Prupe.1G451500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015245
Physical Location & Seq
Forward (+)
38016689 .. 38020447
3759 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G451500.1

Sequence Viewer

Length: 825 bp
ATGGCGATAATCGGCGACGCGCTTCGCCAGGCCTTCATGCCCAAGCACGAGTACTTGAGCCTCCGGGAAGAAGACAGAGCTTGGGGCAAGATTCAGAGACCTCTGTTAATGGCTTCCATGGCTCTCGTCTGTTTCGTAGTTGTTGTGTGCACGGTTATCAGCTTGAACATTGTGTTTCCTGGCGACCCGGCGAAGCGGCCGTTCTGCGGCGACCGGAGGCTTAATTCTCTACCGATGAATGTGAGAGGGGGCGATTCTGATCCGTTTCCCGGAGCGTTTTATCTTACGGATCAAGAGATTGCGGATTACTATTGGATGGTTGTGTTCGTTCCCTCTATGATCATTTTCTTGGCTACCTTCGTGTATCTTGTTGCGGGAATCGCTGTTGCTTATTCTGCTCCAACAAGACACGGATGCTTAAAGGTGGTTGAGAATAACTACTGTGCTTCAAAAAGAGGTGGGGTTCGATGCCTATCTATTCTGAATGCTGTCTTTGCTGTCATTTTTGGTCTTCTTGCATTGTTTCTTGGTTCAAGCCTCCTCACACAAGGAAGCTCCTGCTCTATGCCCCTGTTCTGGTGCTATGAGGGTGGGTGTTGGGGGATGGTTCTTCTATACGGAGGAACTGCCTTTTTTCTGAGAAGGAGAGCAGCTGCAATCCTTGATGAGGGAGAATTTGGTGGTCGAAACCTAGGGCTTGAAATGTTGGAGAATCCCTTGGAAGTGACACCAGAGGTGGAAAGGCGGGTTAATGAAGGGTTTAAGACATGGATGGGGTCGTCGCTCCTATCGTCCGATGAAGAAGATGAACCAAACAGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

30.34

Weight (kDa)

5.2

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32750
fragaria_vesca FvH4_2g35990
malus_domestica MD08G1117000.v1.1 MD15G1096600.v1.1
prunus_persica Prupe.1G451500_v2.0.a1
pyrus_communis pycom08g09750 pycom15g08870
rosa_chinensis RchiOBHm_Chr6g0305881
rosa_laevigata RLG00000010850
rosa_roxburghii Rroxscaffold_7G00162250
rosa_rugosa Rorug06G0344600
rosa_samantha Rh6AG456500 Rh6BG444800 Rh6CG470400 Rh6DG457100
rosa_wichuraiana Rw6G039820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 20
AciI CCGC 5 cut(s) 196, 207, 302, 374, 745
AclWI GGATC 2 cut(s) 254, 297
AcoI YGGCCR 1 cut(s) 197
AcsI RAATTY 1 cut(s) 674
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 4 cut(s) 206, 269, 576, 667
AgsI TTSAA 4 cut(s) 166, 450, 534, 701
AjnI CCWGG 2 cut(s) 27, 178
AluBI AGCT 4 cut(s) 80, 162, 555, 653
AluI AGCT 4 cut(s) 80, 162, 555, 653
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 91
Alw44I GTGCAC 1 cut(s) 148
AlwI GGATC 2 cut(s) 254, 297
AoxI GGCC 2 cut(s) 30, 197
ApaLI GTGCAC 1 cut(s) 148
ApeKI GCWGC 2 cut(s) 650, 653
ApoI RAATTY 1 cut(s) 674
AspA2I CCTAGG 1 cut(s) 691
AspLEI GCGC 1 cut(s) 22
AsuC2I CCSGG 3 cut(s) 65, 188, 270
AvrII CCTAGG 1 cut(s) 691
BaeGI GKGCMC 1 cut(s) 152
BauI CACGAG 1 cut(s) 47
BbsI GAAGAC 2 cut(s) 78, 503
Bbv12I GWGCWC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 640, 662
BccI CCATC 3 cut(s) 310, 598, 766
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 2 cut(s) 29, 180
BclI TGATCA 1 cut(s) 339
BcnI CCSGG 3 cut(s) 65, 188, 270
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 1 cut(s) 692
BisI GCNGC 4 cut(s) 197, 208, 651, 654
BlnI CCTAGG 1 cut(s) 691
BlsI GCNGC 4 cut(s) 198, 209, 652, 655
BmcAI AGTACT 1 cut(s) 53
Bme1390I CCNGG 5 cut(s) 29, 65, 180, 188, 270
BmrFI CCNGG 5 cut(s) 29, 65, 180, 188, 270
BmsI GCATC 2 cut(s) 404, 458
BpiI GAAGAC 2 cut(s) 78, 503
BpuEI CTTGAG 1 cut(s) 76
BpuMI CCSGG 3 cut(s) 65, 188, 270
BsaBI GATNNNNATC 2 cut(s) 258, 472
BsaI GGTCTC 1 cut(s) 91
BsaJI CCNNGG 3 cut(s) 117, 691, 717
BsaWI WCCGGW 1 cut(s) 213
Bsc4I CCNNNNNNNGG 4 cut(s) 206, 269, 576, 667
Bse8I GATNNNNATC 2 cut(s) 258, 472
BseBI CCWGG 2 cut(s) 29, 180
BseDI CCNNGG 3 cut(s) 117, 691, 717
BseGI GGATG 4 cut(s) 321, 419, 609, 777
BseJI GATNNNNATC 2 cut(s) 258, 472
BseLI CCNNNNNNNGG 4 cut(s) 206, 269, 576, 667
BseMII CTCAG 1 cut(s) 629
BseRI GAGGAG 1 cut(s) 530
BseSI GKGCMC 1 cut(s) 152
BseX3I CGGCCG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 640, 662
Bsh1236I CGCG 1 cut(s) 20
Bsh1285I CGRYCG 2 cut(s) 200, 214
BshFI GGCC 2 cut(s) 32, 199
BsiEI CGRYCG 2 cut(s) 200, 214
BsiHKAI GWGCWC 1 cut(s) 152
BsiSI CCGG 4 cut(s) 64, 188, 214, 270
BslI CCNNNNNNNGG 4 cut(s) 206, 269, 576, 667
BsmAI GTCTC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 2 cut(s) 32, 199
Bso31I GGTCTC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 3 cut(s) 259, 289, 339
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 5 cut(s) 196, 207, 302, 374, 745
BspANI GGCC 2 cut(s) 32, 199
BspCNI CTCAG 1 cut(s) 630
BspFNI CGCG 1 cut(s) 20
BspPI GGATC 2 cut(s) 254, 297
BspTNI GGTCTC 1 cut(s) 91
BssECI CCNNGG 3 cut(s) 117, 691, 717
BssMI GATC 3 cut(s) 259, 289, 339
BssSI CACGAG 1 cut(s) 47
BssT1I CCWWGG 3 cut(s) 117, 691, 717
Bst2BI CACGAG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 29, 180
Bst4CI ACNGT 3 cut(s) 154, 443, 818
BstDEI CTNAG 1 cut(s) 638
BstDSI CCRYGG 1 cut(s) 117
BstENI CCTNNNNNAGG 1 cut(s) 665
BstF5I GGATG 4 cut(s) 321, 419, 609, 777
BstFNI CGCG 1 cut(s) 20
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 3 cut(s) 262, 292, 342
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 3 cut(s) 259, 289, 339
BstMCI CGRYCG 2 cut(s) 200, 214
BstMWI GCNNNNNNNGC 4 cut(s) 119, 380, 395, 494
BstNI CCWGG 2 cut(s) 29, 180
BstSCI CCNGG 5 cut(s) 27, 63, 178, 186, 268
BstSLI GKGCMC 1 cut(s) 152
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 640, 662
BstV2I GAAGAC 2 cut(s) 78, 503
BstZI CGGCCG 1 cut(s) 197
BsuRI GGCC 2 cut(s) 32, 199
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 4 cut(s) 321, 419, 609, 777
CfoI GCGC 1 cut(s) 22
CseI GACGC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 52
CviAII CATG 3 cut(s) 37, 118, 768
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 1 cut(s) 638
DpnI GATC 3 cut(s) 261, 291, 341
DpnII GATC 3 cut(s) 259, 289, 339
EaeI YGGCCR 1 cut(s) 197
EagI CGGCCG 1 cut(s) 197
EclXI CGGCCG 1 cut(s) 197
Eco130I CCWWGG 3 cut(s) 117, 691, 717
Eco147I AGGCCT 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 91
Eco52I CGGCCG 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 665
EcoRII CCWGG 2 cut(s) 27, 178
EcoT14I CCWWGG 3 cut(s) 117, 691, 717
ErhI CCWWGG 3 cut(s) 117, 691, 717
FaeI CATG 3 cut(s) 40, 121, 771
FaiI YATR 7 cut(s) 38, 119, 338, 566, 585, 616, 769
FatI CATG 3 cut(s) 36, 117, 767
FauI CCCGC 2 cut(s) 367, 738
FbaI TGATCA 1 cut(s) 339
Fnu4HI GCNGC 4 cut(s) 197, 208, 651, 654
FokI GGATG 4 cut(s) 328, 426, 616, 784
Fsp4HI GCNGC 4 cut(s) 197, 208, 651, 654
FspBI CTAG 1 cut(s) 692
GlaI GCGC 1 cut(s) 21
GluI GCNGC 4 cut(s) 197, 208, 651, 654
HaeIII GGCC 2 cut(s) 32, 199
HapII CCGG 4 cut(s) 64, 188, 214, 270
HgaI GACGC 1 cut(s) 26
HhaI GCGC 1 cut(s) 22
Hin1II CATG 3 cut(s) 40, 121, 771
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HinfI GANTC 4 cut(s) 91, 254, 378, 712
HpaII CCGG 4 cut(s) 64, 188, 214, 270
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 5 cut(s) 96, 259, 483, 639, 796
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 1 cut(s) 150
Hpy99I CGWCG 2 cut(s) 20, 784
HpyAV CCTTC 4 cut(s) 43, 367, 636, 749
HpyCH4III ACNGT 3 cut(s) 154, 443, 818
HpyCH4V TGCA 3 cut(s) 150, 518, 656
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 380, 395, 494
HpyF3I CTNAG 1 cut(s) 638
Hsp92II CATG 3 cut(s) 40, 121, 771
HspAI GCGC 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 339
Kzo9I GATC 3 cut(s) 259, 289, 339
LmnI GCTCC 4 cut(s) 272, 403, 560, 789
Lsp1109I GCAGC 2 cut(s) 640, 662
LweI GCATC 2 cut(s) 404, 458
MaeI CTAG 1 cut(s) 692
MaeIII GTNAC 1 cut(s) 724
MalI GATC 3 cut(s) 261, 291, 341
MboI GATC 3 cut(s) 259, 289, 339
MboII GAAGA 6 cut(s) 80, 83, 503, 602, 812, 815
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 2 cut(s) 223, 674
MmeI TCCRAC 2 cut(s) 425, 687
MseI TTAA 5 cut(s) 107, 222, 419, 750, 762
MspA1I CMGCKG 1 cut(s) 653
MspI CCGG 4 cut(s) 64, 188, 214, 270
MspR9I CCNGG 5 cut(s) 29, 65, 180, 188, 270
Mva1269I GAATGC 1 cut(s) 490
MvaI CCWGG 2 cut(s) 29, 180
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 4 cut(s) 119, 380, 395, 494
NciI CCSGG 3 cut(s) 65, 188, 270
NcoI CCATGG 1 cut(s) 117
NdeII GATC 3 cut(s) 259, 289, 339
NlaIII CATG 3 cut(s) 40, 121, 771
NmuCI GTSAC 1 cut(s) 724
PceI AGGCCT 1 cut(s) 32
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 788
PctI GAATGC 1 cut(s) 490
PfeI GAWTC 4 cut(s) 91, 254, 378, 712
PfoI TCCNGGA 2 cut(s) 63, 268
PkrI GCNGC 4 cut(s) 198, 209, 652, 655
Psp6I CCWGG 2 cut(s) 27, 178
PspGI CCWGG 2 cut(s) 27, 178
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SaqAI TTAA 5 cut(s) 107, 222, 419, 750, 762
SatI GCNGC 4 cut(s) 197, 208, 651, 654
Sau3AI GATC 3 cut(s) 259, 289, 339
ScaI AGTACT 1 cut(s) 53
ScrFI CCNGG 5 cut(s) 29, 65, 180, 188, 270
SduI GDGCHC 1 cut(s) 152
SfaNI GCATC 2 cut(s) 404, 458
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 2 cut(s) 223, 674
SseBI AGGCCT 1 cut(s) 32
SsiI CCGC 5 cut(s) 196, 207, 302, 374, 745
SspMI CTAG 1 cut(s) 692
StuI AGGCCT 1 cut(s) 32
StyD4I CCNGG 5 cut(s) 27, 63, 178, 186, 268
StyI CCWWGG 3 cut(s) 117, 691, 717
TaaI ACNGT 3 cut(s) 154, 443, 818
TaqI TCGA 2 cut(s) 466, 685
TasI AATT 2 cut(s) 223, 674
TatI WGTACW 1 cut(s) 51
TauI GCSGC 2 cut(s) 199, 210
TfiI GAWTC 4 cut(s) 91, 254, 378, 712
Tru1I TTAA 5 cut(s) 107, 222, 419, 750, 762
Tru9I TTAA 5 cut(s) 107, 222, 419, 750, 762
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 2 cut(s) 650, 653
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 5 cut(s) 25, 251, 768, 813, 822
TspGWI ACGGA 4 cut(s) 252, 302, 426, 633
VneI GTGCAC 1 cut(s) 148
XagI CCTNNNNNAGG 1 cut(s) 665
XapI RAATTY 1 cut(s) 674
XmaJI CCTAGG 1 cut(s) 691
XspI CTAG 1 cut(s) 692
ZrmI AGTACT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.