MD08G1117000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0015245
Physical Location & Seq
Forward (+)
10712450 .. 10714736
2287 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1117000.v1.1.491

Sequence Viewer

Length: 819 bp
ATGGCGATAATCGGCGACGCACTTCTTCAGGCATTCATGCCGAAGCGCGAGTACGAGAGCCTCCGAGAGGAAGACAGGGCGTGGGAGAAGCTCCAGAGACCGCTGTTAATGGCGTTTGTGGCTTTGGTCTGCCTCGTCATTGTTGTGTGCACGGTTATCAGCTTGAATATTGTGTTTTCGGCCAACTCGGCTAAGCGACCGTTCTGCGGCGACCGGAGGCTTAATTCGTTGATGAATGTGAGAGGTGGGGATTCTAATCCATTTCTCGGAGCTTTTTATCTTACGGATCAGGAGATTGCCGAGTACTATTGGATGGTTGTGTTCATTCCCTTGATCATTTTCTTGGCTACTTTCGTGTACCTCATCGCGGGAATCATTGTTGCTTATTCTGCTCCTACACGACATGGATGCTTAAAGGTTGTTGAAAATAACTATTGTGCTTCAAAAAGAGGTGGGGTTCGATGTCTATCAATTCTGAATGCCGTCTTTGCTGTCATATTTGGTCTACTTGCATTGTTTCTTGGTTCAAGCCTCCTCACACAAGGAAGCTTCTGCTTTGTGCCCCTTTTCTGGTGCTATAAGGTTGGTTCTTGGAAAATGGTTATTTTATATGGAGGAACCGCTTTCTTTCTAAGAAGGAGAGCAACGTCAATCCCTGATGAGGGAGACTTTAGTGGTCGAAACCTAGGGCTAGAAATGTTGGAGAATCCCATAGAAGTTTCACCAGAGGTGGAAAGGCGAGTTAACGAAGGGTTTAAAGCATGGATGGGGTCATCACTCCTATCGTCTGATGAAGAAGATGAACTTGGCAGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

30.4

Weight (kDa)

5.42

Isoelectric Point (pI)

51.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32750
fragaria_vesca FvH4_2g35990
malus_domestica MD08G1117000.v1.1 MD15G1096600.v1.1
prunus_persica Prupe.1G451500_v2.0.a1
pyrus_communis pycom08g09750 pycom15g08870
rosa_chinensis RchiOBHm_Chr6g0305881
rosa_laevigata RLG00000010850
rosa_roxburghii Rroxscaffold_7G00162250
rosa_rugosa Rorug06G0344600
rosa_samantha Rh6AG456500 Rh6BG444800 Rh6CG470400 Rh6DG457100
rosa_wichuraiana Rw6G039820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 505
AccII CGCG 2 cut(s) 48, 368
AciI CCGC 4 cut(s) 101, 207, 368, 621
AclWI GGATC 1 cut(s) 294
AcoI YGGCCR 1 cut(s) 180
AcuI CTGAAG 1 cut(s) 11
AfaI GTAC 3 cut(s) 53, 305, 359
AfiI CCNNNNNNNGG 7 cut(s) 67, 206, 266, 367, 570, 661, 662
AgsI TTSAA 4 cut(s) 166, 425, 444, 528
AjuI GAANNNNNNNTTGG 1 cut(s) 789
AluBI AGCT 4 cut(s) 91, 162, 272, 549
AluI AGCT 4 cut(s) 91, 162, 272, 549
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 2 cut(s) 91, 660
Alw44I GTGCAC 1 cut(s) 148
AlwI GGATC 1 cut(s) 294
AoxI GGCC 1 cut(s) 180
ApaLI GTGCAC 1 cut(s) 148
AspA2I CCTAGG 1 cut(s) 685
AspLEI GCGC 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 714
AvrII CCTAGG 1 cut(s) 685
BaeGI GKGCMC 2 cut(s) 152, 564
BarI GAAGNNNNNNTAC 2 cut(s) 35, 67
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 152
BccI CCATC 2 cut(s) 307, 760
BceAI ACGGC 1 cut(s) 467
BcgI CGANNNNNNTGC 4 cut(s) 186, 220, 390, 424
BclI TGATCA 1 cut(s) 333
BcoDI GTCTC 2 cut(s) 91, 660
BfaI CTAG 2 cut(s) 686, 692
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 1 cut(s) 208
BlnI CCTAGG 1 cut(s) 685
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 209
BmcAI AGTACT 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 619
BmsI GCATC 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 77
Bpu1102I GCTNAGC 1 cut(s) 192
BsaBI GATNNNNATC 2 cut(s) 255, 466
BsaI GGTCTC 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 685
BsaWI WCCGGW 1 cut(s) 213
Bsc4I CCNNNNNNNGG 7 cut(s) 67, 206, 266, 367, 570, 661, 662
Bse8I GATNNNNATC 2 cut(s) 255, 466
BseDI CCNNGG 1 cut(s) 685
BseGI GGATG 3 cut(s) 318, 413, 771
BseJI GATNNNNATC 2 cut(s) 255, 466
BseLI CCNNNNNNNGG 7 cut(s) 67, 206, 266, 367, 570, 661, 662
BseRI GAGGAG 1 cut(s) 524
BseSI GKGCMC 2 cut(s) 152, 564
Bsh1236I CGCG 2 cut(s) 48, 368
Bsh1285I CGRYCG 2 cut(s) 200, 214
BshFI GGCC 1 cut(s) 182
BsiEI CGRYCG 2 cut(s) 200, 214
BsiHKAI GWGCWC 1 cut(s) 152
BsiSI CCGG 1 cut(s) 214
BslI CCNNNNNNNGG 7 cut(s) 67, 206, 266, 367, 570, 661, 662
BsmAI GTCTC 2 cut(s) 91, 660
BsmI GAATGC 2 cut(s) 32, 484
BsnI GGCC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 91
Bsp1286I GDGCHC 2 cut(s) 152, 564
Bsp143I GATC 2 cut(s) 286, 333
Bsp1720I GCTNAGC 1 cut(s) 192
BspACI CCGC 4 cut(s) 101, 207, 368, 621
BspANI GGCC 1 cut(s) 182
BspFNI CGCG 2 cut(s) 48, 368
BspLI GGNNCC 1 cut(s) 619
BspPI GGATC 1 cut(s) 294
BspTNI GGTCTC 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 685
BssMI GATC 2 cut(s) 286, 333
BssT1I CCWWGG 1 cut(s) 685
Bst4CI ACNGT 2 cut(s) 154, 201
BstDEI CTNAG 2 cut(s) 192, 632
BstENI CCTNNNNNAGG 1 cut(s) 65
BstF5I GGATG 3 cut(s) 318, 413, 771
BstFNI CGCG 2 cut(s) 48, 368
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 2 cut(s) 289, 336
BstMAI GTCTC 2 cut(s) 91, 660
BstMBI GATC 2 cut(s) 286, 333
BstMCI CGRYCG 2 cut(s) 200, 214
BstMWI GCNNNNNNNGC 4 cut(s) 119, 188, 389, 488
BstSLI GKGCMC 2 cut(s) 152, 564
BstUI CGCG 2 cut(s) 48, 368
BstV2I GAAGAC 1 cut(s) 78
BsuRI GGCC 1 cut(s) 182
BtgZI GCGATG 1 cut(s) 349
BtsCI GGATG 3 cut(s) 318, 413, 771
BtsI GCAGTG 1 cut(s) 817
BtsIMutI CAGTG 1 cut(s) 817
CfoI GCGC 1 cut(s) 48
CseI GACGC 1 cut(s) 26
Csp6I GTAC 3 cut(s) 52, 304, 358
CviAII CATG 3 cut(s) 37, 404, 762
CviQI GTAC 3 cut(s) 52, 304, 358
DdeI CTNAG 2 cut(s) 192, 632
DpnI GATC 2 cut(s) 288, 335
DpnII GATC 2 cut(s) 286, 333
DraI TTTAAA 1 cut(s) 757
EaeI YGGCCR 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 685
Eco31I GGTCTC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 11
EcoNI CCTNNNNNAGG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 685
ErhI CCWWGG 1 cut(s) 685
FaeI CATG 3 cut(s) 40, 407, 765
FaiI YATR 8 cut(s) 38, 405, 497, 579, 610, 612, 713, 763
FalI AAGNNNNNCTT 1 cut(s) 789
FatI CATG 3 cut(s) 36, 403, 761
FauI CCCGC 1 cut(s) 361
FbaI TGATCA 1 cut(s) 333
FblI GTMKAC 1 cut(s) 505
Fnu4HI GCNGC 1 cut(s) 208
FokI GGATG 3 cut(s) 325, 420, 778
Fsp4HI GCNGC 1 cut(s) 208
FspBI CTAG 2 cut(s) 686, 692
GlaI GCGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 208
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 1 cut(s) 182
HapII CCGG 1 cut(s) 214
HgaI GACGC 1 cut(s) 26
HhaI GCGC 1 cut(s) 48
Hin1II CATG 3 cut(s) 40, 407, 765
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HindIII AAGCTT 1 cut(s) 547
HinfI GANTC 3 cut(s) 251, 372, 706
HpaI GTTAAC 1 cut(s) 745
HpaII CCGG 1 cut(s) 214
HphI GGTGA 1 cut(s) 714
Hpy166II GTNNAC 4 cut(s) 150, 358, 506, 745
Hpy188I TCNGA 4 cut(s) 65, 269, 477, 790
Hpy188III TCNNGA 2 cut(s) 94, 290
Hpy8I GTNNAC 4 cut(s) 150, 358, 506, 745
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 630, 743
HpyCH4III ACNGT 2 cut(s) 154, 201
HpyCH4IV ACGT 1 cut(s) 647
HpyCH4V TGCA 2 cut(s) 150, 512
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 188, 389, 488
HpyF3I CTNAG 2 cut(s) 192, 632
HpySE526I ACGT 1 cut(s) 647
Hsp92II CATG 3 cut(s) 40, 407, 765
HspAI GCGC 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 333
KspAI GTTAAC 1 cut(s) 745
Kzo9I GATC 2 cut(s) 286, 333
LmnI GCTCC 3 cut(s) 96, 269, 397
LpnPI CCDG 8 cut(s) 14, 61, 107, 227, 275, 556, 669, 738
LweI GCATC 1 cut(s) 398
MaeI CTAG 2 cut(s) 686, 692
MaeII ACGT 1 cut(s) 647
MalI GATC 2 cut(s) 288, 335
MboI GATC 2 cut(s) 286, 333
MboII GAAGA 4 cut(s) 17, 83, 806, 809
MhlI GDGCHC 2 cut(s) 152, 564
MluCI AATT 2 cut(s) 223, 471
MmeI TCCRAC 1 cut(s) 681
MseI TTAA 6 cut(s) 107, 222, 413, 744, 756, 817
MslI CAYNNNNRTG 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 1 cut(s) 214
Mva1269I GAATGC 2 cut(s) 32, 484
MvnI CGCG 2 cut(s) 48, 368
MwoI GCNNNNNNNGC 4 cut(s) 119, 188, 389, 488
NdeII GATC 2 cut(s) 286, 333
NlaIII CATG 3 cut(s) 40, 407, 765
NlaIV GGNNCC 1 cut(s) 619
NmeAIII GCCGAG 2 cut(s) 167, 325
PctI GAATGC 2 cut(s) 32, 484
PfeI GAWTC 3 cut(s) 251, 372, 706
PkrI GCNGC 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 619
RsaI GTAC 3 cut(s) 53, 305, 359
RsaNI GTAC 3 cut(s) 52, 304, 358
RseI CAYNNNNRTG 1 cut(s) 143
SaqAI TTAA 6 cut(s) 107, 222, 413, 744, 756, 817
SatI GCNGC 1 cut(s) 208
Sau3AI GATC 2 cut(s) 286, 333
ScaI AGTACT 1 cut(s) 305
SduI GDGCHC 2 cut(s) 152, 564
SfaNI GCATC 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 143
Sse9I AATT 2 cut(s) 223, 471
SsiI CCGC 4 cut(s) 101, 207, 368, 621
SspI AATATT 1 cut(s) 169
SspMI CTAG 2 cut(s) 686, 692
StyI CCWWGG 1 cut(s) 685
TaaI ACNGT 2 cut(s) 154, 201
TaiI ACGT 1 cut(s) 650
TaqI TCGA 2 cut(s) 460, 679
TasI AATT 2 cut(s) 223, 471
TatI WGTACW 1 cut(s) 303
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 3 cut(s) 251, 372, 706
Tru1I TTAA 6 cut(s) 107, 222, 413, 744, 756, 817
Tru9I TTAA 6 cut(s) 107, 222, 413, 744, 756, 817
TscAI CASTG 1 cut(s) 817
TspDTI ATGAA 5 cut(s) 25, 248, 313, 807, 816
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 1 cut(s) 817
VneI GTGCAC 1 cut(s) 148
XagI CCTNNNNNAGG 1 cut(s) 65
XmaJI CCTAGG 1 cut(s) 685
XmiI GTMKAC 1 cut(s) 505
XspI CTAG 2 cut(s) 686, 692
ZrmI AGTACT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.