RLG00000011386

Aspartate aminotransferase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
9038912 .. 9042731
3820 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011386

Sequence Viewer

Length: 1449 bp
ATGAAAAACAAGTTTGTTAGCACCGCGTTGTGTTCATCGTCTTCTTTATCTTTCTCGCTCTCCCGAATTGAGATGGCTTCAACCATGCTGTCCTTGGCTTCTGTCTCTCCATCATCTTCCATATCAATCCATGACACTCACAAGAGGAAGATCAAGCTTGGTAGTTTGGAGAGAAGCAATCTATTTTTAAAGACCGAGACTGTTGGTCGGGTATCTATGGTTGCTGCTGTGAAGACTTCTCGATTCGACGGTGTGACCATGGCCCCACCTGATCCTATTCTTGGAGTTTCTGAAGCATTCAAAGCTAGCACAAATGAGAAGAAGCTCAACCTTGGAGTTGGGGCATACCGCACAGAAGAACTCCAGCCATATGTGCTTAATGTTGTTAAGAAGGCAGAGAATCTTATGCTTCAAAGGGGGGAAAACAAAGAGTACCTCCCAATTGAAGGTTTGGCAGCATTCAACAAAGCAACTGCAGAGTTACTATTTGGAGCAGATAACCCAGTAATAAAGGAGCAAAGGGTCGCAACTGTTCAAGGTCTGTCAGGAACTGGTTCTCTTCGTCTTGCTGCAGCTTTTATAGAACGATATTTTTCTGGAGCCAAAGCTTTAATATCATCCCCGACCTGGGGTAATCACAAGAATATTTTTAATGACGCTGGAGTTCCCTGGTCTGAGTACCGATACTATGATCCAAAAACAGTTGGTTTGGACTTTGAGGGGATGATAGCAGACATAAAGGCAGCACCTGAAGGATCCTTTGTGTTGCTTCATGGCTGTGCTCACAATCCTACTGGCATAGATCCAACCCCTGACCAGTGGGAAAAAATTGCTGATGTCATTCAAGAGAAAAACCATATCCCCTTTTTTGATGTTGCATACCAGGGATTTGCTAGTGGAAGCCTGGATGCTGATGCTGCATCTGTCAGATTGTTTGCCGCGCGTGGTATGGAGCTCCTGGTTGCTCAGTCGTACAGTAAAAACCTTGGTCTCTATGCTGAAAGAATTGGAGCAATTAATGTTGTCTTGACCTCATCTGATACAGCAGTAAGGGTAAAGAGTCAACTGAAGAGGCTTGCTCGACCTATGTACTCAAACCCGCCTATTCATGGGGCTAAGATCGTGGCCAATATTGTTGGGGATCCGACACTTTTCAGTGAGTGGAAAGCAGAGATGGAAATGATGGCTGGAAGAATAAAGAATGTGAGACAAAAACTATACGATAGCCTGTGCGCAAAAGATAAGAGTGGAAAGGATTGGTCATTTATACCGAAGCAGATTGGCATGTTTTCATTCACAGGCTTGAACAAAACTCAGACTGAGAATATGACAAACAAGTGGCATGTATTCATGACAAAGGATGGAAGAATATCCCTGGCTGGATTGAATTTGGCGAAATGTGAATACCTTTCAGATGCCATCATTGATTCGTACCACAATGTGAGTTGA

Protein Analysis

483

Amino Acids

52.82

Weight (kDa)

9.04

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 107 - 474 2.2e-96 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1234
AccII CGCG 3 cut(s) 26, 941, 943
AciI CCGC 4 cut(s) 24, 349, 939, 1100
AclWI GGATC 7 cut(s) 266, 686, 750, 763, 797, 1136, 1149
AcoI YGGCCR 1 cut(s) 1125
AcsI RAATTY 1 cut(s) 1387
AcuI CTGAAG 3 cut(s) 312, 771, 1088
AdeI CACNNNGTG 1 cut(s) 1441
AfaI GTAC 5 cut(s) 434, 680, 974, 1091, 1433
AfiI CCNNNNNNNGG 6 cut(s) 281, 446, 627, 628, 629, 1109
AgsI TTSAA 9 cut(s) 81, 301, 413, 446, 463, 536, 845, 1306, 1387
AhdI GACNNNNNGTC 1 cut(s) 204
AjnI CCWGG 6 cut(s) 626, 668, 882, 903, 957, 1374
AluBI AGCT 6 cut(s) 157, 305, 325, 575, 608, 955
AluI AGCT 6 cut(s) 157, 305, 325, 575, 608, 955
Alw21I GWGCWC 2 cut(s) 784, 957
Alw26I GTCTC 4 cut(s) 109, 191, 995, 1201
AlwI GGATC 7 cut(s) 266, 686, 750, 763, 797, 1136, 1149
AlwNI CAGNNNCTG 2 cut(s) 551, 749
AoxI GGCC 2 cut(s) 261, 1125
ApeKI GCWGC 6 cut(s) 224, 455, 569, 572, 743, 917
ApoI RAATTY 1 cut(s) 1387
AseI ATTAAT 1 cut(s) 1017
Asp700I GAANNNNTTC 1 cut(s) 553
AspLEI GCGC 2 cut(s) 943, 1235
AspS9I GGNCC 1 cut(s) 262
AsuNHI GCTAGC 1 cut(s) 305
BaeI ACNNNNGTAYC 2 cut(s) 1032, 1065
BalI TGGCCA 1 cut(s) 1127
BamHI GGATCC 2 cut(s) 755, 1141
BanII GRGCYC 1 cut(s) 957
BbsI GAAGAC 2 cut(s) 33, 239
Bbv12I GWGCWC 2 cut(s) 784, 957
BbvI GCAGC 6 cut(s) 211, 467, 556, 584, 755, 904
BccI CCATC 6 cut(s) 67, 118, 1168, 1177, 1355, 1427
BciT130I CCWGG 6 cut(s) 628, 670, 884, 905, 959, 1376
BcoDI GTCTC 4 cut(s) 109, 191, 995, 1201
BfaI CTAG 2 cut(s) 306, 894
BfmI CTRYAG 2 cut(s) 474, 570
BisI GCNGC 7 cut(s) 225, 456, 570, 573, 744, 918, 939
BlsI GCNGC 7 cut(s) 226, 457, 571, 574, 745, 919, 940
Bme1390I CCNGG 6 cut(s) 628, 670, 884, 905, 959, 1376
BmeRI GACNNNNNGTC 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 4 cut(s) 264, 601, 757, 1143
BmrFI CCNGG 6 cut(s) 628, 670, 884, 905, 959, 1376
BmrI ACTGGG 1 cut(s) 497
BmsI GCATC 4 cut(s) 898, 904, 929, 1405
BmtI GCTAGC 1 cut(s) 309
BmuI ACTGGG 1 cut(s) 497
BpiI GAAGAC 2 cut(s) 33, 239
BplI GAGNNNNNCTC 2 cut(s) 1063, 1095
BpmI CTGGAG 3 cut(s) 347, 618, 681
BsaI GGTCTC 1 cut(s) 995
BsaJI CCNNGG 8 cut(s) 93, 258, 331, 627, 668, 883, 985, 1374
Bsc4I CCNNNNNNNGG 6 cut(s) 281, 446, 627, 628, 629, 1109
Bse1I ACTGG 4 cut(s) 503, 556, 799, 817
BseBI CCWGG 6 cut(s) 628, 670, 884, 905, 959, 1376
BseDI CCNNGG 8 cut(s) 93, 258, 331, 627, 668, 883, 985, 1374
BseGI GGATG 4 cut(s) 617, 729, 913, 1366
BseLI CCNNNNNNNGG 6 cut(s) 281, 446, 627, 628, 629, 1109
BseMII CTCAG 4 cut(s) 666, 980, 1311, 1328
BseNI ACTGG 4 cut(s) 503, 556, 799, 817
BseXI GCAGC 6 cut(s) 211, 467, 556, 584, 755, 904
Bsh1236I CGCG 3 cut(s) 26, 941, 943
BshFI GGCC 2 cut(s) 263, 1127
BsiHKAI GWGCWC 2 cut(s) 784, 957
BslI CCNNNNNNNGG 6 cut(s) 281, 446, 627, 628, 629, 1109
BsmAI GTCTC 4 cut(s) 109, 191, 995, 1201
BsmI GAATGC 2 cut(s) 296, 458
BsnI GGCC 2 cut(s) 263, 1127
Bso31I GGTCTC 1 cut(s) 995
Bsp1286I GDGCHC 2 cut(s) 784, 957
Bsp143I GATC 7 cut(s) 150, 271, 691, 755, 802, 1119, 1141
Bsp19I CCATGG 1 cut(s) 258
BspACI CCGC 4 cut(s) 24, 349, 939, 1100
BspANI GGCC 2 cut(s) 263, 1127
BspCNI CTCAG 4 cut(s) 667, 979, 1312, 1327
BspFNI CGCG 3 cut(s) 26, 941, 943
BspHI TCATGA 1 cut(s) 1350
BspLI GGNNCC 4 cut(s) 264, 601, 757, 1143
BspMAI CTGCAG 2 cut(s) 478, 574
BspOI GCTAGC 1 cut(s) 309
BspPI GGATC 7 cut(s) 266, 686, 750, 763, 797, 1136, 1149
BspTNI GGTCTC 1 cut(s) 995
BsrI ACTGG 4 cut(s) 503, 556, 799, 817
BssECI CCNNGG 8 cut(s) 93, 258, 331, 627, 668, 883, 985, 1374
BssMI GATC 7 cut(s) 150, 271, 691, 755, 802, 1119, 1141
BssT1I CCWWGG 4 cut(s) 93, 258, 331, 985
Bst2UI CCWGG 6 cut(s) 628, 670, 884, 905, 959, 1376
Bst4CI ACNGT 5 cut(s) 202, 251, 532, 703, 977
Bst6I CTCTTC 2 cut(s) 564, 1064
BstC8I GCNNGC 2 cut(s) 307, 1077
BstDEI CTNAG 5 cut(s) 675, 966, 1116, 1314, 1320
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 4 cut(s) 617, 729, 913, 1366
BstFNI CGCG 3 cut(s) 26, 941, 943
BstHHI GCGC 2 cut(s) 943, 1235
BstKTI GATC 7 cut(s) 153, 274, 694, 758, 805, 1122, 1144
BstMAI GTCTC 4 cut(s) 109, 191, 995, 1201
BstMBI GATC 7 cut(s) 150, 271, 691, 755, 802, 1119, 1141
BstMWI GCNNNNNNNGC 3 cut(s) 302, 373, 917
BstNI CCWGG 6 cut(s) 628, 670, 884, 905, 959, 1376
BstNSI RCATGY 2 cut(s) 1288, 1346
BstSCI CCNGG 6 cut(s) 626, 668, 882, 903, 957, 1374
BstSFI CTRYAG 2 cut(s) 474, 570
BstUI CGCG 3 cut(s) 26, 941, 943
BstV1I GCAGC 6 cut(s) 211, 467, 556, 584, 755, 904
BstV2I GAAGAC 2 cut(s) 33, 239
BstX2I RGATCY 3 cut(s) 755, 802, 1141
BstYI RGATCY 3 cut(s) 755, 802, 1141
BsuRI GGCC 2 cut(s) 263, 1127
BtgI CCRYGG 1 cut(s) 258
BtsCI GGATG 4 cut(s) 617, 729, 913, 1366
BtsIMutI CAGTG 2 cut(s) 824, 1162
Cac8I GCNNGC 2 cut(s) 307, 1077
CaiI CAGNNNCTG 2 cut(s) 551, 749
CciI TCATGA 1 cut(s) 1350
CfoI GCGC 2 cut(s) 943, 1235
Cfr13I GGNCC 1 cut(s) 262
CseI GACGC 1 cut(s) 665
Csp6I GTAC 5 cut(s) 433, 679, 973, 1090, 1432
CviAII CATG 8 cut(s) 85, 131, 259, 773, 1109, 1285, 1343, 1351
CviQI GTAC 5 cut(s) 433, 679, 973, 1090, 1432
DdeI CTNAG 5 cut(s) 675, 966, 1116, 1314, 1320
DpnI GATC 7 cut(s) 152, 273, 693, 757, 804, 1121, 1143
DpnII GATC 7 cut(s) 150, 271, 691, 755, 802, 1119, 1141
DraI TTTAAA 1 cut(s) 189
DraIII CACNNNGTG 1 cut(s) 1441
DriI GACNNNNNGTC 1 cut(s) 204
EaeI YGGCCR 1 cut(s) 1125
Eam1104I CTCTTC 2 cut(s) 564, 1064
Eam1105I GACNNNNNGTC 1 cut(s) 204
EarI CTCTTC 2 cut(s) 564, 1064
Ecl136II GAGCTC 1 cut(s) 955
Eco130I CCWWGG 4 cut(s) 93, 258, 331, 985
Eco24I GRGCYC 1 cut(s) 957
Eco31I GGTCTC 1 cut(s) 995
Eco53kI GAGCTC 1 cut(s) 955
Eco57I CTGAAG 3 cut(s) 312, 771, 1088
EcoICRI GAGCTC 1 cut(s) 955
EcoRII CCWGG 6 cut(s) 626, 668, 882, 903, 957, 1374
EcoT14I CCWWGG 4 cut(s) 93, 258, 331, 985
EcoT38I GRGCYC 1 cut(s) 957
ErhI CCWWGG 4 cut(s) 93, 258, 331, 985
FaeI CATG 8 cut(s) 88, 134, 262, 776, 1112, 1288, 1346, 1354
FatI CATG 8 cut(s) 84, 130, 258, 772, 1108, 1284, 1342, 1350
FauI CCCGC 1 cut(s) 1107
FauNDI CATATG 1 cut(s) 370
Fnu4HI GCNGC 7 cut(s) 225, 456, 570, 573, 744, 918, 939
FokI GGATG 4 cut(s) 604, 736, 920, 1373
FriOI GRGCYC 1 cut(s) 957
Fsp4HI GCNGC 7 cut(s) 225, 456, 570, 573, 744, 918, 939
FspBI CTAG 2 cut(s) 306, 894
FspI TGCGCA 1 cut(s) 1234
GlaI GCGC 2 cut(s) 942, 1234
GluI GCNGC 7 cut(s) 225, 456, 570, 573, 744, 918, 939
GsuI CTGGAG 3 cut(s) 347, 618, 681
HaeIII GGCC 2 cut(s) 263, 1127
HgaI GACGC 1 cut(s) 665
HhaI GCGC 2 cut(s) 943, 1235
Hin1II CATG 8 cut(s) 88, 134, 262, 776, 1112, 1288, 1346, 1354
Hin6I GCGC 2 cut(s) 941, 1233
HinP1I GCGC 2 cut(s) 941, 1233
HincII GTYRAC 1 cut(s) 1064
HindII GTYRAC 1 cut(s) 1064
HindIII AAGCTT 2 cut(s) 155, 606
HinfI GANTC 4 cut(s) 243, 400, 1060, 1427
Hpy166II GTNNAC 1 cut(s) 1064
Hpy188I TCNGA 7 cut(s) 292, 676, 929, 1039, 1146, 1317, 1414
Hpy188III TCNNGA 7 cut(s) 63, 240, 546, 597, 845, 1027, 1351
Hpy8I GTNNAC 1 cut(s) 1064
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 3 cut(s) 385, 440, 746
HpyCH4III ACNGT 5 cut(s) 202, 251, 532, 703, 977
HpyCH4V TGCA 4 cut(s) 476, 572, 878, 920
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 373, 917
HpyF3I CTNAG 5 cut(s) 675, 966, 1116, 1314, 1320
Hsp92II CATG 8 cut(s) 88, 134, 262, 776, 1112, 1288, 1346, 1354
HspAI GCGC 2 cut(s) 941, 1233
Kzo9I GATC 7 cut(s) 150, 271, 691, 755, 802, 1119, 1141
LmnI GCTCC 6 cut(s) 491, 514, 599, 952, 960, 1010
Lsp1109I GCAGC 6 cut(s) 211, 467, 556, 584, 755, 904
LweI GCATC 4 cut(s) 898, 904, 929, 1405
MaeI CTAG 2 cut(s) 306, 894
MaeIII GTNAC 2 cut(s) 253, 480
MalI GATC 7 cut(s) 152, 273, 693, 757, 804, 1121, 1143
MboI GATC 7 cut(s) 150, 271, 691, 755, 802, 1119, 1141
MfeI CAATTG 1 cut(s) 441
MflI RGATCY 3 cut(s) 755, 802, 1141
MhlI GDGCHC 2 cut(s) 784, 957
MlsI TGGCCA 1 cut(s) 1127
MluCI AATT 6 cut(s) 66, 441, 828, 1005, 1014, 1387
MluNI TGGCCA 1 cut(s) 1127
MlyI GAGTC 1 cut(s) 1069
MmeI TCCRAC 2 cut(s) 830, 1169
MnlI CCTC 5 cut(s) 138, 446, 712, 1042, 1065
Mox20I TGGCCA 1 cut(s) 1127
MroXI GAANNNNTTC 1 cut(s) 553
MscI TGGCCA 1 cut(s) 1127
MseI TTAA 6 cut(s) 188, 378, 387, 611, 651, 1017
MslI CAYNNNNRTG 1 cut(s) 777
Msp20I TGGCCA 1 cut(s) 1127
MspR9I CCNGG 6 cut(s) 628, 670, 884, 905, 959, 1376
MunI CAATTG 1 cut(s) 441
Mva1269I GAATGC 2 cut(s) 296, 458
MvaI CCWGG 6 cut(s) 628, 670, 884, 905, 959, 1376
MvnI CGCG 3 cut(s) 26, 941, 943
MwoI GCNNNNNNNGC 3 cut(s) 302, 373, 917
NcoI CCATGG 1 cut(s) 258
NdeI CATATG 1 cut(s) 370
NdeII GATC 7 cut(s) 150, 271, 691, 755, 802, 1119, 1141
NheI GCTAGC 1 cut(s) 305
NlaIII CATG 8 cut(s) 88, 134, 262, 776, 1112, 1288, 1346, 1354
NlaIV GGNNCC 4 cut(s) 264, 601, 757, 1143
NmuCI GTSAC 1 cut(s) 253
NsbI TGCGCA 1 cut(s) 1234
NspI RCATGY 2 cut(s) 1288, 1346
PagI TCATGA 1 cut(s) 1350
PctI GAATGC 2 cut(s) 296, 458
PdmI GAANNNNTTC 1 cut(s) 553
PfeI GAWTC 3 cut(s) 243, 400, 1427
PkrI GCNGC 7 cut(s) 226, 457, 571, 574, 745, 919, 940
PleI GAGTC 1 cut(s) 1068
PpsI GAGTC 1 cut(s) 1068
PshBI ATTAAT 1 cut(s) 1017
Psp124BI GAGCTC 1 cut(s) 957
Psp6I CCWGG 6 cut(s) 626, 668, 882, 903, 957, 1374
PspGI CCWGG 6 cut(s) 626, 668, 882, 903, 957, 1374
PspN4I GGNNCC 4 cut(s) 264, 601, 757, 1143
PspPI GGNCC 1 cut(s) 262
PstI CTGCAG 2 cut(s) 478, 574
PstNI CAGNNNCTG 2 cut(s) 551, 749
PsuI RGATCY 3 cut(s) 755, 802, 1141
RsaI GTAC 5 cut(s) 434, 680, 974, 1091, 1433
RsaNI GTAC 5 cut(s) 433, 679, 973, 1090, 1432
RseI CAYNNNNRTG 1 cut(s) 777
SacI GAGCTC 1 cut(s) 957
SaqAI TTAA 6 cut(s) 188, 378, 387, 611, 651, 1017
SatI GCNGC 7 cut(s) 225, 456, 570, 573, 744, 918, 939
Sau3AI GATC 7 cut(s) 150, 271, 691, 755, 802, 1119, 1141
Sau96I GGNCC 1 cut(s) 262
SchI GAGTC 1 cut(s) 1069
ScrFI CCNGG 6 cut(s) 628, 670, 884, 905, 959, 1376
SduI GDGCHC 2 cut(s) 784, 957
SfaNI GCATC 4 cut(s) 898, 904, 929, 1405
SfcI CTRYAG 2 cut(s) 474, 570
SmiMI CAYNNNNRTG 1 cut(s) 777
Sse9I AATT 6 cut(s) 66, 441, 828, 1005, 1014, 1387
SsiI CCGC 4 cut(s) 24, 349, 939, 1100
SspI AATATT 2 cut(s) 646, 1132
SspMI CTAG 2 cut(s) 306, 894
SstI GAGCTC 1 cut(s) 957
StyD4I CCNGG 6 cut(s) 626, 668, 882, 903, 957, 1374
StyI CCWWGG 4 cut(s) 93, 258, 331, 985
TaaI ACNGT 5 cut(s) 202, 251, 532, 703, 977
TaqI TCGA 3 cut(s) 241, 246, 1081
TaqII GACCGA 1 cut(s) 209
TasI AATT 6 cut(s) 66, 441, 828, 1005, 1014, 1387
TatI WGTACW 1 cut(s) 1089
TauI GCSGC 1 cut(s) 941
TfiI GAWTC 3 cut(s) 243, 400, 1427
Tru1I TTAA 6 cut(s) 188, 378, 387, 611, 651, 1017
Tru9I TTAA 6 cut(s) 188, 378, 387, 611, 651, 1017
TscAI CASTG 2 cut(s) 824, 1162
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 6 cut(s) 224, 455, 569, 572, 743, 917
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 6 cut(s) 17, 24, 761, 1097, 1281, 1339
TspRI CASTG 2 cut(s) 824, 1162
VspI ATTAAT 1 cut(s) 1017
XapI RAATTY 1 cut(s) 1387
XceI RCATGY 2 cut(s) 1288, 1346
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 553
XspI CTAG 2 cut(s) 306, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.