Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007966

Physical Location & Seq

Genomic Coordinates Reverse (-)

15470744 .. 15473885

Gene Structure 3142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G31990.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGCTTCTTTAATGTTATCTCTCGGTTCCACTTCTCTGTTACCGCGCGAGATTAACAAGGATAAGCTAAAGCTTGGAACTTCTGCTTCGAACCCGTTCCTAAAAGCAAAGTCTTTTAGCAGAGTGACTATGACGGTTGCAGTGAAGCCTTCTCGTTTCGAGGGTATAACTATGGCTCCACCAGACCCTATTCTTGGAGTCAGTGAAGCATTCAAAGCTGACACTAACGGGATGAAACTCAATCTTGGTGTTGGTGCTTATCGTACTGAGGAACTCCAGCCTTATGTGCTTAATGTTGTTAAAAAGGCGGAGAATTTGATGTTGGAGAGAGGAGATAACAAAGAGTATCTTCCAATTGAGGGGTTGGCAGCATTCAACAAGGCTACTGCTGAGTTGCTATTTGGAGCTGGTCATCCTGTTATTAAGGAACAAAGAGTAGCAACAATTCAGGGTCTTTCGGGAACAGGTTCACTGCGATTAGCAGCGGCTCTTATAGAGCGTTATTTCCCTGGAGCAAAAGTTGTGATCTCATCACCAACCTGGGGTAATCACAAGAATATCTTCAATGATGCCAAAGTTCCGTGGTCCGAATACCGCTACTATGATCCAAAAACAATTGGTTTGGATTTTGAGGGAATGATAGCAGATATAAAGGAAGCTCCAGAAGGATCCTTCATCTTGCTTCACGGATGTGCTCACAACCCAACTGGAATTGACCCAACACCAGAACAGTGGGTAAAAATTGCTGATGTCATTCAGGAAAAGAACCATATCCCATTTTTCGATGTTGCATACCAGGGCTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCATCTGTGAGATTATTTGCTGAGCGGGGAATGGAGTTTTTTGTTGCTCAGTCATATAGTAAAAATTTAGGTTTGTATGCAGAAAGAATTGGGGCAATCAATGTCGTGTGCTCCTCAGCTGATGCTGCTACAAGGGTCAAGAGCCAGTTGAAAAGGATTGCTCGGCCTATGTACTCGAATCCACCAGTTCATGGGGCGAGAATCGTGGCCAATGTAGTGGGTGATGTAACTATGTTCAGTGAATGGAAAGCAGAGATGGAAATGATGGCAGGAAGAATAAAGACGGTTAGACAAGAGCTGTATGATAGCCTCGTTTCAAAAGACAAGAGCGGGAAGGACTGGTCCTTCATTCTGAAGCAAATTGGCATGTTCTCTTTCACCGGCCTAAACAAAGCTCAGAGCGATAACATGACGGACAAATGGCATGTGTATATGACTAAAGACGGGAGGATATCATTGGCCGGATTATCTCTGGCCAAATGCGAGTATCTTGCTGATGCGATCATCGACTCATACCATAACGTAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004069 GO:0006082 GO:0006103 GO:0006520 GO:0006531 GO:0006536 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009064 GO:0009066 GO:0009987 GO:0016740 GO:0016769 GO:0019752 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0051186 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00270 ko00330 ko00350 ko00360 ko00400 ko00950 ko00960 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map00250 map00270 map00330 map00350 map00360 map00400 map00950 map00960 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

453

Amino Acids

49.83

Weight (kDa)

8.18

Isoelectric Point (pI)

30.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	74 - 440	1.2e-97	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31990 AT4G31990 AT4G31990 AT4G31990
fragaria_vesca	FvH4_2g40770 FvH4_2g40770
malus_domestica	MD08G1060300.v1.1
prunus_persica	Prupe.1G390500_v2.0.a1 Prupe.1G390500_v2.0.a1 Prupe.1G390500_v2.0.a1 Prupe.1G390500_v2.0.a1 Prupe.1G390500_v2.0.a1 Prupe.1G390500_v2.0.a1
pyrus_communis	pycom08g05020
rosa_chinensis	RchiOBHm_Chr6g0299821
rosa_laevigata	RLG00000011386
rosa_multiflora	Rmu_ssc0000158.1_g000005
rosa_roxburghii	Rroxscaffold_7G00168350
rosa_rugosa	Rorug06G0292500 Rorug06G0292500
rosa_samantha	Rh6BG411900 Rh6CG418000 Rh6DG404800
rosa_wichuraiana	Rw6G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1022
AccBSI	CCGCTC	2 cut(s)	856, 1161
AccII	CGCG	2 cut(s)	46, 48
AciI	CCGC	6 cut(s)	44, 308, 485, 595, 856, 1161
AclWI	GGATC	3 cut(s)	599, 663, 676
AcoI	YGGCCR	3 cut(s)	1038, 1290, 1305
AcsI	RAATTY	2 cut(s)	313, 895
AcuI	CTGAAG	1 cut(s)	1205
AfaI	GTAC	2 cut(s)	265, 1004
AfiI	CCNNNNNNNGG	4 cut(s)	194, 359, 542, 1022
AgsI	TTSAA	5 cut(s)	214, 376, 565, 982, 1149
AjnI	CCWGG	3 cut(s)	508, 539, 795
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AleI	CACNNNNGTG	1 cut(s)	690
AluBI	AGCT	9 cut(s)	67, 73, 218, 407, 659, 950, 1129, 1226, 1359
AluI	AGCT	9 cut(s)	67, 73, 218, 407, 659, 950, 1129, 1226, 1359
Alw21I	GWGCWC	2 cut(s)	697, 944
AlwI	GGATC	3 cut(s)	599, 663, 676
AlwNI	CAGNNNCTG	1 cut(s)	836
AoxI	GGCC	5 cut(s)	995, 1038, 1213, 1290, 1305
ApeKI	GCWGC	4 cut(s)	368, 482, 830, 956
ApoI	RAATTY	2 cut(s)	313, 895
Asp700I	GAANNNNTTC	3 cut(s)	95, 466, 560
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	2 cut(s)	585, 1173
AsuHPI	GGTGA	3 cut(s)	525, 1064, 1201
AsuII	TTCGAA	1 cut(s)	89
AvaII	GGWCC	2 cut(s)	585, 1173
BalI	TGGCCA	2 cut(s)	1040, 1307
BamHI	GGATCC	1 cut(s)	668
Bbv12I	GWGCWC	2 cut(s)	697, 944
BbvCI	CCTCAGC	1 cut(s)	946
BbvI	GCAGC	4 cut(s)	380, 494, 842, 943
BccI	CCATC	2 cut(s)	1081, 1090
BcgI	CGANNNNNNTGC	2 cut(s)	1304, 1338
BciT130I	CCWGG	3 cut(s)	510, 541, 797
BfaI	CTAG	1 cut(s)	807
BisI	GCNGC	5 cut(s)	369, 483, 486, 831, 957
BlpI	GCTNAGC	1 cut(s)	852
BlsI	GCNGC	5 cut(s)	370, 484, 487, 832, 958
Bme1390I	CCNGG	3 cut(s)	510, 541, 797
Bme18I	GGWCC	2 cut(s)	585, 1173
BmgT120I	GGNCC	2 cut(s)	585, 1173
BmiI	GGNNCC	3 cut(s)	28, 177, 670
BmrFI	CCNGG	3 cut(s)	510, 541, 797
BmsI	GCATC	5 cut(s)	559, 817, 842, 943, 1318
BpmI	CTGGAG	3 cut(s)	260, 531, 645
Bpu10I	CCTNAGC	1 cut(s)	946
Bpu1102I	GCTNAGC	1 cut(s)	852
Bpu14I	TTCGAA	1 cut(s)	89
BsaJI	CCNNGG	4 cut(s)	508, 540, 581, 796
BsaXI	ACNNNNNCTCC	4 cut(s)	160, 190, 504, 534
Bsc4I	CCNNNNNNNGG	4 cut(s)	194, 359, 542, 1022
Bse118I	RCCGGY	1 cut(s)	1211
Bse1I	ACTGG	4 cut(s)	712, 976, 1016, 1175
BseBI	CCWGG	3 cut(s)	510, 541, 797
BseDI	CCNNGG	4 cut(s)	508, 540, 581, 796
BseGI	GGATG	3 cut(s)	237, 412, 695
BseLI	CCNNNNNNNGG	4 cut(s)	194, 359, 542, 1022
BseMII	CTCAG	6 cut(s)	258, 381, 843, 893, 960, 1241
BseNI	ACTGG	4 cut(s)	712, 976, 1016, 1175
BseRI	GAGGAG	2 cut(s)	345, 934
BseXI	GCAGC	4 cut(s)	380, 494, 842, 943
Bsh1236I	CGCG	2 cut(s)	46, 48
BshFI	GGCC	5 cut(s)	997, 1040, 1215, 1292, 1307
BsiHKAI	GWGCWC	2 cut(s)	697, 944
BsiSI	CCGG	2 cut(s)	1212, 1293
BslI	CCNNNNNNNGG	4 cut(s)	194, 359, 542, 1022
BsmI	GAATGC	2 cut(s)	209, 371
BsnI	GGCC	5 cut(s)	997, 1040, 1215, 1292, 1307
Bsp119I	TTCGAA	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	697, 944
Bsp143I	GATC	4 cut(s)	525, 604, 668, 1332
Bsp1720I	GCTNAGC	1 cut(s)	852
BspACI	CCGC	6 cut(s)	44, 308, 485, 595, 856, 1161
BspANI	GGCC	5 cut(s)	997, 1040, 1215, 1292, 1307
BspCNI	CTCAG	6 cut(s)	259, 382, 844, 892, 959, 1240
BspFNI	CGCG	2 cut(s)	46, 48
BspLI	GGNNCC	3 cut(s)	28, 177, 670
BspPI	GGATC	3 cut(s)	599, 663, 676
BspT104I	TTCGAA	1 cut(s)	89
BsrBI	CCGCTC	2 cut(s)	856, 1161
BsrFI	RCCGGY	1 cut(s)	1211
BsrI	ACTGG	4 cut(s)	712, 976, 1016, 1175
BssAI	RCCGGY	1 cut(s)	1211
BssECI	CCNNGG	4 cut(s)	508, 540, 581, 796
BssMI	GATC	4 cut(s)	525, 604, 668, 1332
Bst2UI	CCWGG	3 cut(s)	510, 541, 797
Bst4CI	ACNGT	3 cut(s)	136, 732, 1117
BstBI	TTCGAA	1 cut(s)	89
BstDEI	CTNAG	6 cut(s)	267, 390, 852, 879, 946, 1227
BstDSI	CCRYGG	1 cut(s)	581
BstF5I	GGATG	3 cut(s)	237, 412, 695
BstFNI	CGCG	2 cut(s)	46, 48
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	4 cut(s)	528, 607, 671, 1335
BstMBI	GATC	4 cut(s)	525, 604, 668, 1332
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 286, 956
BstNI	CCWGG	3 cut(s)	510, 541, 797
BstNSI	RCATGY	2 cut(s)	1201, 1259
BstSCI	CCNGG	3 cut(s)	508, 539, 795
BstUI	CGCG	2 cut(s)	46, 48
BstV1I	GCAGC	4 cut(s)	380, 494, 842, 943
BstX2I	RGATCY	1 cut(s)	668
BstXI	CCANNNNNNTGG	2 cut(s)	732, 1048
BstYI	RGATCY	1 cut(s)	668
BsuRI	GGCC	5 cut(s)	997, 1040, 1215, 1292, 1307
BtgI	CCRYGG	1 cut(s)	581
BtsCI	GGATG	3 cut(s)	237, 412, 695
BtsI	GCAGTG	2 cut(s)	147, 470
BtsIMutI	CAGTG	5 cut(s)	147, 208, 470, 737, 1075
CaiI	CAGNNNCTG	1 cut(s)	836
CfoI	GCGC	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	1211
Cfr13I	GGNCC	2 cut(s)	585, 1173
Csp6I	GTAC	2 cut(s)	264, 1003
CviAII	CATG	4 cut(s)	1022, 1198, 1240, 1256
CviQI	GTAC	2 cut(s)	264, 1003
DdeI	CTNAG	6 cut(s)	267, 390, 852, 879, 946, 1227
DpnI	GATC	4 cut(s)	527, 606, 670, 1334
DpnII	GATC	4 cut(s)	525, 604, 668, 1332
EaeI	YGGCCR	3 cut(s)	1038, 1290, 1305
EciI	GGCGGA	1 cut(s)	323
Eco32I	GATATC	1 cut(s)	1284
Eco47I	GGWCC	2 cut(s)	585, 1173
Eco57I	CTGAAG	1 cut(s)	1205
EcoRII	CCWGG	3 cut(s)	508, 539, 795
EcoRV	GATATC	1 cut(s)	1284
FaeI	CATG	4 cut(s)	1025, 1201, 1243, 1259
FalI	AAGNNNNNCTT	4 cut(s)	333, 365, 545, 577
FatI	CATG	4 cut(s)	1021, 1197, 1239, 1255
FauI	CCCGC	2 cut(s)	849, 1154
Fnu4HI	GCNGC	5 cut(s)	369, 483, 486, 831, 957
FokI	GGATG	3 cut(s)	244, 399, 702
Fsp4HI	GCNGC	5 cut(s)	369, 483, 486, 831, 957
FspBI	CTAG	1 cut(s)	807
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	5 cut(s)	369, 483, 486, 831, 957
GsuI	CTGGAG	3 cut(s)	260, 531, 645
HaeIII	GGCC	5 cut(s)	997, 1040, 1215, 1292, 1307
HapII	CCGG	2 cut(s)	1212, 1293
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	4 cut(s)	1025, 1201, 1243, 1259
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	4 cut(s)	198, 1009, 1032, 1340
HpaII	CCGG	2 cut(s)	1212, 1293
HphI	GGTGA	3 cut(s)	525, 1064, 1201
Hpy166II	GTNNAC	1 cut(s)	470
Hpy188I	TCNGA	3 cut(s)	589, 1185, 1230
Hpy188III	TCNNGA	4 cut(s)	459, 662, 758, 970
Hpy8I	GTNNAC	1 cut(s)	470
HpyAV	CCTTC	5 cut(s)	159, 659, 682, 1159, 1186
HpyCH4III	ACNGT	3 cut(s)	136, 732, 1117
HpyCH4IV	ACGT	1 cut(s)	1353
HpyCH4V	TGCA	4 cut(s)	140, 791, 830, 911
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 286, 956
HpyF3I	CTNAG	6 cut(s)	267, 390, 852, 879, 946, 1227
HpySE526I	ACGT	1 cut(s)	1353
Hsp92II	CATG	4 cut(s)	1025, 1201, 1243, 1259
HspAI	GCGC	1 cut(s)	46
Kzo9I	GATC	4 cut(s)	525, 604, 668, 1332
LmnI	GCTCC	5 cut(s)	181, 404, 512, 664, 947
Lsp1109I	GCAGC	4 cut(s)	380, 494, 842, 943
LweI	GCATC	5 cut(s)	559, 817, 842, 943, 1318
MaeI	CTAG	1 cut(s)	807
MaeII	ACGT	1 cut(s)	1353
MaeIII	GTNAC	3 cut(s)	39, 124, 1057
MalI	GATC	4 cut(s)	527, 606, 670, 1334
MbiI	CCGCTC	2 cut(s)	856, 1161
MboI	GATC	4 cut(s)	525, 604, 668, 1332
MboII	GAAGA	4 cut(s)	341, 553, 836, 1116
MfeI	CAATTG	2 cut(s)	354, 615
MflI	RGATCY	1 cut(s)	668
MhlI	GDGCHC	2 cut(s)	697, 944
MlsI	TGGCCA	2 cut(s)	1040, 1307
MluCI	AATT	9 cut(s)	313, 354, 444, 615, 711, 741, 895, 918, 1191
MluNI	TGGCCA	2 cut(s)	1040, 1307
MlyI	GAGTC	2 cut(s)	207, 1334
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	8 cut(s)	154, 262, 323, 352, 625, 955, 1151, 1272
Mox20I	TGGCCA	2 cut(s)	1040, 1307
MroXI	GAANNNNTTC	3 cut(s)	95, 466, 560
MscI	TGGCCA	2 cut(s)	1040, 1307
MseI	TTAA	5 cut(s)	11, 54, 291, 300, 423
MslI	CAYNNNNRTG	1 cut(s)	690
Msp20I	TGGCCA	2 cut(s)	1040, 1307
MspA1I	CMGCKG	2 cut(s)	485, 950
MspI	CCGG	2 cut(s)	1212, 1293
MspR9I	CCNGG	3 cut(s)	510, 541, 797
MunI	CAATTG	2 cut(s)	354, 615
Mva1269I	GAATGC	2 cut(s)	209, 371
MvaI	CCWGG	3 cut(s)	510, 541, 797
MvnI	CGCG	2 cut(s)	46, 48
MwoI	GCNNNNNNNGC	3 cut(s)	215, 286, 956
NdeII	GATC	4 cut(s)	525, 604, 668, 1332
NlaIII	CATG	4 cut(s)	1025, 1201, 1243, 1259
NlaIV	GGNNCC	3 cut(s)	28, 177, 670
NmeAIII	GCCGAG	1 cut(s)	973
NmuCI	GTSAC	1 cut(s)	124
NspI	RCATGY	2 cut(s)	1201, 1259
NspV	TTCGAA	1 cut(s)	89
OliI	CACNNNNGTG	1 cut(s)	690
PctI	GAATGC	2 cut(s)	209, 371
PdmI	GAANNNNTTC	3 cut(s)	95, 466, 560
PfeI	GAWTC	2 cut(s)	1009, 1032
PflMI	CCANNNNNTGG	1 cut(s)	1022
PkrI	GCNGC	5 cut(s)	370, 484, 487, 832, 958
PleI	GAGTC	2 cut(s)	206, 1334
PpsI	GAGTC	2 cut(s)	206, 1334
Psp6I	CCWGG	3 cut(s)	508, 539, 795
PspGI	CCWGG	3 cut(s)	508, 539, 795
PspN4I	GGNNCC	3 cut(s)	28, 177, 670
PspPI	GGNCC	2 cut(s)	585, 1173
PstNI	CAGNNNCTG	1 cut(s)	836
PsuI	RGATCY	1 cut(s)	668
PvuII	CAGCTG	1 cut(s)	950
RsaI	GTAC	2 cut(s)	265, 1004
RsaNI	GTAC	2 cut(s)	264, 1003
RseI	CAYNNNNRTG	1 cut(s)	690
SaqAI	TTAA	5 cut(s)	11, 54, 291, 300, 423
SatI	GCNGC	5 cut(s)	369, 483, 486, 831, 957
Sau3AI	GATC	4 cut(s)	525, 604, 668, 1332
Sau96I	GGNCC	2 cut(s)	585, 1173
SchI	GAGTC	2 cut(s)	207, 1334
ScrFI	CCNGG	3 cut(s)	510, 541, 797
SduI	GDGCHC	2 cut(s)	697, 944
SfaNI	GCATC	5 cut(s)	559, 817, 842, 943, 1318
SfuI	TTCGAA	1 cut(s)	89
SinI	GGWCC	2 cut(s)	585, 1173
SmiMI	CAYNNNNRTG	1 cut(s)	690
Sse9I	AATT	9 cut(s)	313, 354, 444, 615, 711, 741, 895, 918, 1191
SsiI	CCGC	6 cut(s)	44, 308, 485, 595, 856, 1161
SspMI	CTAG	1 cut(s)	807
StyD4I	CCNGG	3 cut(s)	508, 539, 795
TaaI	ACNGT	3 cut(s)	136, 732, 1117
TaiI	ACGT	1 cut(s)	1356
TaqI	TCGA	5 cut(s)	89, 159, 783, 1007, 1338
TasI	AATT	9 cut(s)	313, 354, 444, 615, 711, 741, 895, 918, 1191
TatI	WGTACW	1 cut(s)	1002
TauI	GCSGC	1 cut(s)	488
TfiI	GAWTC	2 cut(s)	1009, 1032
Tru1I	TTAA	5 cut(s)	11, 54, 291, 300, 423
Tru9I	TTAA	5 cut(s)	11, 54, 291, 300, 423
TscAI	CASTG	5 cut(s)	147, 208, 477, 737, 1075
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	4 cut(s)	368, 482, 830, 956
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	5 cut(s)	248, 664, 837, 1010, 1168
TspGWI	ACGGA	3 cut(s)	570, 702, 1259
TspRI	CASTG	5 cut(s)	147, 208, 477, 737, 1075
Van91I	CCANNNNNTGG	1 cut(s)	1022
VpaK11BI	GGWCC	2 cut(s)	585, 1173
XapI	RAATTY	2 cut(s)	313, 895
XceI	RCATGY	2 cut(s)	1201, 1259
XmnI	GAANNNNTTC	3 cut(s)	95, 466, 560
XspI	CTAG	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.