AT4G32750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015245
Physical Location & Seq
Reverse (-)
15795901 .. 15798254
2354 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G32750.1

Sequence Viewer

Length: 882 bp
ATGGCGATCATTGGAGATGCGTTGCGTCAAGCGTTTATGCCAAAGCAAGAGTACGAGAGCCTTAGGGAAGAAGATAGAGCCTGGATTAAGCTTCAGAGGCCGACTTTAGTCTCGATCGTGGCTTTCCTTTGTTTTGTCATCTTCACTTGCACGATCGTCAGCTTGAAAATTGTATTTCCTTCGAATGTTCTTAAGAGGCCATTTTGCAGCGACATAAAGCTACAACCTTTGCCTATCTATGGCAAAGCTCGTGACTCCGATCTCTTTCCCGGTGCTTTTTACTTGACCGATCAAGAAACTGTTGATTATTACTGGATGGTCGTTTTCGTTCCCTCGACTATAATTTTCCTTGTATCATCTGTTTATCTTGTAGCAGGAATTTTTGTGGCTTATTCCGCTCCTCACCGTCATGGGTTTCTAAAAGTCGTTGAAAATAACTACTGTGCTTCAAGAAGAGGTGGGGTCCGTTGTCTGTCAATTCTGAATGTTGTGTTTGCTATCATCTATGGTCTCCTTGCTATATTTCTCGGCTCAAGCCTCCTCACATTAGGAAGCAGCTGTTCTGTGCCTTTGTTTTGGTGCTACGAGATTTCTTCATGGGGTTTAGTAATCTTGTATGCTGGAACTGCTTTCTCCCTTAGAAGAAGAGCTGCTTTAACTATTGACGAAGGAGAGTTTGGGAACAGAAATGATCAGGGCTTGGAGATGCTTGAAGCTAATCCGTTGGAATTCACACCAGACGTTGAAAGACGAGTGAACGAGGGGTTTAAAGCATGGATGGGACCATCTTTATTATCATCTGATGAAGAAGAAGACGAACCTGACTTTTACAATGAAGTGCCGAATGTAACTCATACTCTTTCAAGCAGGCAAAGATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

33.08

Weight (kDa)

5.24

Isoelectric Point (pI)

51.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32750
fragaria_vesca FvH4_2g35990
malus_domestica MD08G1117000.v1.1 MD15G1096600.v1.1
prunus_persica Prupe.1G451500_v2.0.a1
pyrus_communis pycom08g09750 pycom15g08870
rosa_chinensis RchiOBHm_Chr6g0305881
rosa_laevigata RLG00000010850
rosa_roxburghii Rroxscaffold_7G00162250
rosa_rugosa Rorug06G0344600
rosa_samantha Rh6AG456500 Rh6BG444800 Rh6CG470400 Rh6DG457100
rosa_wichuraiana Rw6G039820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 398
AciI CCGC 1 cut(s) 396
AcsI RAATTY 2 cut(s) 378, 728
AcuI CTGAAG 1 cut(s) 77
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 239
AflII CTTAAG 1 cut(s) 191
AgsI TTSAA 6 cut(s) 166, 431, 450, 713, 746, 864
AjnI CCWGG 1 cut(s) 80
AjuI GAANNNNNNNTTGG 2 cut(s) 660, 692
AluBI AGCT 7 cut(s) 91, 162, 220, 248, 558, 650, 716
AluI AGCT 7 cut(s) 91, 162, 220, 248, 558, 650, 716
Alw26I GTCTC 2 cut(s) 115, 515
AoxI GGCC 2 cut(s) 98, 197
ApeKI GCWGC 3 cut(s) 207, 555, 650
ApoI RAATTY 2 cut(s) 378, 728
AspS9I GGNCC 2 cut(s) 463, 782
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 395
AsuII TTCGAA 1 cut(s) 182
AvaII GGWCC 2 cut(s) 463, 782
AxyI CCTNAGG 1 cut(s) 62
BauI CACGAG 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 819
BbvI GCAGC 3 cut(s) 219, 567, 637
BccI CCATC 3 cut(s) 310, 772, 793
BciT130I CCWGG 1 cut(s) 82
BclI TGATCA 1 cut(s) 691
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 2 cut(s) 115, 515
BfrI CTTAAG 1 cut(s) 191
BglII AGATCT 1 cut(s) 875
BisI GCNGC 3 cut(s) 208, 556, 651
BlsI GCNGC 3 cut(s) 209, 557, 652
Bme1390I CCNGG 2 cut(s) 82, 270
Bme18I GGWCC 2 cut(s) 463, 782
BmgT120I GGNCC 2 cut(s) 463, 782
BmiI GGNNCC 2 cut(s) 464, 783
BmrFI CCNGG 2 cut(s) 82, 270
BmsI GCATC 2 cut(s) 7, 696
BoxI GACNNNNGTC 1 cut(s) 107
BpiI GAAGAC 1 cut(s) 819
Bpu14I TTCGAA 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 517
BpuMI CCSGG 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 515
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 317
Bse21I CCTNAGG 1 cut(s) 62
BseBI CCWGG 1 cut(s) 82
BseGI GGATG 2 cut(s) 321, 783
BseLI CCNNNNNNNGG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 2 cut(s) 390, 530
BseXI GCAGC 3 cut(s) 219, 567, 637
Bsh1285I CGRYCG 2 cut(s) 117, 156
BshFI GGCC 2 cut(s) 100, 199
BsiEI CGRYCG 2 cut(s) 117, 156
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 795
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 2 cut(s) 115, 515
BsmFI GGGAC 1 cut(s) 795
BsnI GGCC 2 cut(s) 100, 199
Bso31I GGTCTC 1 cut(s) 515
Bsp119I TTCGAA 1 cut(s) 182
Bsp143I GATC 7 cut(s) 6, 114, 153, 259, 289, 691, 875
BspACI CCGC 1 cut(s) 396
BspANI GGCC 2 cut(s) 100, 199
BspLI GGNNCC 2 cut(s) 464, 783
BspQI GCTCTTC 1 cut(s) 640
BspT104I TTCGAA 1 cut(s) 182
BspTI CTTAAG 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 515
BsrBI CCGCTC 1 cut(s) 398
BsrI ACTGG 1 cut(s) 317
BssMI GATC 7 cut(s) 6, 114, 153, 259, 289, 691, 875
BssSI CACGAG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 82
Bst4CI ACNGT 3 cut(s) 301, 407, 443
Bst6I CTCTTC 2 cut(s) 448, 640
BstAFI CTTAAG 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 869
BstDEI CTNAG 2 cut(s) 62, 638
BstF5I GGATG 2 cut(s) 321, 783
BstKTI GATC 7 cut(s) 9, 117, 156, 262, 292, 694, 878
BstMAI GTCTC 2 cut(s) 115, 515
BstMBI GATC 7 cut(s) 6, 114, 153, 259, 289, 691, 875
BstMCI CGRYCG 2 cut(s) 117, 156
BstMWI GCNNNNNNNGC 3 cut(s) 97, 395, 626
BstNI CCWGG 1 cut(s) 82
BstPAI GACNNNNGTC 1 cut(s) 107
BstSCI CCNGG 2 cut(s) 80, 268
BstV1I GCAGC 3 cut(s) 219, 567, 637
BstV2I GAAGAC 1 cut(s) 819
BstX2I RGATCY 1 cut(s) 875
BstYI RGATCY 1 cut(s) 875
Bsu36I CCTNAGG 1 cut(s) 62
BsuRI GGCC 2 cut(s) 100, 199
BtsCI GGATG 2 cut(s) 321, 783
Cac8I GCNNGC 1 cut(s) 869
Cfr13I GGNCC 2 cut(s) 463, 782
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 52
CviAII CATG 3 cut(s) 410, 597, 774
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 2 cut(s) 62, 638
DpnI GATC 7 cut(s) 8, 116, 155, 261, 291, 693, 877
DpnII GATC 7 cut(s) 6, 114, 153, 259, 289, 691, 875
DraI TTTAAA 1 cut(s) 769
Eam1104I CTCTTC 2 cut(s) 448, 640
EarI CTCTTC 2 cut(s) 448, 640
Eco31I GGTCTC 1 cut(s) 515
Eco47I GGWCC 2 cut(s) 463, 782
Eco57I CTGAAG 1 cut(s) 77
Eco81I CCTNAGG 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 728
EcoRII CCWGG 1 cut(s) 80
FaeI CATG 3 cut(s) 413, 600, 777
FalI AAGNNNNNCTT 2 cut(s) 637, 669
FaqI GGGAC 1 cut(s) 795
FatI CATG 3 cut(s) 409, 596, 773
FbaI TGATCA 1 cut(s) 691
Fnu4HI GCNGC 3 cut(s) 208, 556, 651
FokI GGATG 2 cut(s) 328, 790
Fsp4HI GCNGC 3 cut(s) 208, 556, 651
GluI GCNGC 3 cut(s) 208, 556, 651
HaeIII GGCC 2 cut(s) 100, 199
HapII CCGG 1 cut(s) 270
HgaI GACGC 1 cut(s) 14
Hin1II CATG 3 cut(s) 413, 600, 777
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 1 cut(s) 254
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 1 cut(s) 757
Hpy188I TCNGA 4 cut(s) 96, 259, 483, 802
Hpy188III TCNNGA 5 cut(s) 112, 251, 293, 450, 879
Hpy8I GTNNAC 1 cut(s) 757
HpyAV CCTTC 2 cut(s) 189, 662
HpyCH4III ACNGT 3 cut(s) 301, 407, 443
HpyCH4IV ACGT 1 cut(s) 741
HpyCH4V TGCA 2 cut(s) 150, 207
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 395, 626
HpyF3I CTNAG 2 cut(s) 62, 638
HpySE526I ACGT 1 cut(s) 741
Hsp92II CATG 3 cut(s) 413, 600, 777
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 7 cut(s) 6, 114, 153, 259, 289, 691, 875
LguI GCTCTTC 1 cut(s) 640
LmnI GCTCC 1 cut(s) 403
Lsp1109I GCAGC 3 cut(s) 219, 567, 637
LweI GCATC 2 cut(s) 7, 696
MaeII ACGT 1 cut(s) 741
MaeIII GTNAC 2 cut(s) 251, 847
MalI GATC 7 cut(s) 8, 116, 155, 261, 291, 693, 877
MbiI CCGCTC 1 cut(s) 398
MboI GATC 7 cut(s) 6, 114, 153, 259, 289, 691, 875
MflI RGATCY 1 cut(s) 875
MluCI AATT 5 cut(s) 168, 342, 378, 477, 728
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 705
MnlI CCTC 8 cut(s) 90, 189, 343, 411, 449, 548, 551, 754
MseI TTAA 4 cut(s) 87, 192, 656, 768
MslI CAYNNNNRTG 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 558
MspCI CTTAAG 1 cut(s) 191
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 2 cut(s) 82, 270
MvaI CCWGG 1 cut(s) 82
MwoI GCNNNNNNNGC 3 cut(s) 97, 395, 626
NciI CCSGG 1 cut(s) 270
NdeII GATC 7 cut(s) 6, 114, 153, 259, 289, 691, 875
NlaIII CATG 3 cut(s) 413, 600, 777
NlaIV GGNNCC 2 cut(s) 464, 783
NmeAIII GCCGAG 1 cut(s) 507
NmuCI GTSAC 1 cut(s) 251
NspV TTCGAA 1 cut(s) 182
PciSI GCTCTTC 1 cut(s) 640
PkrI GCNGC 3 cut(s) 209, 557, 652
Ple19I CGATCG 2 cut(s) 117, 156
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PshAI GACNNNNGTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
PspN4I GGNNCC 2 cut(s) 464, 783
PspPI GGNCC 2 cut(s) 463, 782
PsuI RGATCY 1 cut(s) 875
PvuI CGATCG 2 cut(s) 117, 156
PvuII CAGCTG 1 cut(s) 558
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 408
SapI GCTCTTC 1 cut(s) 640
SaqAI TTAA 4 cut(s) 87, 192, 656, 768
SatI GCNGC 3 cut(s) 208, 556, 651
Sau3AI GATC 7 cut(s) 6, 114, 153, 259, 289, 691, 875
Sau96I GGNCC 2 cut(s) 463, 782
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 82, 270
SfaNI GCATC 2 cut(s) 7, 696
SfuI TTCGAA 1 cut(s) 182
SinI GGWCC 2 cut(s) 463, 782
SmiMI CAYNNNNRTG 1 cut(s) 408
SmlI CTYRAG 2 cut(s) 191, 532
SmoI CTYRAG 2 cut(s) 191, 532
Sse9I AATT 5 cut(s) 168, 342, 378, 477, 728
SsiI CCGC 1 cut(s) 396
StyD4I CCNGG 2 cut(s) 80, 268
TaaI ACNGT 3 cut(s) 301, 407, 443
TaiI ACGT 1 cut(s) 744
TaqI TCGA 3 cut(s) 113, 182, 335
TaqII GACCGA 1 cut(s) 302
TasI AATT 5 cut(s) 168, 342, 378, 477, 728
Tru1I TTAA 4 cut(s) 87, 192, 656, 768
Tru9I TTAA 4 cut(s) 87, 192, 656, 768
TseFI GTSAC 1 cut(s) 251
TseI GCWGC 3 cut(s) 207, 555, 650
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 3 cut(s) 585, 819, 849
TspGWI ACGGA 2 cut(s) 455, 711
Vha464I CTTAAG 1 cut(s) 191
VpaK11BI GGWCC 2 cut(s) 463, 782
XapI RAATTY 2 cut(s) 378, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.