Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007966

Physical Location & Seq

Genomic Coordinates Forward (+)

3837474 .. 3839774

Gene Structure 2301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g05020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGCCCCGCCTGATCCAATTCTCGGAGTTTCTGAAGCATTCAAGGCCAGCACAAACGAGTCAAAGCTCAACCTTGGAGTTGGGGCATATCGAACGGAAGATCTTCAGCCATACGTGCTTGATGTTGTTAAGAAGGCAGAGAATCTTATGATTGAGAGGGGGGAAAACAAAGAGTACCTCCCAATAGAAGGTTTGGCAGCGTTCAACAAAGTGACTGCAGAGTTATTATTTGGAGCAGACAACCCAGTAATAAAGCAACAGAGACTAGCAACTGTCCAAGGTCTATCAGGAACTGGTTCTCTTCGCCTTGCTGGGGCTTTTATCAAACGATATTTTCCAGGGGCAAAAGTTTTGATATCATCTCCAACCTGGGGTAATCACAAAAACATTTTTAATGACTCTAGAGTTCCATGGTCAGAGTACCGATACTATGATCCAAAAACAGTTGGTTTGGATTTCGAGGGGATGATAGCAGACATAAAGGCAGCACCTGAAGGATCTTTTGTGTTGCTTCATGGCTGTGCTCACAACCCTACCGGCATAGATCCAACCCCTGAACAGTGGGAAAAAATTGCTGATGTCATTCAAGAAAAAAACCATATCCCCTTTTTTGACGTTGCATACCAGGGATTTGCTAGTGGAAGCTTGGATACTGATGCAGCATCTGTCAGATTGTTTGCTGCACGTGGTCTAGAGCTTCTGGTTGCTCAGTCATACAGTAAAAACCTTGGGCTCTATGCAGAAAGAATTGGAGCAATCAATGTTGTCTGCGCATCATCTGATGCAGCAACAAGGGTAAAGAGCCAATTGAAGAGGATCGCTCGACCTATGTACTCAAATCCTCCAATCCACGGTGCTAGAATTGTGGCCAATGTAGTTGGAGATCCAGCACTCTTCAACGAGTGGAAAGCAGAGATGGAGATGATGGCTGGAAGGATAAAGGGCGTAAGACAAAAACTATACGATAGCCTGACCGCAACAGATAAGAGTGGAAAGGATTGGTCATTTATACTTAAGCAGATCGGCATGTTTTCATTCACCGGCTTAAACAAGGCTCAGACCGAAAACATGACAAACAAGTGGCATGTATACATGACAAAGGATGGGAGGATTTCCCTGGCAGGTTTATCTTTGGCGAAATGTGAATACCTCTCGGATGCCATCATTGATTCGTACCACAATGTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004069 GO:0006082 GO:0006103 GO:0006520 GO:0006531 GO:0006536 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009064 GO:0009066 GO:0009987 GO:0016740 GO:0016769 GO:0019752 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0051186 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00270 ko00330 ko00350 ko00360 ko00400 ko00950 ko00960 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map00250 map00270 map00330 map00350 map00360 map00400 map00950 map00960 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

397

Amino Acids

43.55

Weight (kDa)

7.67

Isoelectric Point (pI)

32.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	21 - 388	7.3e-97	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31990 AT4G31990 AT4G31990 AT4G31990
fragaria_vesca	FvH4_2g40770 FvH4_2g40770
malus_domestica	MD08G1060300.v1.1
prunus_persica	Prupe.1G390500_v2.0.a1 Prupe.1G390500_v2.0.a1 Prupe.1G390500_v2.0.a1 Prupe.1G390500_v2.0.a1 Prupe.1G390500_v2.0.a1 Prupe.1G390500_v2.0.a1
pyrus_communis	pycom08g05020
rosa_chinensis	RchiOBHm_Chr6g0299821
rosa_laevigata	RLG00000011386
rosa_multiflora	Rmu_ssc0000158.1_g000005
rosa_roxburghii	Rroxscaffold_7G00168350
rosa_rugosa	Rorug06G0292500 Rorug06G0292500
rosa_samantha	Rh6BG411900 Rh6CG418000 Rh6DG404800
rosa_wichuraiana	Rw6G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	772
Acc36I	ACCTGC	1 cut(s)	1112
AccI	GTMKAC	1 cut(s)	1089
AciI	CCGC	2 cut(s)	8, 975
AclWI	GGATC	6 cut(s)	8, 428, 505, 539, 824, 878
AcoI	YGGCCR	1 cut(s)	867
AcuI	CTGAAG	3 cut(s)	54, 89, 513
AcvI	CACGTG	1 cut(s)	686
AfaI	GTAC	4 cut(s)	176, 422, 833, 1175
AfiI	CCNNNNNNNGG	5 cut(s)	23, 188, 313, 371, 851
AflII	CTTAAG	1 cut(s)	1013
AgsI	TTSAA	5 cut(s)	43, 205, 587, 811, 898
AjnI	CCWGG	4 cut(s)	337, 368, 624, 1116
AluBI	AGCT	3 cut(s)	67, 645, 697
AluI	AGCT	3 cut(s)	67, 645, 697
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	1 cut(s)	256
AlwI	GGATC	6 cut(s)	8, 428, 505, 539, 824, 878
AlwNI	CAGNNNCTG	3 cut(s)	293, 491, 665
AoxI	GGCC	3 cut(s)	3, 45, 867
ApeKI	GCWGC	5 cut(s)	197, 485, 659, 680, 785
Asp700I	GAANNNNTTC	2 cut(s)	102, 295
AspLEI	GCGC	1 cut(s)	773
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	1030
BalI	TGGCCA	1 cut(s)	869
BanII	GRGCYC	1 cut(s)	735
BarI	GAAGNNNNNNTAC	2 cut(s)	634, 666
BbrPI	CACGTG	1 cut(s)	686
Bbv12I	GWGCWC	1 cut(s)	526
BbvI	GCAGC	5 cut(s)	209, 497, 667, 671, 797
BccI	CCATC	4 cut(s)	910, 919, 1097, 1169
BciT130I	CCWGG	4 cut(s)	339, 370, 626, 1118
BciVI	GTATCC	1 cut(s)	643
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	5 cut(s)	266, 402, 636, 692, 858
BfmI	CTRYAG	1 cut(s)	216
BfrI	CTTAAG	1 cut(s)	1013
BfuAI	ACCTGC	1 cut(s)	1112
BfuI	GTATCC	1 cut(s)	643
BglII	AGATCT	1 cut(s)	100
BisI	GCNGC	5 cut(s)	198, 486, 660, 681, 786
BlsI	GCNGC	5 cut(s)	199, 487, 661, 682, 787
Bme1390I	CCNGG	4 cut(s)	339, 370, 626, 1118
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	4 cut(s)	339, 370, 626, 1118
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	5 cut(s)	646, 671, 772, 782, 1147
BmuI	ACTGGG	1 cut(s)	239
BplI	GAGNNNNNCTC	2 cut(s)	805, 837
BsaAI	YACGTR	2 cut(s)	115, 686
BsaJI	CCNNGG	9 cut(s)	73, 277, 338, 369, 410, 625, 727, 850, 1116
Bsc4I	CCNNNNNNNGG	5 cut(s)	23, 188, 313, 371, 851
Bse118I	RCCGGY	2 cut(s)	536, 1040
Bse1I	ACTGG	2 cut(s)	245, 298
BseBI	CCWGG	4 cut(s)	339, 370, 626, 1118
BseDI	CCNNGG	9 cut(s)	73, 277, 338, 369, 410, 625, 727, 850, 1116
BseGI	GGATG	3 cut(s)	471, 1108, 1162
BseLI	CCNNNNNNNGG	5 cut(s)	23, 188, 313, 371, 851
BseMII	CTCAG	2 cut(s)	722, 1070
BseNI	ACTGG	2 cut(s)	245, 298
BseXI	GCAGC	5 cut(s)	209, 497, 667, 671, 797
BseYI	CCCAGC	1 cut(s)	311
BsgI	GTGCAG	1 cut(s)	666
BshFI	GGCC	3 cut(s)	5, 47, 869
BsiHKAI	GWGCWC	1 cut(s)	526
BsiSI	CCGG	2 cut(s)	537, 1041
BslI	CCNNNNNNNGG	5 cut(s)	23, 188, 313, 371, 851
BsmAI	GTCTC	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	3 cut(s)	5, 47, 869
Bsp1286I	GDGCHC	2 cut(s)	526, 735
Bsp143I	GATC	8 cut(s)	13, 100, 433, 497, 544, 816, 883, 1020
Bsp19I	CCATGG	1 cut(s)	410
BspACI	CCGC	2 cut(s)	8, 975
BspANI	GGCC	3 cut(s)	5, 47, 869
BspCNI	CTCAG	2 cut(s)	721, 1069
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	220
BspMI	ACCTGC	1 cut(s)	1112
BspPI	GGATC	6 cut(s)	8, 428, 505, 539, 824, 878
BspTI	CTTAAG	1 cut(s)	1013
BsrFI	RCCGGY	2 cut(s)	536, 1040
BsrI	ACTGG	2 cut(s)	245, 298
BssAI	RCCGGY	2 cut(s)	536, 1040
BssECI	CCNNGG	9 cut(s)	73, 277, 338, 369, 410, 625, 727, 850, 1116
BssMI	GATC	8 cut(s)	13, 100, 433, 497, 544, 816, 883, 1020
BssNAI	GTATAC	1 cut(s)	1090
BssT1I	CCWWGG	4 cut(s)	73, 277, 410, 727
Bst1107I	GTATAC	1 cut(s)	1090
Bst2UI	CCWGG	4 cut(s)	339, 370, 626, 1118
Bst4CI	ACNGT	5 cut(s)	274, 445, 561, 719, 854
Bst6I	CTCTTC	3 cut(s)	306, 806, 899
BstAFI	CTTAAG	1 cut(s)	1013
BstBAI	YACGTR	2 cut(s)	115, 686
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	2 cut(s)	708, 1056
BstDSI	CCRYGG	2 cut(s)	410, 850
BstF5I	GGATG	3 cut(s)	471, 1108, 1162
BstHHI	GCGC	1 cut(s)	773
BstKTI	GATC	8 cut(s)	16, 103, 436, 500, 547, 819, 886, 1023
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	8 cut(s)	13, 100, 433, 497, 544, 816, 883, 1020
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 115
BstNI	CCWGG	4 cut(s)	339, 370, 626, 1118
BstNSI	RCATGY	2 cut(s)	1030, 1088
BstSCI	CCNGG	4 cut(s)	337, 368, 624, 1116
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	5 cut(s)	209, 497, 667, 671, 797
BstX2I	RGATCY	4 cut(s)	100, 497, 544, 883
BstYI	RGATCY	4 cut(s)	100, 497, 544, 883
BstZ17I	GTATAC	1 cut(s)	1090
BsuI	GTATCC	1 cut(s)	643
BsuRI	GGCC	3 cut(s)	5, 47, 869
BtgI	CCRYGG	2 cut(s)	410, 850
BtsCI	GGATG	3 cut(s)	471, 1108, 1162
BtsIMutI	CAGTG	1 cut(s)	566
BveI	ACCTGC	1 cut(s)	1112
Cac8I	GCNNGC	1 cut(s)	49
CaiI	CAGNNNCTG	3 cut(s)	293, 491, 665
CfoI	GCGC	1 cut(s)	773
Cfr10I	RCCGGY	2 cut(s)	536, 1040
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	4 cut(s)	175, 421, 832, 1174
CviAII	CATG	6 cut(s)	411, 515, 1027, 1069, 1085, 1093
CviQI	GTAC	4 cut(s)	175, 421, 832, 1174
DdeI	CTNAG	2 cut(s)	708, 1056
DpnI	GATC	8 cut(s)	15, 102, 435, 499, 546, 818, 885, 1022
DpnII	GATC	8 cut(s)	13, 100, 433, 497, 544, 816, 883, 1020
EaeI	YGGCCR	1 cut(s)	867
Eam1104I	CTCTTC	3 cut(s)	306, 806, 899
EarI	CTCTTC	3 cut(s)	306, 806, 899
Eco130I	CCWWGG	4 cut(s)	73, 277, 410, 727
Eco24I	GRGCYC	1 cut(s)	735
Eco32I	GATATC	1 cut(s)	357
Eco57I	CTGAAG	3 cut(s)	54, 89, 513
Eco72I	CACGTG	1 cut(s)	686
EcoRII	CCWGG	4 cut(s)	337, 368, 624, 1116
EcoRV	GATATC	1 cut(s)	357
EcoT14I	CCWWGG	4 cut(s)	73, 277, 410, 727
EcoT38I	GRGCYC	1 cut(s)	735
ErhI	CCWWGG	4 cut(s)	73, 277, 410, 727
FaeI	CATG	6 cut(s)	414, 518, 1030, 1072, 1088, 1096
FatI	CATG	6 cut(s)	410, 514, 1026, 1068, 1084, 1092
FauI	CCCGC	1 cut(s)	15
FblI	GTMKAC	1 cut(s)	1089
Fnu4HI	GCNGC	5 cut(s)	198, 486, 660, 681, 786
FokI	GGATG	3 cut(s)	478, 1115, 1169
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	5 cut(s)	198, 486, 660, 681, 786
FspBI	CTAG	5 cut(s)	266, 402, 636, 692, 858
FspI	TGCGCA	1 cut(s)	772
GlaI	GCGC	1 cut(s)	772
GluI	GCNGC	5 cut(s)	198, 486, 660, 681, 786
GsaI	CCCAGC	1 cut(s)	315
HaeIII	GGCC	3 cut(s)	5, 47, 869
HapII	CCGG	2 cut(s)	537, 1041
HhaI	GCGC	1 cut(s)	773
Hin1II	CATG	6 cut(s)	414, 518, 1030, 1072, 1088, 1096
Hin6I	GCGC	1 cut(s)	771
HinP1I	GCGC	1 cut(s)	771
HindIII	AAGCTT	1 cut(s)	643
HinfI	GANTC	4 cut(s)	59, 142, 398, 1169
HpaII	CCGG	2 cut(s)	537, 1041
HphI	GGTGA	1 cut(s)	1030
Hpy166II	GTNNAC	1 cut(s)	1090
Hpy188I	TCNGA	7 cut(s)	26, 34, 418, 671, 781, 1059, 1156
Hpy188III	TCNNGA	4 cut(s)	288, 402, 587, 692
Hpy8I	GTNNAC	1 cut(s)	1090
HpyAV	CCTTC	4 cut(s)	127, 182, 488, 927
HpyCH4III	ACNGT	5 cut(s)	274, 445, 561, 719, 854
HpyCH4IV	ACGT	3 cut(s)	114, 615, 685
HpyCH4V	TGCA	6 cut(s)	218, 620, 659, 683, 740, 785
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 115
HpyF3I	CTNAG	2 cut(s)	708, 1056
HpySE526I	ACGT	3 cut(s)	114, 615, 685
Hsp92II	CATG	6 cut(s)	414, 518, 1030, 1072, 1088, 1096
HspAI	GCGC	1 cut(s)	771
Kzo9I	GATC	8 cut(s)	13, 100, 433, 497, 544, 816, 883, 1020
LmnI	GCTCC	2 cut(s)	233, 752
Lsp1109I	GCAGC	5 cut(s)	209, 497, 667, 671, 797
LweI	GCATC	5 cut(s)	646, 671, 772, 782, 1147
MaeI	CTAG	5 cut(s)	266, 402, 636, 692, 858
MaeII	ACGT	3 cut(s)	114, 615, 685
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	8 cut(s)	15, 102, 435, 499, 546, 818, 885, 1022
MboI	GATC	8 cut(s)	13, 100, 433, 497, 544, 816, 883, 1020
MboII	GAAGA	5 cut(s)	95, 110, 293, 823, 886
MfeI	CAATTG	1 cut(s)	806
MflI	RGATCY	4 cut(s)	100, 497, 544, 883
MhlI	GDGCHC	2 cut(s)	526, 735
MlsI	TGGCCA	1 cut(s)	869
MluCI	AATT	5 cut(s)	18, 570, 747, 806, 861
MluNI	TGGCCA	1 cut(s)	869
MlyI	GAGTC	2 cut(s)	68, 392
MmeI	TCCRAC	3 cut(s)	389, 572, 859
MnlI	CCTC	7 cut(s)	150, 188, 454, 807, 852, 1101, 1160
Mox20I	TGGCCA	1 cut(s)	869
MroXI	GAANNNNTTC	2 cut(s)	102, 295
MscI	TGGCCA	1 cut(s)	869
MseI	TTAA	4 cut(s)	129, 393, 1014, 1046
MslI	CAYNNNNRTG	1 cut(s)	519
Msp20I	TGGCCA	1 cut(s)	869
MspCI	CTTAAG	1 cut(s)	1013
MspI	CCGG	2 cut(s)	537, 1041
MspR9I	CCNGG	4 cut(s)	339, 370, 626, 1118
MunI	CAATTG	1 cut(s)	806
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	4 cut(s)	339, 370, 626, 1118
MwoI	GCNNNNNNNGC	2 cut(s)	44, 115
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	8 cut(s)	13, 100, 433, 497, 544, 816, 883, 1020
NlaIII	CATG	6 cut(s)	414, 518, 1030, 1072, 1088, 1096
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	211
NsbI	TGCGCA	1 cut(s)	772
NspI	RCATGY	2 cut(s)	1030, 1088
PctI	GAATGC	1 cut(s)	38
PdmI	GAANNNNTTC	2 cut(s)	102, 295
PfeI	GAWTC	2 cut(s)	142, 1169
PkrI	GCNGC	5 cut(s)	199, 487, 661, 682, 787
PleI	GAGTC	2 cut(s)	67, 392
PmaCI	CACGTG	1 cut(s)	686
PmlI	CACGTG	1 cut(s)	686
PpsI	GAGTC	2 cut(s)	67, 392
Ppu21I	YACGTR	2 cut(s)	115, 686
Psp6I	CCWGG	4 cut(s)	337, 368, 624, 1116
PspCI	CACGTG	1 cut(s)	686
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	4 cut(s)	337, 368, 624, 1116
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	220
PstNI	CAGNNNCTG	3 cut(s)	293, 491, 665
PsuI	RGATCY	4 cut(s)	100, 497, 544, 883
RsaI	GTAC	4 cut(s)	176, 422, 833, 1175
RsaNI	GTAC	4 cut(s)	175, 421, 832, 1174
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	4 cut(s)	129, 393, 1014, 1046
SatI	GCNGC	5 cut(s)	198, 486, 660, 681, 786
Sau3AI	GATC	8 cut(s)	13, 100, 433, 497, 544, 816, 883, 1020
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	68, 392
ScrFI	CCNGG	4 cut(s)	339, 370, 626, 1118
SduI	GDGCHC	2 cut(s)	526, 735
SfaNI	GCATC	5 cut(s)	646, 671, 772, 782, 1147
SfcI	CTRYAG	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	1013
SmoI	CTYRAG	1 cut(s)	1013
Sse9I	AATT	5 cut(s)	18, 570, 747, 806, 861
SsiI	CCGC	2 cut(s)	8, 975
SspMI	CTAG	5 cut(s)	266, 402, 636, 692, 858
StyD4I	CCNGG	4 cut(s)	337, 368, 624, 1116
StyI	CCWWGG	4 cut(s)	73, 277, 410, 727
TaaI	ACNGT	5 cut(s)	274, 445, 561, 719, 854
TaiI	ACGT	3 cut(s)	117, 618, 688
TaqI	TCGA	3 cut(s)	91, 459, 823
TaqII	GACCGA	1 cut(s)	1076
TasI	AATT	5 cut(s)	18, 570, 747, 806, 861
TatI	WGTACW	1 cut(s)	831
TfiI	GAWTC	2 cut(s)	142, 1169
Tru1I	TTAA	4 cut(s)	129, 393, 1014, 1046
Tru9I	TTAA	4 cut(s)	129, 393, 1014, 1046
TscAI	CASTG	1 cut(s)	566
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	5 cut(s)	197, 485, 659, 680, 785
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	503, 1023
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	566
Vha464I	CTTAAG	1 cut(s)	1013
XbaI	TCTAGA	2 cut(s)	401, 691
XceI	RCATGY	2 cut(s)	1030, 1088
XmiI	GTMKAC	1 cut(s)	1089
XmnI	GAANNNNTTC	2 cut(s)	102, 295
XspI	CTAG	5 cut(s)	266, 402, 636, 692, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.