Rorug06G0333300

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007668
Physical Location & Seq
Reverse (-)
48603179 .. 48606483
3305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0333300.1

Sequence Viewer

Length: 1104 bp
ATGGACTCCGAACCCGACTTGCAGAAAACCCCAACAGCCAGGCACAAATGTCCTGCCTGTTACAAGCAATATAAAAAGAAAGAACATCTCATTGAGCACATGAAGGTTGCTTTCCACTCAGCTCATGATCCTAGTTGTGGAGTGTGTAGAAAGCACTGCAAATCTTTTGAGTCATTGAGGGAACATCTTACTGGTCCATTGGCAAAAGCAAATTGCATGAAAATTTTCTCCAAACAAGGGTGTGATTTATGTTTGAAGCTCTTTGATAGCCCTGCTTCTCTTAGCCAGCATAGAGAAATGTGTCTCCTATCTGCACCTGCTCCTATTGGAACAGTGATAATTGCTTGTGCAGAATCTCAATCTTATTTGAACTTGTGTGGTGAAAACCACTTCGATAACCGTCCGGAAGCAATTGCTGTGGATTGTGAAATGGTTGGCGGTGGAAGTGATGGATCACTGGACCTGTGTGCAAGGGTGTGCCTGACAGATGAAGACGAGAATATCCTATTCCACACCTATGTGCGGCCTCAAATTTCTATCACGAATTACAGATATGAAATTACTGGGTTAACAGAAGATCATCTTAGAAATGCCATGCCACTCAAAGAAGTGCACGACAAAATCTTGAAAGTTTTGTACAATGGAGAGTCTATTGGGAGATCAAGTTTGGATGGGGAAAAGGCCAAGCTTCTTGTGGGGCATGATTTGGAGCATGATTTGGATTGCATGGGAATGTATTATCCTGAGCACCTGCTGAGGGATACAGCAAAGTACCATCCACTGATGAAAACAAATCTAGTCAGTCACTCACTTAAGTATCTCACCAGAACATATCTGGGGTATGATATCCAGTCTGGTATGCATGATCCTTTTGAAGATTGTGTGGCTGTAATGAGACTGTACAAGAGATTTCGAGCCCTAGATCATCAGACAGAAGGCATTGTTGCATCACTTGCTACGAAGTATTCAAACGACATCCATGGGAATTTTGATTCTTGGACAACTGAAAAACTTGAGAAGATGACACCTGATGAGCTTTATGAATTGTCAAAACCAAACTACAAGTGCTGGTGTCTGGATAGAAGGCAAGCACTGCAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UCH zf-MYND

Protein Analysis

367

Amino Acids

41.78

Weight (kDa)

6.28

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_T PF00929 138 - 301 1.9e-11 Exonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 325, 759
Acc36I ACCTGC 2 cut(s) 325, 759
AccIII TCCGGA 1 cut(s) 403
AciI CCGC 2 cut(s) 438, 523
AclWI GGATC 3 cut(s) 122, 460, 860
AcsI RAATTY 3 cut(s) 222, 531, 985
AfaI GTAC 3 cut(s) 638, 773, 902
AfiI CCNNNNNNNGG 4 cut(s) 137, 237, 522, 757
AflII CTTAAG 1 cut(s) 812
AgsI TTSAA 5 cut(s) 256, 370, 628, 875, 969
AjnI CCWGG 1 cut(s) 38
AleI CACNNNNGTG 1 cut(s) 518
AluBI AGCT 4 cut(s) 122, 259, 688, 1036
AluI AGCT 4 cut(s) 122, 259, 688, 1036
Alw21I GWGCWC 3 cut(s) 99, 615, 750
Alw26I GTCTC 2 cut(s) 308, 889
Alw44I GTGCAC 1 cut(s) 611
AlwI GGATC 3 cut(s) 122, 460, 860
Aor13HI TCCGGA 1 cut(s) 403
AoxI GGCC 2 cut(s) 524, 681
ApaLI GTGCAC 1 cut(s) 611
ApoI RAATTY 3 cut(s) 222, 531, 985
Asp700I GAANNNNTTC 1 cut(s) 224
AspS9I GGNCC 2 cut(s) 194, 460
AsuHPI GGTGA 2 cut(s) 392, 814
AvaII GGWCC 2 cut(s) 194, 460
BaeGI GKGCMC 1 cut(s) 615
BaeI ACNNNNGTAYC 2 cut(s) 800, 833
BanII GRGCYC 1 cut(s) 919
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 3 cut(s) 99, 615, 750
BbvCI CCTCAGC 1 cut(s) 755
BccI CCATC 3 cut(s) 443, 665, 783
BciT130I CCWGG 1 cut(s) 40
BciVI GTATCC 1 cut(s) 754
BcoDI GTCTC 2 cut(s) 308, 889
BfaI CTAG 3 cut(s) 132, 797, 920
BfrI CTTAAG 1 cut(s) 812
BfuAI ACCTGC 2 cut(s) 325, 759
BfuI GTATCC 1 cut(s) 754
BisI GCNGC 1 cut(s) 524
BlsI GCNGC 1 cut(s) 525
Bme1390I CCNGG 1 cut(s) 40
Bme18I GGWCC 2 cut(s) 194, 460
BmgT120I GGNCC 2 cut(s) 194, 460
BmrFI CCNGG 1 cut(s) 40
BmrI ACTGGG 1 cut(s) 573
BmsI GCATC 1 cut(s) 956
BmuI ACTGGG 1 cut(s) 573
BpiI GAAGAC 1 cut(s) 498
Bpu10I CCTNAGC 2 cut(s) 744, 755
BpuEI CTTGAG 1 cut(s) 1034
BsaJI CCNNGG 1 cut(s) 979
BsaWI WCCGGW 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 649, 679
Bsc4I CCNNNNNNNGG 4 cut(s) 137, 237, 522, 757
Bse1I ACTGG 4 cut(s) 196, 462, 568, 850
BseAI TCCGGA 1 cut(s) 403
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 979
BseGI GGATG 3 cut(s) 676, 775, 975
BseLI CCNNNNNNNGG 4 cut(s) 137, 237, 522, 757
BseMII CTCAG 3 cut(s) 132, 735, 746
BseNI ACTGG 4 cut(s) 196, 462, 568, 850
BseSI GKGCMC 1 cut(s) 615
BsgI GTGCAG 2 cut(s) 297, 369
BshFI GGCC 2 cut(s) 526, 683
BsiHKAI GWGCWC 3 cut(s) 99, 615, 750
BsiSI CCGG 1 cut(s) 404
BslI CCNNNNNNNGG 4 cut(s) 137, 237, 522, 757
BsmAI GTCTC 2 cut(s) 308, 889
BsnI GGCC 2 cut(s) 526, 683
Bsp1286I GDGCHC 4 cut(s) 99, 615, 750, 919
Bsp13I TCCGGA 1 cut(s) 403
Bsp1407I TGTACA 2 cut(s) 636, 900
Bsp143I GATC 6 cut(s) 127, 452, 577, 659, 865, 922
Bsp19I CCATGG 1 cut(s) 979
BspACI CCGC 2 cut(s) 438, 523
BspANI GGCC 2 cut(s) 526, 683
BspCNI CTCAG 3 cut(s) 131, 736, 747
BspEI TCCGGA 1 cut(s) 403
BspHI TCATGA 1 cut(s) 124
BspMI ACCTGC 2 cut(s) 325, 759
BspPI GGATC 3 cut(s) 122, 460, 860
BspTI CTTAAG 1 cut(s) 812
BsrGI TGTACA 2 cut(s) 636, 900
BsrI ACTGG 4 cut(s) 196, 462, 568, 850
BssECI CCNNGG 1 cut(s) 979
BssMI GATC 6 cut(s) 127, 452, 577, 659, 865, 922
BssT1I CCWWGG 1 cut(s) 979
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 3 cut(s) 334, 401, 900
BstAFI CTTAAG 1 cut(s) 812
BstAPI GCANNNNNTGC 2 cut(s) 953, 1093
BstAUI TGTACA 2 cut(s) 636, 900
BstC8I GCNNGC 2 cut(s) 287, 1089
BstDEI CTNAG 6 cut(s) 118, 281, 584, 744, 755, 1101
BstDSI CCRYGG 1 cut(s) 979
BstF5I GGATG 3 cut(s) 676, 775, 975
BstKTI GATC 6 cut(s) 130, 455, 580, 662, 868, 925
BstMAI GTCTC 2 cut(s) 308, 889
BstMBI GATC 6 cut(s) 127, 452, 577, 659, 865, 922
BstMWI GCNNNNNNNGC 2 cut(s) 953, 1093
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstSLI GKGCMC 1 cut(s) 615
BstV2I GAAGAC 1 cut(s) 498
BsuI GTATCC 1 cut(s) 754
BsuRI GGCC 2 cut(s) 526, 683
BtgI CCRYGG 1 cut(s) 979
BtsCI GGATG 3 cut(s) 676, 775, 975
BtsI GCAGTG 2 cut(s) 154, 1091
BtsIMutI CAGTG 5 cut(s) 154, 339, 455, 779, 1091
BveI ACCTGC 2 cut(s) 325, 759
Cac8I GCNNGC 2 cut(s) 287, 1089
CciI TCATGA 1 cut(s) 124
Cfr13I GGNCC 2 cut(s) 194, 460
Csp6I GTAC 3 cut(s) 637, 772, 901
CspCI CAANNNNNGTGG 2 cut(s) 399, 434
CviAII CATG 9 cut(s) 100, 125, 217, 595, 701, 713, 727, 863, 980
CviQI GTAC 3 cut(s) 637, 772, 901
DdeI CTNAG 6 cut(s) 118, 281, 584, 744, 755, 1101
DpnI GATC 6 cut(s) 129, 454, 579, 661, 867, 924
DpnII GATC 6 cut(s) 127, 452, 577, 659, 865, 922
Eco130I CCWWGG 1 cut(s) 979
Eco24I GRGCYC 1 cut(s) 919
Eco32I GATATC 1 cut(s) 847
Eco47I GGWCC 2 cut(s) 194, 460
EcoRII CCWGG 1 cut(s) 38
EcoRV GATATC 1 cut(s) 847
EcoT14I CCWWGG 1 cut(s) 979
EcoT22I ATGCAT 1 cut(s) 864
EcoT38I GRGCYC 1 cut(s) 919
ErhI CCWWGG 1 cut(s) 979
FaeI CATG 9 cut(s) 103, 128, 220, 598, 704, 716, 730, 866, 983
FalI AAGNNNNNCTT 2 cut(s) 567, 599
FatI CATG 9 cut(s) 99, 124, 216, 594, 700, 712, 726, 862, 979
Fnu4HI GCNGC 1 cut(s) 524
FokI GGATG 3 cut(s) 683, 762, 962
FriOI GRGCYC 1 cut(s) 919
Fsp4HI GCNGC 1 cut(s) 524
FspBI CTAG 3 cut(s) 132, 797, 920
GluI GCNGC 1 cut(s) 524
HaeIII GGCC 2 cut(s) 526, 683
HapII CCGG 1 cut(s) 404
Hin1II CATG 9 cut(s) 103, 128, 220, 598, 704, 716, 730, 866, 983
HincII GTYRAC 1 cut(s) 570
HindII GTYRAC 1 cut(s) 570
HindIII AAGCTT 1 cut(s) 686
HinfI GANTC 5 cut(s) 5, 170, 353, 647, 992
HpaI GTTAAC 1 cut(s) 570
HpaII CCGG 1 cut(s) 404
HphI GGTGA 2 cut(s) 392, 814
Hpy166II GTNNAC 2 cut(s) 570, 613
Hpy188I TCNGA 2 cut(s) 10, 930
Hpy188III TCNNGA 6 cut(s) 125, 404, 541, 625, 743, 1076
Hpy8I GTNNAC 2 cut(s) 570, 613
HpyAV CCTTC 3 cut(s) 97, 929, 1077
HpyCH4III ACNGT 3 cut(s) 334, 401, 900
HpyF10VI GCNNNNNNNGC 2 cut(s) 953, 1093
HpyF3I CTNAG 6 cut(s) 118, 281, 584, 744, 755, 1101
Hsp92II CATG 9 cut(s) 103, 128, 220, 598, 704, 716, 730, 866, 983
Kpn2I TCCGGA 1 cut(s) 403
KspAI GTTAAC 1 cut(s) 570
Kzo9I GATC 6 cut(s) 127, 452, 577, 659, 865, 922
LmnI GCTCC 2 cut(s) 325, 709
LweI GCATC 1 cut(s) 956
MaeI CTAG 3 cut(s) 132, 797, 920
MaeIII GTNAC 2 cut(s) 59, 803
MalI GATC 6 cut(s) 129, 454, 579, 661, 867, 924
MboI GATC 6 cut(s) 127, 452, 577, 659, 865, 922
MboII GAAGA 4 cut(s) 503, 587, 887, 1030
MfeI CAATTG 1 cut(s) 411
MhlI GDGCHC 4 cut(s) 99, 615, 750, 919
MluCI AATT 9 cut(s) 211, 222, 339, 411, 531, 544, 558, 985, 1043
MlyI GAGTC 2 cut(s) 179, 656
MnlI CCTC 3 cut(s) 171, 537, 750
Mph1103I ATGCAT 1 cut(s) 864
MroI TCCGGA 1 cut(s) 403
MroXI GAANNNNTTC 1 cut(s) 224
MseI TTAA 2 cut(s) 569, 813
MslI CAYNNNNRTG 3 cut(s) 516, 518, 731
MspCI CTTAAG 1 cut(s) 812
MspI CCGG 1 cut(s) 404
MspR9I CCNGG 1 cut(s) 40
MunI CAATTG 1 cut(s) 411
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 2 cut(s) 953, 1093
NcoI CCATGG 1 cut(s) 979
NdeII GATC 6 cut(s) 127, 452, 577, 659, 865, 922
NlaIII CATG 9 cut(s) 103, 128, 220, 598, 704, 716, 730, 866, 983
NmuCI GTSAC 1 cut(s) 803
NsiI ATGCAT 1 cut(s) 864
OliI CACNNNNGTG 1 cut(s) 518
PagI TCATGA 1 cut(s) 124
PaqCI CACCTGC 2 cut(s) 325, 759
PdmI GAANNNNTTC 1 cut(s) 224
PfeI GAWTC 2 cut(s) 353, 992
PkrI GCNGC 1 cut(s) 525
PleI GAGTC 2 cut(s) 178, 655
PpsI GAGTC 2 cut(s) 178, 655
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PspPI GGNCC 2 cut(s) 194, 460
RsaI GTAC 3 cut(s) 638, 773, 902
RsaNI GTAC 3 cut(s) 637, 772, 901
RseI CAYNNNNRTG 3 cut(s) 516, 518, 731
SaqAI TTAA 2 cut(s) 569, 813
SatI GCNGC 1 cut(s) 524
Sau3AI GATC 6 cut(s) 127, 452, 577, 659, 865, 922
Sau96I GGNCC 2 cut(s) 194, 460
SchI GAGTC 2 cut(s) 179, 656
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 4 cut(s) 99, 615, 750, 919
SfaNI GCATC 1 cut(s) 956
SinI GGWCC 2 cut(s) 194, 460
SmiMI CAYNNNNRTG 3 cut(s) 516, 518, 731
SmlI CTYRAG 2 cut(s) 812, 1013
SmoI CTYRAG 2 cut(s) 812, 1013
Sse9I AATT 9 cut(s) 211, 222, 339, 411, 531, 544, 558, 985, 1043
SsiI CCGC 2 cut(s) 438, 523
SspMI CTAG 3 cut(s) 132, 797, 920
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 979
TaaI ACNGT 3 cut(s) 334, 401, 900
TaqI TCGA 2 cut(s) 393, 913
TasI AATT 9 cut(s) 211, 222, 339, 411, 531, 544, 558, 985, 1043
TatI WGTACW 2 cut(s) 636, 900
TauI GCSGC 1 cut(s) 526
TfiI GAWTC 2 cut(s) 353, 992
Tru1I TTAA 2 cut(s) 569, 813
Tru9I TTAA 2 cut(s) 569, 813
TscAI CASTG 5 cut(s) 161, 339, 462, 786, 1098
TseFI GTSAC 1 cut(s) 803
Tsp45I GTSAC 1 cut(s) 803
TspDTI ATGAA 6 cut(s) 116, 233, 504, 570, 800, 1056
TspRI CASTG 5 cut(s) 161, 339, 462, 786, 1098
Vha464I CTTAAG 1 cut(s) 812
VneI GTGCAC 1 cut(s) 611
VpaK11BI GGWCC 2 cut(s) 194, 460
XapI RAATTY 3 cut(s) 222, 531, 985
XcmI CCANNNNNNNNNTGG 2 cut(s) 691, 832
XmnI GAANNNNTTC 1 cut(s) 224
XspI CTAG 3 cut(s) 132, 797, 920
Zsp2I ATGCAT 1 cut(s) 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.