Rroxscaffold_7G00168350

Aspartate aminotransferase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
9239406 .. 9243194
3789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00168350.1

Sequence Viewer

Length: 1377 bp
ATGGCTTCAACCATGCTGTCCTTGGCTTCTGTCTCTCCGTCGTCTTCCATATCAATCCATGACACTCACAAGGGGAAGATCAAGCTTGGCAGTTTGGAGAAAAGCAATCTATTTCTAAAGACCGAGTCTGTTGGTCGGGTATCTATGGTTGCTGCTGTGAAGACTTCTCGGTTCGACGGTGTGACCATGGCCCCACCTGATCCTATTCTTGGAGTTTCTGAAGCATTCAAAGCTAGCACAAATGAGAAGAAGCTCAACCTTGGAGTTGGGGCATACCGCACAGAAGAACTCCAGCCATATGTGCTTAATGTTGTTAAGAAGGCAGAGGATCTTATGCTTCAAAGGGGGGAAAACAAAGAGTACCTCCCGATTGAAGGTTTGGCAGCATTCAACAAAGCAACTGCAGAGTTATTATTTGGAGCAGACAACCCAGTAATAAAGGAGCAAAGGGTCGCAACTGTTCAAGGTCTGTCAGGAACTGGTTCTCTTCGTCTTGCTGCAGCTTTTATAGAACGATATTTTCCTGGAGCCAAAGCTTTAATATCATCTCCGACCTGGGGTAATCACAAGAATATTTTTAATGATGCTGGAGTTCCCTGGTCTGAGTACCGATACTATGATCCAAAAACAGTTGGTTTGGACTTTGAGGGGATGATAGCAGACATAAAGGCAGCACCTGAAGGATCTTTTGTGTTGCTTCATGGCTGTGCTCACAACCCTACTGGCATAGATCCAACCCCTGACCAGTGGGAAAAAATTGCTGATGTCATTCAAGAGAAAAACCATATCCCCTTTTTTGATGTTGCATACCAGGGATTTGCTAGTGGAAGCTTGGACGCTGATGCTGCATCTGTCAGATTGTTTGCTGCACGTGGTATGGAGCTCCTGGTTGCTCAGTCGTACAGTAAAAACCTTGGTCTCTATGCTGAAAGAATTGGAGCAATTAATGTTGTCTTGACCTCATCTGATACAGCAGTAAGGGTAAAGAGTCAACTGAAGAGGCTTGCTCGACCTATGTACTCAAACCCGCCTATTCACGGGGCTAAGATCGTGGCCAATATTGTTGGGGATCCGACACTTTTCAGTGAGTGGAAAGCAGAGATGGAAATGATGGCTGGAAGAATAAAGAATGTGAGACAAAAACTATACGATAGCCTGTGTGCAAAAGATAAGAGTGGAAAGGATTGGTCATTTATACTTAAGCAGATTGGCATGTTTTCATTCACAGGCTTGAACAAAACTCAGACTGAGAATATGACAAACAAGTGGCATGTATTCATGACAAAGGACGGAAGAATATCCCTGGCTGGATTGAATTTGGCGAAATGTGAATACCTTTCAGATGCCATCATTGATTCGTACCACAATGTGAGTTGA

Protein Analysis

458

Amino Acids

50.1

Weight (kDa)

8.65

Isoelectric Point (pI)

31.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 83 - 450 3.7e-96 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 277, 1028
AclWI GGATC 7 cut(s) 194, 336, 614, 691, 725, 1064, 1077
AcoI YGGCCR 1 cut(s) 1053
AcsI RAATTY 1 cut(s) 1315
AcuI CTGAAG 3 cut(s) 240, 699, 1016
AcvI CACGTG 1 cut(s) 872
AdeI CACNNNGTG 1 cut(s) 1369
AfaI GTAC 5 cut(s) 362, 608, 902, 1019, 1361
AfiI CCNNNNNNNGG 4 cut(s) 209, 374, 557, 1037
AflII CTTAAG 1 cut(s) 1199
AgsI TTSAA 9 cut(s) 9, 229, 341, 374, 391, 464, 773, 1234, 1315
AjnI CCWGG 6 cut(s) 523, 554, 596, 810, 885, 1302
AluBI AGCT 7 cut(s) 85, 233, 253, 503, 536, 831, 883
AluI AGCT 7 cut(s) 85, 233, 253, 503, 536, 831, 883
Alw21I GWGCWC 2 cut(s) 712, 885
Alw26I GTCTC 3 cut(s) 37, 923, 1129
AlwI GGATC 7 cut(s) 194, 336, 614, 691, 725, 1064, 1077
AlwNI CAGNNNCTG 2 cut(s) 479, 677
AoxI GGCC 2 cut(s) 189, 1053
ApeKI GCWGC 7 cut(s) 152, 383, 497, 500, 671, 845, 866
ApoI RAATTY 1 cut(s) 1315
AseI ATTAAT 1 cut(s) 945
Asp700I GAANNNNTTC 1 cut(s) 481
AspS9I GGNCC 1 cut(s) 190
AsuNHI GCTAGC 1 cut(s) 233
BaeI ACNNNNGTAYC 2 cut(s) 960, 993
BalI TGGCCA 1 cut(s) 1055
BamHI GGATCC 1 cut(s) 1069
BanII GRGCYC 1 cut(s) 885
BbrPI CACGTG 1 cut(s) 872
BbsI GAAGAC 2 cut(s) 36, 167
Bbv12I GWGCWC 2 cut(s) 712, 885
BbvI GCAGC 7 cut(s) 139, 395, 484, 512, 683, 832, 853
BccI CCATC 3 cut(s) 1096, 1105, 1355
BciT130I CCWGG 6 cut(s) 525, 556, 598, 812, 887, 1304
BcoDI GTCTC 3 cut(s) 37, 923, 1129
BfaI CTAG 2 cut(s) 234, 822
BfmI CTRYAG 2 cut(s) 402, 498
BfrI CTTAAG 1 cut(s) 1199
BisI GCNGC 7 cut(s) 153, 384, 498, 501, 672, 846, 867
BlsI GCNGC 7 cut(s) 154, 385, 499, 502, 673, 847, 868
Bme1390I CCNGG 6 cut(s) 525, 556, 598, 812, 887, 1304
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 3 cut(s) 192, 529, 1071
BmrFI CCNGG 6 cut(s) 525, 556, 598, 812, 887, 1304
BmrI ACTGGG 1 cut(s) 425
BmsI GCATC 4 cut(s) 574, 832, 857, 1333
BmtI GCTAGC 1 cut(s) 237
BmuI ACTGGG 1 cut(s) 425
BpiI GAAGAC 2 cut(s) 36, 167
BplI GAGNNNNNCTC 2 cut(s) 991, 1023
BpmI CTGGAG 3 cut(s) 275, 546, 609
BsaAI YACGTR 1 cut(s) 872
BsaI GGTCTC 1 cut(s) 923
BsaJI CCNNGG 8 cut(s) 21, 186, 259, 555, 596, 811, 913, 1302
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 374, 557, 1037
Bse1I ACTGG 4 cut(s) 431, 484, 727, 745
BseBI CCWGG 6 cut(s) 525, 556, 598, 812, 887, 1304
BseDI CCNNGG 8 cut(s) 21, 186, 259, 555, 596, 811, 913, 1302
BseGI GGATG 1 cut(s) 657
BseLI CCNNNNNNNGG 4 cut(s) 209, 374, 557, 1037
BseMII CTCAG 4 cut(s) 594, 908, 1239, 1256
BseNI ACTGG 4 cut(s) 431, 484, 727, 745
BseXI GCAGC 7 cut(s) 139, 395, 484, 512, 683, 832, 853
BsgI GTGCAG 1 cut(s) 852
BshFI GGCC 2 cut(s) 191, 1055
BsiHKAI GWGCWC 2 cut(s) 712, 885
BslI CCNNNNNNNGG 4 cut(s) 209, 374, 557, 1037
BsmAI GTCTC 3 cut(s) 37, 923, 1129
BsmI GAATGC 2 cut(s) 224, 386
BsnI GGCC 2 cut(s) 191, 1055
Bso31I GGTCTC 1 cut(s) 923
Bsp1286I GDGCHC 2 cut(s) 712, 885
Bsp143I GATC 8 cut(s) 78, 199, 328, 619, 683, 730, 1047, 1069
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 2 cut(s) 277, 1028
BspANI GGCC 2 cut(s) 191, 1055
BspCNI CTCAG 4 cut(s) 595, 907, 1240, 1255
BspHI TCATGA 1 cut(s) 1278
BspLI GGNNCC 3 cut(s) 192, 529, 1071
BspMAI CTGCAG 2 cut(s) 406, 502
BspOI GCTAGC 1 cut(s) 237
BspPI GGATC 7 cut(s) 194, 336, 614, 691, 725, 1064, 1077
BspTI CTTAAG 1 cut(s) 1199
BspTNI GGTCTC 1 cut(s) 923
BsrI ACTGG 4 cut(s) 431, 484, 727, 745
BssECI CCNNGG 8 cut(s) 21, 186, 259, 555, 596, 811, 913, 1302
BssMI GATC 8 cut(s) 78, 199, 328, 619, 683, 730, 1047, 1069
BssT1I CCWWGG 4 cut(s) 21, 186, 259, 913
Bst2UI CCWGG 6 cut(s) 525, 556, 598, 812, 887, 1304
Bst4CI ACNGT 4 cut(s) 179, 460, 631, 905
Bst6I CTCTTC 2 cut(s) 492, 992
BstAFI CTTAAG 1 cut(s) 1199
BstBAI YACGTR 1 cut(s) 872
BstC8I GCNNGC 2 cut(s) 235, 1005
BstDEI CTNAG 5 cut(s) 603, 894, 1044, 1242, 1248
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 657
BstKTI GATC 8 cut(s) 81, 202, 331, 622, 686, 733, 1050, 1072
BstMAI GTCTC 3 cut(s) 37, 923, 1129
BstMBI GATC 8 cut(s) 78, 199, 328, 619, 683, 730, 1047, 1069
BstMWI GCNNNNNNNGC 3 cut(s) 230, 301, 845
BstNI CCWGG 6 cut(s) 525, 556, 598, 812, 887, 1304
BstNSI RCATGY 2 cut(s) 1216, 1274
BstSCI CCNGG 6 cut(s) 523, 554, 596, 810, 885, 1302
BstSFI CTRYAG 2 cut(s) 402, 498
BstV1I GCAGC 7 cut(s) 139, 395, 484, 512, 683, 832, 853
BstV2I GAAGAC 2 cut(s) 36, 167
BstX2I RGATCY 4 cut(s) 328, 683, 730, 1069
BstYI RGATCY 4 cut(s) 328, 683, 730, 1069
BsuRI GGCC 2 cut(s) 191, 1055
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 657
BtsIMutI CAGTG 2 cut(s) 752, 1090
Cac8I GCNNGC 2 cut(s) 235, 1005
CaiI CAGNNNCTG 2 cut(s) 479, 677
CciI TCATGA 1 cut(s) 1278
Cfr13I GGNCC 1 cut(s) 190
CseI GACGC 1 cut(s) 845
Csp6I GTAC 5 cut(s) 361, 607, 901, 1018, 1360
CviAII CATG 7 cut(s) 13, 59, 187, 701, 1213, 1271, 1279
CviQI GTAC 5 cut(s) 361, 607, 901, 1018, 1360
DdeI CTNAG 5 cut(s) 603, 894, 1044, 1242, 1248
DpnI GATC 8 cut(s) 80, 201, 330, 621, 685, 732, 1049, 1071
DpnII GATC 8 cut(s) 78, 199, 328, 619, 683, 730, 1047, 1069
DraIII CACNNNGTG 1 cut(s) 1369
EaeI YGGCCR 1 cut(s) 1053
Eam1104I CTCTTC 2 cut(s) 492, 992
EarI CTCTTC 2 cut(s) 492, 992
Ecl136II GAGCTC 1 cut(s) 883
Eco130I CCWWGG 4 cut(s) 21, 186, 259, 913
Eco24I GRGCYC 1 cut(s) 885
Eco31I GGTCTC 1 cut(s) 923
Eco53kI GAGCTC 1 cut(s) 883
Eco57I CTGAAG 3 cut(s) 240, 699, 1016
Eco72I CACGTG 1 cut(s) 872
EcoICRI GAGCTC 1 cut(s) 883
EcoRII CCWGG 6 cut(s) 523, 554, 596, 810, 885, 1302
EcoT14I CCWWGG 4 cut(s) 21, 186, 259, 913
EcoT38I GRGCYC 1 cut(s) 885
ErhI CCWWGG 4 cut(s) 21, 186, 259, 913
FaeI CATG 7 cut(s) 16, 62, 190, 704, 1216, 1274, 1282
FatI CATG 7 cut(s) 12, 58, 186, 700, 1212, 1270, 1278
FauI CCCGC 1 cut(s) 1035
FauNDI CATATG 1 cut(s) 298
Fnu4HI GCNGC 7 cut(s) 153, 384, 498, 501, 672, 846, 867
FokI GGATG 1 cut(s) 664
FriOI GRGCYC 1 cut(s) 885
Fsp4HI GCNGC 7 cut(s) 153, 384, 498, 501, 672, 846, 867
FspBI CTAG 2 cut(s) 234, 822
GluI GCNGC 7 cut(s) 153, 384, 498, 501, 672, 846, 867
GsuI CTGGAG 3 cut(s) 275, 546, 609
HaeIII GGCC 2 cut(s) 191, 1055
HgaI GACGC 1 cut(s) 845
Hin1II CATG 7 cut(s) 16, 62, 190, 704, 1216, 1274, 1282
HincII GTYRAC 1 cut(s) 992
HindII GTYRAC 1 cut(s) 992
HindIII AAGCTT 3 cut(s) 83, 534, 829
HinfI GANTC 3 cut(s) 125, 988, 1355
Hpy166II GTNNAC 1 cut(s) 992
Hpy188I TCNGA 8 cut(s) 220, 552, 604, 857, 967, 1074, 1245, 1342
Hpy188III TCNNGA 5 cut(s) 367, 474, 773, 955, 1279
Hpy8I GTNNAC 1 cut(s) 992
Hpy99I CGWCG 2 cut(s) 43, 179
HpyAV CCTTC 3 cut(s) 313, 368, 674
HpyCH4III ACNGT 4 cut(s) 179, 460, 631, 905
HpyCH4IV ACGT 1 cut(s) 871
HpyCH4V TGCA 6 cut(s) 404, 500, 806, 848, 869, 1163
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 301, 845
HpyF3I CTNAG 5 cut(s) 603, 894, 1044, 1242, 1248
HpySE526I ACGT 1 cut(s) 871
Hsp92II CATG 7 cut(s) 16, 62, 190, 704, 1216, 1274, 1282
Kzo9I GATC 8 cut(s) 78, 199, 328, 619, 683, 730, 1047, 1069
LmnI GCTCC 6 cut(s) 419, 442, 527, 880, 888, 938
Lsp1109I GCAGC 7 cut(s) 139, 395, 484, 512, 683, 832, 853
LweI GCATC 4 cut(s) 574, 832, 857, 1333
MaeI CTAG 2 cut(s) 234, 822
MaeII ACGT 1 cut(s) 871
MaeIII GTNAC 1 cut(s) 181
MalI GATC 8 cut(s) 80, 201, 330, 621, 685, 732, 1049, 1071
MboI GATC 8 cut(s) 78, 199, 328, 619, 683, 730, 1047, 1069
MboII GAAGA 9 cut(s) 36, 88, 172, 259, 296, 479, 1009, 1131, 1305
MflI RGATCY 4 cut(s) 328, 683, 730, 1069
MhlI GDGCHC 2 cut(s) 712, 885
MlsI TGGCCA 1 cut(s) 1055
MluCI AATT 4 cut(s) 756, 933, 942, 1315
MluNI TGGCCA 1 cut(s) 1055
MlyI GAGTC 2 cut(s) 134, 997
MmeI TCCRAC 3 cut(s) 575, 758, 1097
MnlI CCTC 5 cut(s) 319, 374, 640, 970, 993
Mox20I TGGCCA 1 cut(s) 1055
MroXI GAANNNNTTC 1 cut(s) 481
MscI TGGCCA 1 cut(s) 1055
MseI TTAA 6 cut(s) 306, 315, 539, 579, 945, 1200
MslI CAYNNNNRTG 1 cut(s) 705
Msp20I TGGCCA 1 cut(s) 1055
MspCI CTTAAG 1 cut(s) 1199
MspR9I CCNGG 6 cut(s) 525, 556, 598, 812, 887, 1304
Mva1269I GAATGC 2 cut(s) 224, 386
MvaI CCWGG 6 cut(s) 525, 556, 598, 812, 887, 1304
MwoI GCNNNNNNNGC 3 cut(s) 230, 301, 845
NcoI CCATGG 1 cut(s) 186
NdeI CATATG 1 cut(s) 298
NdeII GATC 8 cut(s) 78, 199, 328, 619, 683, 730, 1047, 1069
NheI GCTAGC 1 cut(s) 233
NlaIII CATG 7 cut(s) 16, 62, 190, 704, 1216, 1274, 1282
NlaIV GGNNCC 3 cut(s) 192, 529, 1071
NmuCI GTSAC 1 cut(s) 181
NspI RCATGY 2 cut(s) 1216, 1274
PagI TCATGA 1 cut(s) 1278
PctI GAATGC 2 cut(s) 224, 386
PdmI GAANNNNTTC 1 cut(s) 481
PfeI GAWTC 1 cut(s) 1355
PflFI GACNNNGTC 1 cut(s) 124
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 7 cut(s) 154, 385, 499, 502, 673, 847, 868
PleI GAGTC 2 cut(s) 133, 996
PmaCI CACGTG 1 cut(s) 872
PmlI CACGTG 1 cut(s) 872
PpsI GAGTC 2 cut(s) 133, 996
Ppu21I YACGTR 1 cut(s) 872
PshBI ATTAAT 1 cut(s) 945
Psp124BI GAGCTC 1 cut(s) 885
Psp6I CCWGG 6 cut(s) 523, 554, 596, 810, 885, 1302
PspCI CACGTG 1 cut(s) 872
PspGI CCWGG 6 cut(s) 523, 554, 596, 810, 885, 1302
PspN4I GGNNCC 3 cut(s) 192, 529, 1071
PspPI GGNCC 1 cut(s) 190
PstI CTGCAG 2 cut(s) 406, 502
PstNI CAGNNNCTG 2 cut(s) 479, 677
PsuI RGATCY 4 cut(s) 328, 683, 730, 1069
PsyI GACNNNGTC 1 cut(s) 124
RsaI GTAC 5 cut(s) 362, 608, 902, 1019, 1361
RsaNI GTAC 5 cut(s) 361, 607, 901, 1018, 1360
RseI CAYNNNNRTG 1 cut(s) 705
SacI GAGCTC 1 cut(s) 885
SaqAI TTAA 6 cut(s) 306, 315, 539, 579, 945, 1200
SatI GCNGC 7 cut(s) 153, 384, 498, 501, 672, 846, 867
Sau3AI GATC 8 cut(s) 78, 199, 328, 619, 683, 730, 1047, 1069
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 2 cut(s) 134, 997
ScrFI CCNGG 6 cut(s) 525, 556, 598, 812, 887, 1304
SduI GDGCHC 2 cut(s) 712, 885
SfaNI GCATC 4 cut(s) 574, 832, 857, 1333
SfcI CTRYAG 2 cut(s) 402, 498
SmiMI CAYNNNNRTG 1 cut(s) 705
SmlI CTYRAG 1 cut(s) 1199
SmoI CTYRAG 1 cut(s) 1199
Sse9I AATT 4 cut(s) 756, 933, 942, 1315
SsiI CCGC 2 cut(s) 277, 1028
SspI AATATT 2 cut(s) 574, 1060
SspMI CTAG 2 cut(s) 234, 822
SstI GAGCTC 1 cut(s) 885
StyD4I CCNGG 6 cut(s) 523, 554, 596, 810, 885, 1302
StyI CCWWGG 4 cut(s) 21, 186, 259, 913
TaaI ACNGT 4 cut(s) 179, 460, 631, 905
TaiI ACGT 1 cut(s) 874
TaqI TCGA 2 cut(s) 174, 1009
TaqII GACCGA 1 cut(s) 137
TasI AATT 4 cut(s) 756, 933, 942, 1315
TatI WGTACW 1 cut(s) 1017
TfiI GAWTC 1 cut(s) 1355
Tru1I TTAA 6 cut(s) 306, 315, 539, 579, 945, 1200
Tru9I TTAA 6 cut(s) 306, 315, 539, 579, 945, 1200
TscAI CASTG 2 cut(s) 752, 1090
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 7 cut(s) 152, 383, 497, 500, 671, 845, 866
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 689, 1209, 1267
TspGWI ACGGA 2 cut(s) 27, 1305
TspRI CASTG 2 cut(s) 752, 1090
Tth111I GACNNNGTC 1 cut(s) 124
Vha464I CTTAAG 1 cut(s) 1199
VspI ATTAAT 1 cut(s) 945
XapI RAATTY 1 cut(s) 1315
XceI RCATGY 2 cut(s) 1216, 1274
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 481
XspI CTAG 2 cut(s) 234, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.