FvH4_2g40770

Aspartate aminotransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
28987391 .. 28991004
3614 bp
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UTR
Exon/CDS
Intron
FvH4_2g40770.t1

Sequence Viewer

Length: 1362 bp
ATGGCTTCAACCATGCTCTCCTTGGCATCTTCCCTATCATTCCATGACACTCACAAGGGGAAGATCAAGCTTGGTAGTTTGGAGAGAAGCAATCTATTTCTAAACACCCAGTCAGCTGGTCGGGTTTCTATGGTTGCTGCTGTCAAGACTTCTCGATTCGACGGTGTAACCATGGCCCCACCTGATCCTATTCTTGGAGTTTCTGAAGCATTCAAAGCTAGCACCAATCTGATGAAGCTCAACCTTGGAGTTGGGGCATACCGCACCGAAGAACTCCAGCCATATGTCCTTAATGTTGTCAAGAAGGCAGAGAATCTTATGCTTGAAAGGGGGGAAAACAAAGAGTACCTCCCTATTGAAGGTTTGGCAGCATTTAACAAAGCAACTGCAGAGTTATTATTTGGAGCAGACAACCCAGTAATAAAGGAGCAAAAGGTCGCAACTGTTCAAGGTCTATCAGGGACTGGTTCTCTTCGTCTTGCTGCGGCTTTTATTGAACGATATTTTCCTGGGGCCAAAGCTCTAATATCATCTCCGACCTGGGGTAATCACAAGAATATTTTTAATGATGCTGGAGTTCCGTGGTCTGAGTACCGATATTATGATCCAAAAACAGTTGGTTTGGACTTTGAGGGGATGATAGCAGACATAAAGGCAGCACCTGAAGGATCTTTTATATTGCTTCACGGGTGTGCTCACAACCCTACTGGCATAGATCCCACTCCTGAACAGTGGGAAAAAATTGCTGATGTCATTCAAGAAAAAAACCATATTCCCTTTTTTGATGTTGCATACCAGGGGTTTGCTAGTGGAAGCTTGGATGCTGATGCTGCATCTGTCAGATTGTTTGTCGCGCGTGGTATGGAGCTCCTGGTTGCTCAGTCATACAGTAAAAACCTTGGTCTCTATGCTGAAAGAATTGGAGCAATTAATGTTGTCTTAACCTCATCTGATACAGCAGCAAGGGTAAAGAGCCAGCTGAAGAGGCTTGCTCGACCTATGTACTCAAATCCTCCTATTCATGGGGCTAAGATTGTGGCCAATATTGTCGGGGATCCTACACTTTTTGGTGAGTGGAAAGCAGAGATGGAAATGATGGCTGGAAGAATAAAGAATGTGAGACAGAAACTATACGATAGCCTGTGCGCAAAAGATAAGAGTGGAAAGGATTGGTCATTCATACTTAAGCAGATTGGCATGTTTTCATTCACAGGCTTGAACACTACTCAGACCGAGAATATGACGAAGAAGTGGCATGTATTCATGACGAAGGATGGAAGAATATCCCTGGCTGGATTGAATTTGGCGAAATGTGAATACCTTTCAGATGCCATCATCGATTCATACCACAATGTTAGTTGA

Protein Analysis

454

Amino Acids

49.61

Weight (kDa)

8.67

Isoelectric Point (pI)

29.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 79 - 445 1.3e-95 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1147
AccII CGCG 2 cut(s) 854, 856
AciI CCGC 2 cut(s) 262, 485
AclWI GGATC 6 cut(s) 179, 599, 676, 710, 1049, 1062
AcoI YGGCCR 1 cut(s) 1038
AcsI RAATTY 1 cut(s) 1300
AcuI CTGAAG 3 cut(s) 225, 684, 1001
AfaI GTAC 3 cut(s) 347, 593, 1004
AfiI CCNNNNNNNGG 4 cut(s) 194, 359, 542, 1022
AflII CTTAAG 1 cut(s) 1184
AgsI TTSAA 9 cut(s) 9, 214, 326, 359, 449, 497, 758, 1219, 1300
AjnI CCWGG 5 cut(s) 508, 539, 795, 870, 1287
AleI CACNNNNGTG 1 cut(s) 690
AluBI AGCT 8 cut(s) 70, 116, 218, 238, 521, 816, 868, 979
AluI AGCT 8 cut(s) 70, 116, 218, 238, 521, 816, 868, 979
Alw21I GWGCWC 2 cut(s) 697, 870
Alw26I GTCTC 2 cut(s) 908, 1114
AlwI GGATC 6 cut(s) 179, 599, 676, 710, 1049, 1062
AlwNI CAGNNNCTG 2 cut(s) 464, 662
AoxI GGCC 3 cut(s) 174, 513, 1038
ApeKI GCWGC 6 cut(s) 137, 368, 482, 656, 830, 959
ApoI RAATTY 1 cut(s) 1300
AseI ATTAAT 1 cut(s) 930
AspLEI GCGC 2 cut(s) 856, 1148
AspS9I GGNCC 2 cut(s) 175, 513
AsuHPI GGTGA 1 cut(s) 1082
AsuNHI GCTAGC 1 cut(s) 218
BalI TGGCCA 1 cut(s) 1040
BamHI GGATCC 1 cut(s) 1054
BanII GRGCYC 1 cut(s) 870
Bbv12I GWGCWC 2 cut(s) 697, 870
BbvI GCAGC 6 cut(s) 124, 380, 469, 668, 817, 971
BccI CCATC 4 cut(s) 1081, 1090, 1268, 1340
BciT130I CCWGG 5 cut(s) 510, 541, 797, 872, 1289
BcoDI GTCTC 2 cut(s) 908, 1114
BfaI CTAG 2 cut(s) 219, 807
BfmI CTRYAG 1 cut(s) 387
BfrI CTTAAG 1 cut(s) 1184
BisI GCNGC 7 cut(s) 138, 369, 483, 486, 657, 831, 960
BlsI GCNGC 7 cut(s) 139, 370, 484, 487, 658, 832, 961
Bme1390I CCNGG 5 cut(s) 510, 541, 797, 872, 1289
BmgT120I GGNCC 2 cut(s) 175, 513
BmiI GGNNCC 3 cut(s) 177, 514, 1056
BmrFI CCNGG 5 cut(s) 510, 541, 797, 872, 1289
BmrI ACTGGG 2 cut(s) 103, 410
BmsI GCATC 6 cut(s) 35, 559, 811, 817, 842, 1318
BmtI GCTAGC 1 cut(s) 222
BmuI ACTGGG 2 cut(s) 103, 410
BplI GAGNNNNNCTC 2 cut(s) 976, 1008
BpmI CTGGAG 2 cut(s) 260, 594
Bsa29I ATCGAT 1 cut(s) 1338
BsaI GGTCTC 1 cut(s) 908
BsaJI CCNNGG 9 cut(s) 21, 171, 244, 509, 540, 581, 796, 898, 1287
Bsc4I CCNNNNNNNGG 4 cut(s) 194, 359, 542, 1022
Bse1I ACTGG 4 cut(s) 109, 416, 469, 712
BseBI CCWGG 5 cut(s) 510, 541, 797, 872, 1289
BseCI ATCGAT 1 cut(s) 1338
BseDI CCNNGG 9 cut(s) 21, 171, 244, 509, 540, 581, 796, 898, 1287
BseGI GGATG 3 cut(s) 642, 826, 1279
BseLI CCNNNNNNNGG 4 cut(s) 194, 359, 542, 1022
BseMII CTCAG 3 cut(s) 579, 893, 1241
BseNI ACTGG 4 cut(s) 109, 416, 469, 712
BseXI GCAGC 6 cut(s) 124, 380, 469, 668, 817, 971
Bsh1236I CGCG 2 cut(s) 854, 856
BshFI GGCC 3 cut(s) 176, 515, 1040
BshVI ATCGAT 1 cut(s) 1338
BsiHKAI GWGCWC 2 cut(s) 697, 870
BslFI GGGAC 1 cut(s) 475
BslI CCNNNNNNNGG 4 cut(s) 194, 359, 542, 1022
BsmAI GTCTC 2 cut(s) 908, 1114
BsmFI GGGAC 1 cut(s) 475
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 3 cut(s) 176, 515, 1040
Bso31I GGTCTC 1 cut(s) 908
Bsp1286I GDGCHC 2 cut(s) 697, 870
Bsp143I GATC 6 cut(s) 63, 184, 604, 668, 715, 1054
Bsp19I CCATGG 1 cut(s) 171
BspACI CCGC 2 cut(s) 262, 485
BspANI GGCC 3 cut(s) 176, 515, 1040
BspCNI CTCAG 3 cut(s) 580, 892, 1240
BspDI ATCGAT 1 cut(s) 1338
BspFNI CGCG 2 cut(s) 854, 856
BspHI TCATGA 1 cut(s) 1263
BspLI GGNNCC 3 cut(s) 177, 514, 1056
BspMAI CTGCAG 1 cut(s) 391
BspOI GCTAGC 1 cut(s) 222
BspPI GGATC 6 cut(s) 179, 599, 676, 710, 1049, 1062
BspTI CTTAAG 1 cut(s) 1184
BspTNI GGTCTC 1 cut(s) 908
BsrI ACTGG 4 cut(s) 109, 416, 469, 712
BssECI CCNNGG 9 cut(s) 21, 171, 244, 509, 540, 581, 796, 898, 1287
BssMI GATC 6 cut(s) 63, 184, 604, 668, 715, 1054
BssT1I CCWWGG 4 cut(s) 21, 171, 244, 898
Bst2UI CCWGG 5 cut(s) 510, 541, 797, 872, 1289
Bst4CI ACNGT 5 cut(s) 164, 445, 616, 732, 890
Bst6I CTCTTC 2 cut(s) 477, 977
BstAFI CTTAAG 1 cut(s) 1184
BstC8I GCNNGC 3 cut(s) 220, 977, 990
BstDEI CTNAG 4 cut(s) 588, 879, 1029, 1227
BstDSI CCRYGG 2 cut(s) 171, 581
BstENI CCTNNNNNAGG 1 cut(s) 357
BstF5I GGATG 3 cut(s) 642, 826, 1279
BstFNI CGCG 2 cut(s) 854, 856
BstHHI GCGC 2 cut(s) 856, 1148
BstKTI GATC 6 cut(s) 66, 187, 607, 671, 718, 1057
BstMAI GTCTC 2 cut(s) 908, 1114
BstMBI GATC 6 cut(s) 63, 184, 604, 668, 715, 1054
BstMWI GCNNNNNNNGC 3 cut(s) 215, 830, 985
BstNI CCWGG 5 cut(s) 510, 541, 797, 872, 1289
BstNSI RCATGY 2 cut(s) 1201, 1259
BstSCI CCNGG 5 cut(s) 508, 539, 795, 870, 1287
BstSFI CTRYAG 1 cut(s) 387
BstUI CGCG 2 cut(s) 854, 856
BstV1I GCAGC 6 cut(s) 124, 380, 469, 668, 817, 971
BstX2I RGATCY 3 cut(s) 668, 715, 1054
BstXI CCANNNNNNTGG 1 cut(s) 116
BstYI RGATCY 3 cut(s) 668, 715, 1054
Bsu15I ATCGAT 1 cut(s) 1338
BsuRI GGCC 3 cut(s) 176, 515, 1040
BsuTUI ATCGAT 1 cut(s) 1338
BtgI CCRYGG 2 cut(s) 171, 581
BtsCI GGATG 3 cut(s) 642, 826, 1279
BtsIMutI CAGTG 1 cut(s) 737
Cac8I GCNNGC 3 cut(s) 220, 977, 990
CaiI CAGNNNCTG 2 cut(s) 464, 662
CciI TCATGA 1 cut(s) 1263
CfoI GCGC 2 cut(s) 856, 1148
Cfr13I GGNCC 2 cut(s) 175, 513
ClaI ATCGAT 1 cut(s) 1338
Csp6I GTAC 3 cut(s) 346, 592, 1003
CviAII CATG 7 cut(s) 13, 44, 172, 1022, 1198, 1256, 1264
CviQI GTAC 3 cut(s) 346, 592, 1003
DdeI CTNAG 4 cut(s) 588, 879, 1029, 1227
DpnI GATC 6 cut(s) 65, 186, 606, 670, 717, 1056
DpnII GATC 6 cut(s) 63, 184, 604, 668, 715, 1054
EaeI YGGCCR 1 cut(s) 1038
Eam1104I CTCTTC 2 cut(s) 477, 977
EarI CTCTTC 2 cut(s) 477, 977
Ecl136II GAGCTC 1 cut(s) 868
Eco130I CCWWGG 4 cut(s) 21, 171, 244, 898
Eco24I GRGCYC 1 cut(s) 870
Eco31I GGTCTC 1 cut(s) 908
Eco53kI GAGCTC 1 cut(s) 868
Eco57I CTGAAG 3 cut(s) 225, 684, 1001
EcoICRI GAGCTC 1 cut(s) 868
EcoNI CCTNNNNNAGG 1 cut(s) 357
EcoRII CCWGG 5 cut(s) 508, 539, 795, 870, 1287
EcoT14I CCWWGG 4 cut(s) 21, 171, 244, 898
EcoT38I GRGCYC 1 cut(s) 870
ErhI CCWWGG 4 cut(s) 21, 171, 244, 898
FaeI CATG 7 cut(s) 16, 47, 175, 1025, 1201, 1259, 1267
FaqI GGGAC 1 cut(s) 475
FatI CATG 7 cut(s) 12, 43, 171, 1021, 1197, 1255, 1263
FauNDI CATATG 1 cut(s) 283
Fnu4HI GCNGC 7 cut(s) 138, 369, 483, 486, 657, 831, 960
FokI GGATG 3 cut(s) 649, 833, 1286
FriOI GRGCYC 1 cut(s) 870
Fsp4HI GCNGC 7 cut(s) 138, 369, 483, 486, 657, 831, 960
FspBI CTAG 2 cut(s) 219, 807
FspI TGCGCA 1 cut(s) 1147
GlaI GCGC 2 cut(s) 855, 1147
GluI GCNGC 7 cut(s) 138, 369, 483, 486, 657, 831, 960
GsuI CTGGAG 2 cut(s) 260, 594
HaeIII GGCC 3 cut(s) 176, 515, 1040
HhaI GCGC 2 cut(s) 856, 1148
Hin1II CATG 7 cut(s) 16, 47, 175, 1025, 1201, 1259, 1267
Hin6I GCGC 2 cut(s) 854, 1146
HinP1I GCGC 2 cut(s) 854, 1146
HindIII AAGCTT 2 cut(s) 68, 814
HinfI GANTC 3 cut(s) 156, 313, 1340
HphI GGTGA 1 cut(s) 1082
Hpy188I TCNGA 8 cut(s) 205, 231, 537, 589, 842, 952, 1230, 1327
Hpy188III TCNNGA 6 cut(s) 145, 153, 301, 725, 758, 1264
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 4 cut(s) 298, 353, 659, 1264
HpyCH4III ACNGT 5 cut(s) 164, 445, 616, 732, 890
HpyCH4V TGCA 3 cut(s) 389, 791, 833
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 830, 985
HpyF3I CTNAG 4 cut(s) 588, 879, 1029, 1227
Hsp92II CATG 7 cut(s) 16, 47, 175, 1025, 1201, 1259, 1267
HspAI GCGC 2 cut(s) 854, 1146
Kzo9I GATC 6 cut(s) 63, 184, 604, 668, 715, 1054
LmnI GCTCC 5 cut(s) 404, 427, 865, 873, 923
Lsp1109I GCAGC 6 cut(s) 124, 380, 469, 668, 817, 971
LweI GCATC 6 cut(s) 35, 559, 811, 817, 842, 1318
MaeI CTAG 2 cut(s) 219, 807
MaeIII GTNAC 1 cut(s) 166
MalI GATC 6 cut(s) 65, 186, 606, 670, 717, 1056
MboI GATC 6 cut(s) 63, 184, 604, 668, 715, 1054
MboII GAAGA 8 cut(s) 21, 73, 281, 464, 994, 1116, 1258, 1290
MflI RGATCY 3 cut(s) 668, 715, 1054
MhlI GDGCHC 2 cut(s) 697, 870
MlsI TGGCCA 1 cut(s) 1040
MluCI AATT 4 cut(s) 741, 918, 927, 1300
MluNI TGGCCA 1 cut(s) 1040
MmeI TCCRAC 1 cut(s) 560
MnlI CCTC 5 cut(s) 359, 625, 955, 978, 1023
Mox20I TGGCCA 1 cut(s) 1040
MscI TGGCCA 1 cut(s) 1040
MseI TTAA 6 cut(s) 291, 375, 564, 930, 941, 1185
MslI CAYNNNNRTG 1 cut(s) 690
Msp20I TGGCCA 1 cut(s) 1040
MspA1I CMGCKG 2 cut(s) 116, 979
MspCI CTTAAG 1 cut(s) 1184
MspR9I CCNGG 5 cut(s) 510, 541, 797, 872, 1289
Mva1269I GAATGC 1 cut(s) 209
MvaI CCWGG 5 cut(s) 510, 541, 797, 872, 1289
MvnI CGCG 2 cut(s) 854, 856
MwoI GCNNNNNNNGC 3 cut(s) 215, 830, 985
NcoI CCATGG 1 cut(s) 171
NdeI CATATG 1 cut(s) 283
NdeII GATC 6 cut(s) 63, 184, 604, 668, 715, 1054
NheI GCTAGC 1 cut(s) 218
NlaIII CATG 7 cut(s) 16, 47, 175, 1025, 1201, 1259, 1267
NlaIV GGNNCC 3 cut(s) 177, 514, 1056
NsbI TGCGCA 1 cut(s) 1147
NspI RCATGY 2 cut(s) 1201, 1259
OliI CACNNNNGTG 1 cut(s) 690
PagI TCATGA 1 cut(s) 1263
PctI GAATGC 1 cut(s) 209
PfeI GAWTC 3 cut(s) 156, 313, 1340
PkrI GCNGC 7 cut(s) 139, 370, 484, 487, 658, 832, 961
PshBI ATTAAT 1 cut(s) 930
Psp124BI GAGCTC 1 cut(s) 870
Psp6I CCWGG 5 cut(s) 508, 539, 795, 870, 1287
PspGI CCWGG 5 cut(s) 508, 539, 795, 870, 1287
PspN4I GGNNCC 3 cut(s) 177, 514, 1056
PspPI GGNCC 2 cut(s) 175, 513
PstI CTGCAG 1 cut(s) 391
PstNI CAGNNNCTG 2 cut(s) 464, 662
PsuI RGATCY 3 cut(s) 668, 715, 1054
PvuII CAGCTG 2 cut(s) 116, 979
RsaI GTAC 3 cut(s) 347, 593, 1004
RsaNI GTAC 3 cut(s) 346, 592, 1003
RseI CAYNNNNRTG 1 cut(s) 690
SacI GAGCTC 1 cut(s) 870
SaqAI TTAA 6 cut(s) 291, 375, 564, 930, 941, 1185
SatI GCNGC 7 cut(s) 138, 369, 483, 486, 657, 831, 960
Sau3AI GATC 6 cut(s) 63, 184, 604, 668, 715, 1054
Sau96I GGNCC 2 cut(s) 175, 513
ScrFI CCNGG 5 cut(s) 510, 541, 797, 872, 1289
SduI GDGCHC 2 cut(s) 697, 870
SfaNI GCATC 6 cut(s) 35, 559, 811, 817, 842, 1318
SfcI CTRYAG 1 cut(s) 387
SmiMI CAYNNNNRTG 1 cut(s) 690
SmlI CTYRAG 1 cut(s) 1184
SmoI CTYRAG 1 cut(s) 1184
Sse9I AATT 4 cut(s) 741, 918, 927, 1300
SsiI CCGC 2 cut(s) 262, 485
SspI AATATT 2 cut(s) 559, 1045
SspMI CTAG 2 cut(s) 219, 807
SstI GAGCTC 1 cut(s) 870
StyD4I CCNGG 5 cut(s) 508, 539, 795, 870, 1287
StyI CCWWGG 4 cut(s) 21, 171, 244, 898
TaaI ACNGT 5 cut(s) 164, 445, 616, 732, 890
TaqI TCGA 4 cut(s) 154, 159, 994, 1338
TaqII GACCGA 1 cut(s) 1247
TasI AATT 4 cut(s) 741, 918, 927, 1300
TatI WGTACW 1 cut(s) 1002
TauI GCSGC 1 cut(s) 488
TfiI GAWTC 3 cut(s) 156, 313, 1340
Tru1I TTAA 6 cut(s) 291, 375, 564, 930, 941, 1185
Tru9I TTAA 6 cut(s) 291, 375, 564, 930, 941, 1185
TscAI CASTG 1 cut(s) 737
TseI GCWGC 6 cut(s) 137, 368, 482, 656, 830, 959
TspDTI ATGAA 6 cut(s) 248, 1010, 1168, 1194, 1252, 1332
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 1 cut(s) 737
Vha464I CTTAAG 1 cut(s) 1184
VspI ATTAAT 1 cut(s) 930
XagI CCTNNNNNAGG 1 cut(s) 357
XapI RAATTY 1 cut(s) 1300
XceI RCATGY 2 cut(s) 1201, 1259
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XspI CTAG 2 cut(s) 219, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.