGGGTGACTCTAACGGGTGGACAGACAAAGGTGTTGACTATAAGACCTGGGCATCTACCAAAAACTTCACCGTTGGAGACATTCTTCATTTTAAGTATGACAGAAAGGAGAACAATGTAGTGAGAGTGTTGCATAAAGCATTTAGGTCATGCAACCCAAAGGGTAAAATCTACAAGACGCGCACCGGCGACGATTATATACGCTTGAATAGACCTGGAAACTTCTTCTTCATTTGTAGTGTCAATGGACATTGCCGCTCTGGCCAGAAGGTTCATGTTAGCGTTTCTAAGTCAGTTCCAAGTGTCAGTCCTGGAACAGCCCCAACCCTACCACCGGTACCCAGTTCTAGTCCACTTCGGAGTCCAATTGCCAGCCCAACATCTCCCACAGCCACCCCGACTGGCGCCCCGAAAGGTGCACCCATTGCCTCCCCAAAAGGTGCACCCATTGCCTCCCCAAAAGGTGCACCCACTGCCGCCCCAAAAGGTGCACCCACTGCCGCCCCAACAACTCCCCCAACGGCTGATGGACCACCAAGTGCAGACTCTCCTCCTGATCTTCCTATAGAACTGATCCCAGCGCCTAAGGCACCTCCTCCTAACCCGCCCAAGAAGAGCAGTGCTCAATCCATTCACTCCTCTATGCTGTTCTTGATGGCAATGGGGTTTATTGCCTATATTGTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UCH zf-MYND

Protein Analysis

255

Amino Acids

26.65

Weight (kDa)

9.76

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 115 8.1e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 65, 415
AccB1I GGYRCC 4 cut(s) 65, 415, 482, 667
AccBSI CCGCTC 1 cut(s) 336
AccII CGCG 1 cut(s) 259
AciI CCGC 4 cut(s) 334, 555, 579, 683
AclWI GGATC 1 cut(s) 646
AcoI YGGCCR 2 cut(s) 9, 340
AcyI GRCGYC 1 cut(s) 483
AdeI CACNNNGTG 1 cut(s) 617
AfaI GTAC 2 cut(s) 67, 417
AfiI CCNNNNNNNGG 2 cut(s) 40, 412
AgeI ACCGGT 1 cut(s) 412
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 3 cut(s) 125, 292, 388
AjuI GAANNNNNNNTTGG 2 cut(s) 13, 45
Alw21I GWGCWC 5 cut(s) 499, 523, 547, 571, 703
Alw26I GTCTC 1 cut(s) 150
Alw44I GTGCAC 4 cut(s) 495, 519, 543, 567
AlwI GGATC 1 cut(s) 646
AoxI GGCC 2 cut(s) 9, 340
ApaLI GTGCAC 4 cut(s) 495, 519, 543, 567
AsiGI ACCGGT 1 cut(s) 412
Asp718I GGTACC 2 cut(s) 65, 415
AspLEI GCGC 3 cut(s) 261, 485, 661
AspS9I GGNCC 1 cut(s) 608
AsuHPI GGTGA 2 cut(s) 95, 139
AvaII GGWCC 1 cut(s) 608
AxyI CCTNAGG 1 cut(s) 663
BaeGI GKGCMC 4 cut(s) 499, 523, 547, 571
BalI TGGCCA 2 cut(s) 11, 342
BanI GGYRCC 4 cut(s) 65, 415, 482, 667
Bbv12I GWGCWC 5 cut(s) 499, 523, 547, 571, 703
BccI CCATC 3 cut(s) 34, 599, 727
BceAI ACGGC 1 cut(s) 615
BciT130I CCWGG 3 cut(s) 127, 294, 390
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 642
BfoI RGCGCY 2 cut(s) 486, 662
BglI GCCNNNNNGGC 1 cut(s) 339
BisI GCNGC 3 cut(s) 334, 555, 579
BlsI GCNGC 3 cut(s) 335, 556, 580
Bme1390I CCNGG 3 cut(s) 127, 294, 390
Bme18I GGWCC 1 cut(s) 608
BmgT120I GGNCC 1 cut(s) 608
BmiI GGNNCC 4 cut(s) 67, 417, 484, 669
BmrFI CCNGG 3 cut(s) 127, 294, 390
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 140
BmuI ACTGGG 1 cut(s) 414
BplI GAGNNNNNCTC 2 cut(s) 685, 717
BsaHI GRCGYC 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 412
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 412
Bse118I RCCGGY 2 cut(s) 263, 412
Bse1I ACTGG 2 cut(s) 420, 484
Bse21I CCTNAGG 1 cut(s) 663
Bse3DI GCAATG 4 cut(s) 328, 501, 525, 744
BseBI CCWGG 3 cut(s) 127, 294, 390
BseDI CCNNGG 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 40, 412
BseMI GCAATG 4 cut(s) 328, 501, 525, 744
BseNI ACTGG 2 cut(s) 420, 484
BseRI GAGGAG 3 cut(s) 618, 663, 706
BseSI GKGCMC 4 cut(s) 499, 523, 547, 571
BseYI CCCAGC 1 cut(s) 655
BsgI GTGCAG 1 cut(s) 639
Bsh1236I CGCG 1 cut(s) 259
BshFI GGCC 2 cut(s) 11, 342
BshNI GGYRCC 4 cut(s) 65, 415, 482, 667
BshTI ACCGGT 1 cut(s) 412
BsiHKAI GWGCWC 5 cut(s) 499, 523, 547, 571, 703
BsiSI CCGG 2 cut(s) 264, 413
BslI CCNNNNNNNGG 2 cut(s) 40, 412
BsmAI GTCTC 1 cut(s) 150
BsnI GGCC 2 cut(s) 11, 342
Bsp1286I GDGCHC 5 cut(s) 499, 523, 547, 571, 703
Bsp143I GATC 2 cut(s) 634, 651
BspACI CCGC 4 cut(s) 334, 555, 579, 683
BspANI GGCC 2 cut(s) 11, 342
BspFNI CGCG 1 cut(s) 259
BspLI GGNNCC 4 cut(s) 67, 417, 484, 669
BspPI GGATC 1 cut(s) 646
BspQI GCTCTTC 1 cut(s) 686
BspT107I GGYRCC 4 cut(s) 65, 415, 482, 667
BsrBI CCGCTC 1 cut(s) 336
BsrDI GCAATG 4 cut(s) 328, 501, 525, 744
BsrFI RCCGGY 2 cut(s) 263, 412
BsrI ACTGG 2 cut(s) 420, 484
BssAI RCCGGY 2 cut(s) 263, 412
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 2 cut(s) 634, 651
BssNI GRCGYC 1 cut(s) 483
Bst2UI CCWGG 3 cut(s) 127, 294, 390
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 686
BstACI GRCGYC 1 cut(s) 483
BstAPI GCANNNNNTGC 4 cut(s) 503, 527, 551, 575
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 2 cut(s) 366, 663
BstFNI CGCG 1 cut(s) 259
BstH2I RGCGCY 2 cut(s) 486, 662
BstHHI GCGC 3 cut(s) 261, 485, 661
BstKTI GATC 2 cut(s) 637, 654
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 634, 651
BstMWI GCNNNNNNNGC 6 cut(s) 339, 503, 527, 551, 575, 665
BstNI CCWGG 3 cut(s) 127, 294, 390
BstSCI CCNGG 3 cut(s) 125, 292, 388
BstSFI CTRYAG 1 cut(s) 642
BstSLI GKGCMC 4 cut(s) 499, 523, 547, 571
BstUI CGCG 1 cut(s) 259
Bsu36I CCTNAGG 1 cut(s) 663
BsuRI GGCC 2 cut(s) 11, 342
BtsI GCAGTG 3 cut(s) 549, 573, 703
BtsIMutI CAGTG 3 cut(s) 549, 573, 703
Cac8I GCNNGC 1 cut(s) 451
CfoI GCGC 3 cut(s) 261, 485, 661
Cfr10I RCCGGY 2 cut(s) 263, 412
Cfr13I GGNCC 1 cut(s) 608
CseI GACGC 1 cut(s) 265
Csp6I GTAC 2 cut(s) 66, 416
CspAI ACCGGT 1 cut(s) 412
CviAII CATG 2 cut(s) 228, 353
CviJI RGCY 8 cut(s) 5, 11, 44, 342, 398, 453, 470, 602
CviKI_1 RGCY 8 cut(s) 5, 11, 44, 342, 398, 453, 470, 602
CviQI GTAC 2 cut(s) 66, 416
DdeI CTNAG 2 cut(s) 366, 663
DinI GGCGCC 1 cut(s) 484
DpnI GATC 2 cut(s) 636, 653
DpnII GATC 2 cut(s) 634, 651
DraIII CACNNNGTG 1 cut(s) 617
EaeI YGGCCR 2 cut(s) 9, 340
Eam1104I CTCTTC 1 cut(s) 686
EarI CTCTTC 1 cut(s) 686
Eco47I GGWCC 1 cut(s) 608
Eco81I CCTNAGG 1 cut(s) 663
EcoRII CCWGG 3 cut(s) 125, 292, 388
EgeI GGCGCC 1 cut(s) 484
EheI GGCGCC 1 cut(s) 484
FaeI CATG 2 cut(s) 231, 356
FatI CATG 2 cut(s) 227, 352
FauI CCCGC 1 cut(s) 690
Fnu4HI GCNGC 3 cut(s) 334, 555, 579
Fsp4HI GCNGC 3 cut(s) 334, 555, 579
FspBI CTAG 1 cut(s) 426
GlaI GCGC 3 cut(s) 260, 484, 660
GluI GCNGC 3 cut(s) 334, 555, 579
GsaI CCCAGC 1 cut(s) 659
HaeII RGCGCY 2 cut(s) 486, 662
HaeIII GGCC 2 cut(s) 11, 342
HapII CCGG 2 cut(s) 264, 413
HgaI GACGC 1 cut(s) 265
HhaI GCGC 3 cut(s) 261, 485, 661
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 2 cut(s) 231, 356
Hin6I GCGC 3 cut(s) 259, 483, 659
HinP1I GCGC 3 cut(s) 259, 483, 659
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 4 cut(s) 54, 86, 439, 623
HpaII CCGG 2 cut(s) 264, 413
HphI GGTGA 2 cut(s) 95, 139
Hpy166II GTNNAC 7 cut(s) 99, 115, 431, 497, 521, 545, 569
Hpy188I TCNGA 2 cut(s) 438, 767
Hpy188III TCNNGA 2 cut(s) 632, 730
Hpy8I GTNNAC 7 cut(s) 99, 115, 431, 497, 521, 545, 569
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 7 cut(s) 211, 231, 497, 521, 545, 569, 620
HpyF10VI GCNNNNNNNGC 6 cut(s) 339, 503, 527, 551, 575, 665
HpyF3I CTNAG 2 cut(s) 366, 663
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 2 cut(s) 231, 356
HspAI GCGC 3 cut(s) 259, 483, 659
KasI GGCGCC 1 cut(s) 482
KpnI GGTACC 2 cut(s) 69, 419
Kzo9I GATC 2 cut(s) 634, 651
LguI GCTCTTC 1 cut(s) 686
LweI GCATC 1 cut(s) 140
MaeI CTAG 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 83
MalI GATC 2 cut(s) 636, 653
MbiI CCGCTC 1 cut(s) 336
MboI GATC 2 cut(s) 634, 651
MboII GAAGA 5 cut(s) 155, 295, 298, 629, 703
MfeI CAATTG 1 cut(s) 444
MhlI GDGCHC 5 cut(s) 499, 523, 547, 571, 703
MlsI TGGCCA 2 cut(s) 11, 342
MluCI AATT 1 cut(s) 444
MluNI TGGCCA 2 cut(s) 11, 342
Mly113I GGCGCC 1 cut(s) 483
MlyI GAGTC 4 cut(s) 63, 80, 448, 617
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 6 cut(s) 517, 541, 639, 681, 684, 727
Mox20I TGGCCA 2 cut(s) 11, 342
MscI TGGCCA 2 cut(s) 11, 342
MseI TTAA 1 cut(s) 171
Msp20I TGGCCA 2 cut(s) 11, 342
MspI CCGG 2 cut(s) 264, 413
MspR9I CCNGG 3 cut(s) 127, 294, 390
MunI CAATTG 1 cut(s) 444
MvaI CCWGG 3 cut(s) 127, 294, 390
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 6 cut(s) 339, 503, 527, 551, 575, 665
NarI GGCGCC 1 cut(s) 483
NdeII GATC 2 cut(s) 634, 651
NlaIII CATG 2 cut(s) 231, 356
NlaIV GGNNCC 4 cut(s) 67, 417, 484, 669
NmuCI GTSAC 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 686
PfoI TCCNGGA 1 cut(s) 388
PinAI ACCGGT 1 cut(s) 412
PkrI GCNGC 3 cut(s) 335, 556, 580
PleI GAGTC 4 cut(s) 62, 80, 447, 617
PluTI GGCGCC 1 cut(s) 486
PpsI GAGTC 4 cut(s) 62, 80, 447, 617
Psp6I CCWGG 3 cut(s) 125, 292, 388
PspFI CCCAGC 1 cut(s) 655
PspGI CCWGG 3 cut(s) 125, 292, 388
PspN4I GGNNCC 4 cut(s) 67, 417, 484, 669
PspPI GGNCC 1 cut(s) 608
RsaI GTAC 2 cut(s) 67, 417
RsaNI GTAC 2 cut(s) 66, 416
SapI GCTCTTC 1 cut(s) 686
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 3 cut(s) 334, 555, 579
Sau3AI GATC 2 cut(s) 634, 651
Sau96I GGNCC 1 cut(s) 608
SchI GAGTC 4 cut(s) 63, 80, 448, 617
ScrFI CCNGG 3 cut(s) 127, 294, 390
SduI GDGCHC 5 cut(s) 499, 523, 547, 571, 703
SfaNI GCATC 1 cut(s) 140
SfcI CTRYAG 1 cut(s) 642
SfoI GGCGCC 1 cut(s) 484
SgrAI CRCCGGYG 1 cut(s) 263
SinI GGWCC 1 cut(s) 608
Sse9I AATT 1 cut(s) 444
SsiI CCGC 4 cut(s) 334, 555, 579, 683
SspDI GGCGCC 1 cut(s) 482
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 3 cut(s) 125, 292, 388
TaaI ACNGT 1 cut(s) 151
TasI AATT 1 cut(s) 444
TauI GCSGC 3 cut(s) 336, 557, 581
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 3 cut(s) 556, 580, 703
TseFI GTSAC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 155, 298, 341
TspRI CASTG 3 cut(s) 556, 580, 703
VneI GTGCAC 4 cut(s) 495, 519, 543, 567
VpaK11BI GGWCC 1 cut(s) 608
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.