Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007668

Physical Location & Seq

Genomic Coordinates Reverse (-)

48610717 .. 48611705

Gene Structure 989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0333500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGATTCTACAAAAGCATTATATTTGCAGCCCTATTCTTCTGCATCACAAGGATTTGAAATAATTCCAATGGAACAGCATCAACATCATCATCATGCACCCCCGCCTCGACCTCCAGGTCCTCCTATTAAAGTGAACCTCAAAAGTAATTGTTTGAATTGTCAAGTGAAGCTGAAGAAAAAGTTGCAGAAGATGAGTGGGGTGAATGATGTGGACATAGTTCCAGAACAAGGTGGCACCGTAACAGTTTCAGGTAGCATAGACTCTAAGGTGCTCATGGAGGTGATCCGAAATAATTACAAAAAGGCCAAGTTACTTTGCCCCTTTGATCAGAAGGAGCCCTCCAAAAATACAGTTGGAAAAAAAATTTCGTGCTCTGATGATGAACATGATGATAGCGAGGACGACAAAGACCACAATTTTGCTGTAAACAATAGTAACAACGATGCCGGTCTAAGTGAACCGAAGAAAGAGAAGAAGACGAAGATGTGTGGTATAATGAGATGTTTTGGCAAGAAAAGTAACCCTATGGCCATGCGTCCACCTCCTCCCGGACCATCACCTGGGCCTCGGCCCCCCATGGGTTTTCCGACAAATGGATTTTTTCTTGGGGCGACAAGGCCCGGATTTCGGCCGGGAATGCCATGGATGCCGCCAATTGGGCCACCACCGCCATATGGGTATTTAGGGAGGCCGCCATTACCCACGGACTACGGATATCCTTTCCCGAGGTCGCCGCCAAGATCGAACCCTATGGTACACTACAGCAGTTATAGGGACAATTATCATCATCCATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

266

Amino Acids

29.58

Weight (kDa)

9.31

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24640 AT2G24640 AT4G31670
fragaria_vesca	FvH4_2g37100
malus_domestica	MD08G1047300.v1.1 MD15G1046600.v1.1
prunus_persica	Prupe.1G401000_v2.0.a1 Prupe.1G401000_v2.0.a1
pyrus_communis	pycom08g03970 pycom15g04430
rosa_chinensis	RchiOBHm_Chr6g0304691
rosa_multiflora	Rmu_sc0003341.1_g000007
rosa_roxburghii	Rroxscaffold_7G00163590
rosa_rugosa	Rorug06G0333000 Rorug06G0333100 Rorug06G0333200 Rorug06G0333300 Rorug06G0333400 Rorug06G0333500
rosa_samantha	Rh6AG445600 Rh6BG456300 Rh6CG458500 Rh6DG445700
rosa_wichuraiana	Rw6G038750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	117
AccB1I	GGYRCC	1 cut(s)	236
AccB7I	CCANNNNNTGG	1 cut(s)	563
AciI	CCGC	5 cut(s)	104, 653, 671, 695, 737
AclWI	GGATC	1 cut(s)	280
AcoI	YGGCCR	2 cut(s)	531, 632
AcsI	RAATTY	1 cut(s)	366
AcuI	CTGAAG	1 cut(s)	194
AfaI	GTAC	1 cut(s)	759
AfiI	CCNNNNNNNGG	8 cut(s)	230, 551, 563, 581, 596, 630, 659, 677
AgsI	TTSAA	2 cut(s)	59, 157
AjnI	CCWGG	2 cut(s)	115, 562
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
Alw21I	GWGCWC	2 cut(s)	276, 377
AlwI	GGATC	1 cut(s)	280
Ama87I	CYCGRG	1 cut(s)	727
AoxI	GGCC	8 cut(s)	306, 531, 566, 572, 620, 632, 662, 692
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	366
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
Asp700I	GAANNNNTTC	1 cut(s)	63
AspS9I	GGNCC	6 cut(s)	119, 554, 566, 573, 621, 662
AsuC2I	CCSGG	3 cut(s)	552, 624, 636
AsuHPI	GGTGA	3 cut(s)	214, 295, 552
AvaI	CYCGRG	1 cut(s)	727
AvaII	GGWCC	2 cut(s)	119, 554
BalI	TGGCCA	1 cut(s)	533
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	485
Bbv12I	GWGCWC	2 cut(s)	276, 377
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	565
BciT130I	CCWGG	2 cut(s)	117, 564
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	3 cut(s)	552, 624, 636
BfaI	CTAG	1 cut(s)	799
BfmI	CTRYAG	1 cut(s)	763
BglI	GCCNNNNNGGC	1 cut(s)	661
BisI	GCNGC	4 cut(s)	29, 653, 695, 737
BlsI	GCNGC	4 cut(s)	30, 654, 696, 738
Bme1390I	CCNGG	5 cut(s)	117, 552, 564, 624, 636
Bme18I	GGWCC	2 cut(s)	119, 554
BmeT110I	CYCGRG	1 cut(s)	727
BmgT120I	GGNCC	6 cut(s)	119, 554, 566, 573, 621, 662
BmiI	GGNNCC	3 cut(s)	238, 339, 575
BmrFI	CCNGG	5 cut(s)	117, 552, 564, 624, 636
BmsI	GCATC	4 cut(s)	53, 88, 436, 639
BpiI	GAAGAC	1 cut(s)	485
BpmI	CTGGAG	1 cut(s)	99
BpuMI	CCSGG	3 cut(s)	552, 624, 636
BsaJI	CCNNGG	6 cut(s)	563, 569, 579, 644, 705, 728
Bsc4I	CCNNNNNNNGG	8 cut(s)	230, 551, 563, 581, 596, 630, 659, 677
Bse118I	RCCGGY	1 cut(s)	449
BseBI	CCWGG	2 cut(s)	117, 564
BseDI	CCNNGG	6 cut(s)	563, 569, 579, 644, 705, 728
BseGI	GGATG	2 cut(s)	654, 790
BseLI	CCNNNNNNNGG	8 cut(s)	230, 551, 563, 581, 596, 630, 659, 677
BseRI	GAGGAG	1 cut(s)	537
BseX3I	CGGCCG	1 cut(s)	632
BseXI	GCAGC	1 cut(s)	40
Bsh1285I	CGRYCG	1 cut(s)	635
BshFI	GGCC	8 cut(s)	308, 533, 568, 574, 622, 634, 664, 694
BshNI	GGYRCC	1 cut(s)	236
BsiEI	CGRYCG	1 cut(s)	635
BsiHKAI	GWGCWC	2 cut(s)	276, 377
BsiHKCI	CYCGRG	1 cut(s)	727
BsiSI	CCGG	4 cut(s)	450, 552, 624, 635
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	8 cut(s)	230, 551, 563, 581, 596, 630, 659, 677
BsmFI	GGGAC	1 cut(s)	791
BsmI	GAATGC	1 cut(s)	645
BsnI	GGCC	8 cut(s)	308, 533, 568, 574, 622, 634, 664, 694
BsoBI	CYCGRG	1 cut(s)	727
Bsp1286I	GDGCHC	3 cut(s)	276, 342, 377
Bsp143I	GATC	3 cut(s)	285, 328, 743
Bsp19I	CCATGG	2 cut(s)	579, 644
BspACI	CCGC	5 cut(s)	104, 653, 671, 695, 737
BspANI	GGCC	8 cut(s)	308, 533, 568, 574, 622, 634, 664, 694
BspLI	GGNNCC	3 cut(s)	238, 339, 575
BspPI	GGATC	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	449
BssAI	RCCGGY	1 cut(s)	449
BssECI	CCNNGG	6 cut(s)	563, 569, 579, 644, 705, 728
BssMI	GATC	3 cut(s)	285, 328, 743
BssT1I	CCWWGG	2 cut(s)	579, 644
Bst2UI	CCWGG	2 cut(s)	117, 564
Bst4CI	ACNGT	3 cut(s)	241, 247, 355
BstDEI	CTNAG	2 cut(s)	267, 455
BstDSI	CCRYGG	3 cut(s)	579, 644, 705
BstF5I	GGATG	2 cut(s)	654, 790
BstKTI	GATC	3 cut(s)	288, 331, 746
BstMBI	GATC	3 cut(s)	285, 328, 743
BstMCI	CGRYCG	1 cut(s)	635
BstMWI	GCNNNNNNNGC	4 cut(s)	640, 649, 661, 670
BstNI	CCWGG	2 cut(s)	117, 564
BstSCI	CCNGG	5 cut(s)	115, 550, 562, 622, 634
BstSFI	CTRYAG	1 cut(s)	763
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	485
BstZI	CGGCCG	1 cut(s)	632
BsuRI	GGCC	8 cut(s)	308, 533, 568, 574, 622, 634, 664, 694
BtgI	CCRYGG	3 cut(s)	579, 644, 705
BtsCI	GGATG	2 cut(s)	654, 790
Cfr10I	RCCGGY	1 cut(s)	449
Cfr13I	GGNCC	6 cut(s)	119, 554, 566, 573, 621, 662
CseI	GACGC	1 cut(s)	527
Csp6I	GTAC	1 cut(s)	758
CviAII	CATG	6 cut(s)	95, 277, 389, 535, 580, 645
CviQI	GTAC	1 cut(s)	758
DdeI	CTNAG	2 cut(s)	267, 455
DpnI	GATC	3 cut(s)	287, 330, 745
DpnII	GATC	3 cut(s)	285, 328, 743
DrdI	GACNNNNNNGTC	1 cut(s)	117
DseDI	GACNNNNNNGTC	1 cut(s)	117
EaeI	YGGCCR	2 cut(s)	531, 632
EagI	CGGCCG	1 cut(s)	632
EclXI	CGGCCG	1 cut(s)	632
Eco130I	CCWWGG	2 cut(s)	579, 644
Eco24I	GRGCYC	1 cut(s)	342
Eco32I	GATATC	1 cut(s)	719
Eco47I	GGWCC	2 cut(s)	119, 554
Eco52I	CGGCCG	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	194
Eco88I	CYCGRG	1 cut(s)	727
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	115, 562
EcoRV	GATATC	1 cut(s)	719
EcoT14I	CCWWGG	2 cut(s)	579, 644
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	2 cut(s)	579, 644
FaeI	CATG	6 cut(s)	98, 280, 392, 538, 583, 648
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	6 cut(s)	94, 276, 388, 534, 579, 644
FauI	CCCGC	1 cut(s)	111
FauNDI	CATATG	1 cut(s)	676
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	4 cut(s)	29, 653, 695, 737
FokI	GGATG	2 cut(s)	661, 777
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	4 cut(s)	29, 653, 695, 737
FspBI	CTAG	1 cut(s)	799
GluI	GCNGC	4 cut(s)	29, 653, 695, 737
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	8 cut(s)	308, 533, 568, 574, 622, 634, 664, 694
HapII	CCGG	4 cut(s)	450, 552, 624, 635
HgaI	GACGC	1 cut(s)	527
Hin1II	CATG	6 cut(s)	98, 280, 392, 538, 583, 648
HinfI	GANTC	2 cut(s)	5, 263
HpaII	CCGG	4 cut(s)	450, 552, 624, 635
HphI	GGTGA	3 cut(s)	214, 295, 552
Hpy166II	GTNNAC	6 cut(s)	136, 214, 430, 461, 542, 760
Hpy188I	TCNGA	4 cut(s)	290, 333, 379, 591
Hpy188III	TCNNGA	2 cut(s)	224, 727
Hpy8I	GTNNAC	6 cut(s)	136, 214, 430, 461, 542, 760
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	3 cut(s)	241, 247, 355
HpyCH4V	TGCA	4 cut(s)	28, 44, 98, 187
HpyF10VI	GCNNNNNNNGC	4 cut(s)	640, 649, 661, 670
HpyF3I	CTNAG	2 cut(s)	267, 455
Hsp92II	CATG	6 cut(s)	98, 280, 392, 538, 583, 648
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	285, 328, 743
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	4 cut(s)	53, 88, 436, 639
MaeI	CTAG	1 cut(s)	799
MaeIII	GTNAC	4 cut(s)	241, 312, 437, 521
MalI	GATC	3 cut(s)	287, 330, 745
MboI	GATC	3 cut(s)	285, 328, 743
MboII	GAAGA	7 cut(s)	30, 187, 202, 478, 487, 490, 496
MfeI	CAATTG	1 cut(s)	657
MhlI	GDGCHC	3 cut(s)	276, 342, 377
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	8 cut(s)	63, 148, 157, 295, 366, 418, 657, 781
MluNI	TGGCCA	1 cut(s)	533
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	2 cut(s)	337, 614
Mox20I	TGGCCA	1 cut(s)	533
MroXI	GAANNNNTTC	1 cut(s)	63
MscI	TGGCCA	1 cut(s)	533
MseI	TTAA	1 cut(s)	129
MslI	CAYNNNNRTG	2 cut(s)	93, 281
Msp20I	TGGCCA	1 cut(s)	533
MspI	CCGG	4 cut(s)	450, 552, 624, 635
MspR9I	CCNGG	5 cut(s)	117, 552, 564, 624, 636
MunI	CAATTG	1 cut(s)	657
Mva1269I	GAATGC	1 cut(s)	645
MvaI	CCWGG	2 cut(s)	117, 564
MwoI	GCNNNNNNNGC	4 cut(s)	640, 649, 661, 670
NciI	CCSGG	3 cut(s)	552, 624, 636
NcoI	CCATGG	2 cut(s)	579, 644
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	3 cut(s)	285, 328, 743
NlaIII	CATG	6 cut(s)	98, 280, 392, 538, 583, 648
NlaIV	GGNNCC	3 cut(s)	238, 339, 575
NmeAIII	GCCGAG	1 cut(s)	550
PctI	GAATGC	1 cut(s)	645
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	563
PfoI	TCCNGGA	1 cut(s)	550
PkrI	GCNGC	4 cut(s)	30, 654, 696, 738
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
PpuMI	RGGWCCY	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	115, 562
PspGI	CCWGG	2 cut(s)	115, 562
PspN4I	GGNNCC	3 cut(s)	238, 339, 575
PspPI	GGNCC	6 cut(s)	119, 554, 566, 573, 621, 662
PspPPI	RGGWCCY	1 cut(s)	119
RsaI	GTAC	1 cut(s)	759
RsaNI	GTAC	1 cut(s)	758
RseI	CAYNNNNRTG	2 cut(s)	93, 281
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	4 cut(s)	29, 653, 695, 737
Sau3AI	GATC	3 cut(s)	285, 328, 743
Sau96I	GGNCC	6 cut(s)	119, 554, 566, 573, 621, 662
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	5 cut(s)	117, 552, 564, 624, 636
SduI	GDGCHC	3 cut(s)	276, 342, 377
SfaNI	GCATC	4 cut(s)	53, 88, 436, 639
SfcI	CTRYAG	1 cut(s)	763
SinI	GGWCC	2 cut(s)	119, 554
SmiMI	CAYNNNNRTG	2 cut(s)	93, 281
Sse9I	AATT	8 cut(s)	63, 148, 157, 295, 366, 418, 657, 781
SsiI	CCGC	5 cut(s)	104, 653, 671, 695, 737
SspMI	CTAG	1 cut(s)	799
StyD4I	CCNGG	5 cut(s)	115, 550, 562, 622, 634
StyI	CCWWGG	2 cut(s)	579, 644
TaaI	ACNGT	3 cut(s)	241, 247, 355
TaqI	TCGA	2 cut(s)	109, 746
TasI	AATT	8 cut(s)	63, 148, 157, 295, 366, 418, 657, 781
TauI	GCSGC	3 cut(s)	655, 697, 739
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	399
TspGWI	ACGGA	2 cut(s)	722, 729
Van91I	CCANNNNNTGG	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	119, 554
XapI	RAATTY	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.