RLG00000010850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015245
Physical Location & Seq
Forward (+)
4795099 .. 4797714
2616 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010850

Sequence Viewer

Length: 840 bp
ATGGAGATAATCGGCGACGCGCTTCGCCAGGCGTTCATGCCCAAGCGCGAGTACGAGAGCCTCCGGGAAGAAGACAGAGCGTGGGGGAAGCTCCAGAGGCCTGTGTTGATGGCGGCCGTGGCTTTCATCTGCCTTTCAATCCTCCTCTGCGCGATTATCAGCTTGAACATTGTGTTTCCGGCCGACGCGAACCGGCGGCCGTTCTGTGGCGACCGAAGGCTTAATTCGCTGCCGATGAATGTCAGAGGCGCCGATTCCGATTCCGATTCCGATTCGTTTAATGGTGCGTTTTATCTGACGGACCAGGAGACTGTGGATTACTATTGGATGGTGGTGTTCATTCCCTCCATGATCATTTTCTTGGCCACGGTGGTGTATCTTGTTGCCGGAATCACTGTCGCTTATTCTGCCCCAACAAGGAATGGATGCTTAATGGTAGTTGAAAATAACTACTGTGCTTCAAAAAGAGGTGGGGTACGATGTCTATCAATTCTGAATGCTGTCTTTGCTATCATATTTGGTCTTCTTGCCTTGTTTCTTGGTACAAGCCTCCTCACATTAGGGGGAAGCTACTGCTCTGTGCCTCTATTCTGGTGCTACGAGATTGGCACTTGGGGGCTCGTTTTTCTGTACGGAGGGACTGCCTTCTTCCTGAGAAGGAGAGCAGCTGTAATCCTTGATGAAGGGGAATTTGGTGGCCGAAACTTGGGGCTTGAAATGTTGGAGAATCCCGTGGAAGTGACACCAGACATGGAAAGGCGGGTTGAAGAAGGGTTTAAAACATGGATGGGGTCATCACTCCTATCTTCCGATGAAGAAGATGAACCTGAGAGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

31.12

Weight (kDa)

4.63

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32750
fragaria_vesca FvH4_2g35990
malus_domestica MD08G1117000.v1.1 MD15G1096600.v1.1
prunus_persica Prupe.1G451500_v2.0.a1
pyrus_communis pycom08g09750 pycom15g08870
rosa_chinensis RchiOBHm_Chr6g0305881
rosa_laevigata RLG00000010850
rosa_roxburghii Rroxscaffold_7G00162250
rosa_rugosa Rorug06G0344600
rosa_samantha Rh6AG456500 Rh6BG444800 Rh6CG470400 Rh6DG457100
rosa_wichuraiana Rw6G039820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 248
AccII CGCG 4 cut(s) 20, 48, 152, 188
AciI CCGC 3 cut(s) 113, 196, 760
AcoI YGGCCR 5 cut(s) 114, 180, 197, 363, 697
AcsI RAATTY 1 cut(s) 689
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 4 cut(s) 53, 477, 544, 632
AfiI CCNNNNNNNGG 3 cut(s) 206, 417, 706
AgsI TTSAA 6 cut(s) 138, 166, 443, 462, 716, 767
AjnI CCWGG 2 cut(s) 27, 303
AjuI GAANNNNNNNTTGG 2 cut(s) 675, 707
AleI CACNNNNGTG 1 cut(s) 371
AluBI AGCT 4 cut(s) 91, 162, 570, 668
AluI AGCT 4 cut(s) 91, 162, 570, 668
Alw26I GTCTC 1 cut(s) 302
AoxI GGCC 6 cut(s) 98, 114, 180, 197, 363, 697
ApeKI GCWGC 2 cut(s) 229, 665
ApoI RAATTY 1 cut(s) 689
AspLEI GCGC 4 cut(s) 22, 48, 152, 251
AspS9I GGNCC 1 cut(s) 301
AsuC2I CCSGG 1 cut(s) 65
AvaII GGWCC 1 cut(s) 301
BalI TGGCCA 1 cut(s) 365
BanI GGYRCC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 621
BbsI GAAGAC 2 cut(s) 78, 515
BbvI GCAGC 2 cut(s) 216, 677
BccI CCATC 3 cut(s) 103, 322, 781
BceAI ACGGC 2 cut(s) 101, 184
BciT130I CCWGG 2 cut(s) 29, 305
BclI TGATCA 1 cut(s) 351
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 1 cut(s) 302
BfoI RGCGCY 1 cut(s) 252
BisI GCNGC 4 cut(s) 114, 197, 230, 666
BlsI GCNGC 4 cut(s) 115, 198, 231, 667
Bme1390I CCNGG 3 cut(s) 29, 65, 305
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 3 cut(s) 29, 65, 305
BmsI GCATC 1 cut(s) 416
BpiI GAAGAC 2 cut(s) 78, 515
BpmI CTGGAG 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 65
BsaBI GATNNNNATC 1 cut(s) 484
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 3 cut(s) 117, 366, 732
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 417, 706
Bse118I RCCGGY 1 cut(s) 192
Bse8I GATNNNNATC 1 cut(s) 484
BseBI CCWGG 2 cut(s) 29, 305
BseDI CCNNGG 3 cut(s) 117, 366, 732
BseGI GGATG 3 cut(s) 333, 431, 792
BseJI GATNNNNATC 1 cut(s) 484
BseLI CCNNNNNNNGG 3 cut(s) 206, 417, 706
BseMII CTCAG 2 cut(s) 644, 819
BseRI GAGGAG 2 cut(s) 134, 542
BseX3I CGGCCG 3 cut(s) 114, 180, 197
BseXI GCAGC 2 cut(s) 216, 677
Bsh1236I CGCG 4 cut(s) 20, 48, 152, 188
Bsh1285I CGRYCG 4 cut(s) 117, 183, 200, 214
BshFI GGCC 6 cut(s) 100, 116, 182, 199, 365, 699
BshNI GGYRCC 1 cut(s) 248
BsiEI CGRYCG 4 cut(s) 117, 183, 200, 214
BsiSI CCGG 4 cut(s) 64, 179, 193, 387
BslFI GGGAC 1 cut(s) 652
BslI CCNNNNNNNGG 3 cut(s) 206, 417, 706
BsmAI GTCTC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 652
BsmI GAATGC 1 cut(s) 502
BsnI GGCC 6 cut(s) 100, 116, 182, 199, 365, 699
Bsp1286I GDGCHC 1 cut(s) 621
Bsp143I GATC 1 cut(s) 351
BspACI CCGC 3 cut(s) 113, 196, 760
BspANI GGCC 6 cut(s) 100, 116, 182, 199, 365, 699
BspCNI CTCAG 2 cut(s) 645, 820
BspFNI CGCG 4 cut(s) 20, 48, 152, 188
BspLI GGNNCC 1 cut(s) 250
BspT107I GGYRCC 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 192
BssAI RCCGGY 1 cut(s) 192
BssECI CCNNGG 3 cut(s) 117, 366, 732
BssMI GATC 1 cut(s) 351
BssNI GRCGYC 1 cut(s) 249
Bst2UI CCWGG 2 cut(s) 29, 305
Bst4CI ACNGT 4 cut(s) 313, 370, 397, 455
BstACI GRCGYC 1 cut(s) 249
BstDEI CTNAG 2 cut(s) 653, 828
BstDSI CCRYGG 3 cut(s) 117, 366, 732
BstF5I GGATG 3 cut(s) 333, 431, 792
BstFNI CGCG 4 cut(s) 20, 48, 152, 188
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 4 cut(s) 22, 48, 152, 251
BstKTI GATC 1 cut(s) 354
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 1 cut(s) 351
BstMCI CGRYCG 4 cut(s) 117, 183, 200, 214
BstMWI GCNNNNNNNGC 5 cut(s) 97, 119, 226, 407, 506
BstNI CCWGG 2 cut(s) 29, 305
BstSCI CCNGG 3 cut(s) 27, 63, 303
BstUI CGCG 4 cut(s) 20, 48, 152, 188
BstV1I GCAGC 2 cut(s) 216, 677
BstV2I GAAGAC 2 cut(s) 78, 515
BstZI CGGCCG 3 cut(s) 114, 180, 197
BsuRI GGCC 6 cut(s) 100, 116, 182, 199, 365, 699
BtgI CCRYGG 3 cut(s) 117, 366, 732
BtsCI GGATG 3 cut(s) 333, 431, 792
BtsIMutI CAGTG 1 cut(s) 393
CfoI GCGC 4 cut(s) 22, 48, 152, 251
Cfr10I RCCGGY 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 301
CseI GACGC 2 cut(s) 26, 194
Csp6I GTAC 4 cut(s) 52, 476, 543, 631
CviAII CATG 4 cut(s) 37, 349, 751, 783
CviQI GTAC 4 cut(s) 52, 476, 543, 631
DdeI CTNAG 2 cut(s) 653, 828
DinI GGCGCC 1 cut(s) 250
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
DraI TTTAAA 1 cut(s) 778
EaeI YGGCCR 5 cut(s) 114, 180, 197, 363, 697
EagI CGGCCG 3 cut(s) 114, 180, 197
EclXI CGGCCG 3 cut(s) 114, 180, 197
Eco147I AGGCCT 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 621
Eco47I GGWCC 1 cut(s) 301
Eco52I CGGCCG 3 cut(s) 114, 180, 197
EcoRII CCWGG 2 cut(s) 27, 303
EcoT38I GRGCYC 1 cut(s) 621
EgeI GGCGCC 1 cut(s) 250
EheI GGCGCC 1 cut(s) 250
FaeI CATG 4 cut(s) 40, 352, 754, 786
FaiI YATR 5 cut(s) 38, 350, 515, 752, 784
FaqI GGGAC 1 cut(s) 652
FatI CATG 4 cut(s) 36, 348, 750, 782
FauI CCCGC 1 cut(s) 753
FbaI TGATCA 1 cut(s) 351
Fnu4HI GCNGC 4 cut(s) 114, 197, 230, 666
FokI GGATG 3 cut(s) 340, 438, 799
FriOI GRGCYC 1 cut(s) 621
Fsp4HI GCNGC 4 cut(s) 114, 197, 230, 666
GlaI GCGC 4 cut(s) 21, 47, 151, 250
GluI GCNGC 4 cut(s) 114, 197, 230, 666
GsuI CTGGAG 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 252
HaeIII GGCC 6 cut(s) 100, 116, 182, 199, 365, 699
HapII CCGG 4 cut(s) 64, 179, 193, 387
HgaI GACGC 2 cut(s) 26, 194
HhaI GCGC 4 cut(s) 22, 48, 152, 251
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 4 cut(s) 40, 352, 754, 786
Hin6I GCGC 4 cut(s) 20, 46, 150, 249
HinP1I GCGC 4 cut(s) 20, 46, 150, 249
HinfI GANTC 6 cut(s) 254, 260, 266, 272, 390, 727
HpaII CCGG 4 cut(s) 64, 179, 193, 387
Hpy188I TCNGA 7 cut(s) 245, 259, 265, 271, 297, 495, 811
Hpy188III TCNNGA 2 cut(s) 94, 652
Hpy99I CGWCG 2 cut(s) 20, 188
HpyAV CCTTC 5 cut(s) 210, 651, 655, 677, 764
HpyCH4III ACNGT 4 cut(s) 313, 370, 397, 455
HpyF10VI GCNNNNNNNGC 5 cut(s) 97, 119, 226, 407, 506
HpyF3I CTNAG 2 cut(s) 653, 828
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 4 cut(s) 40, 352, 754, 786
HspAI GCGC 4 cut(s) 20, 46, 150, 249
KasI GGCGCC 1 cut(s) 248
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 96
Lsp1109I GCAGC 2 cut(s) 216, 677
LweI GCATC 1 cut(s) 416
MaeIII GTNAC 1 cut(s) 739
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 8 cut(s) 80, 83, 515, 640, 779, 798, 827, 830
MhlI GDGCHC 1 cut(s) 621
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 3 cut(s) 223, 489, 689
MluNI TGGCCA 1 cut(s) 365
Mly113I GGCGCC 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 702
Mox20I TGGCCA 1 cut(s) 365
MscI TGGCCA 1 cut(s) 365
MseI TTAA 4 cut(s) 222, 279, 431, 777
MslI CAYNNNNRTG 1 cut(s) 371
Msp20I TGGCCA 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 4 cut(s) 64, 179, 193, 387
MspR9I CCNGG 3 cut(s) 29, 65, 305
Mva1269I GAATGC 1 cut(s) 502
MvaI CCWGG 2 cut(s) 29, 305
MvnI CGCG 4 cut(s) 20, 48, 152, 188
MwoI GCNNNNNNNGC 5 cut(s) 97, 119, 226, 407, 506
NarI GGCGCC 1 cut(s) 249
NciI CCSGG 1 cut(s) 65
NdeII GATC 1 cut(s) 351
NlaIII CATG 4 cut(s) 40, 352, 754, 786
NlaIV GGNNCC 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 739
OliI CACNNNNGTG 1 cut(s) 371
PceI AGGCCT 1 cut(s) 100
PctI GAATGC 1 cut(s) 502
PfeI GAWTC 6 cut(s) 254, 260, 266, 272, 390, 727
PfoI TCCNGGA 1 cut(s) 63
PkrI GCNGC 4 cut(s) 115, 198, 231, 667
PluTI GGCGCC 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 27, 303
PspGI CCWGG 2 cut(s) 27, 303
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 1 cut(s) 301
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 4 cut(s) 53, 477, 544, 632
RsaNI GTAC 4 cut(s) 52, 476, 543, 631
RseI CAYNNNNRTG 1 cut(s) 371
SaqAI TTAA 4 cut(s) 222, 279, 431, 777
SatI GCNGC 4 cut(s) 114, 197, 230, 666
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 1 cut(s) 301
ScrFI CCNGG 3 cut(s) 29, 65, 305
SduI GDGCHC 1 cut(s) 621
SetI ASST 6 cut(s) 93, 164, 472, 572, 670, 829
SfaNI GCATC 1 cut(s) 416
SfoI GGCGCC 1 cut(s) 250
SinI GGWCC 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 371
Sse9I AATT 3 cut(s) 223, 489, 689
SseBI AGGCCT 1 cut(s) 100
SsiI CCGC 3 cut(s) 113, 196, 760
SspDI GGCGCC 1 cut(s) 248
StuI AGGCCT 1 cut(s) 100
StyD4I CCNGG 3 cut(s) 27, 63, 303
TaaI ACNGT 4 cut(s) 313, 370, 397, 455
TaqII GACCGA 1 cut(s) 228
TasI AATT 3 cut(s) 223, 489, 689
TauI GCSGC 2 cut(s) 116, 199
TfiI GAWTC 6 cut(s) 254, 260, 266, 272, 390, 727
Tru1I TTAA 4 cut(s) 222, 279, 431, 777
Tru9I TTAA 4 cut(s) 222, 279, 431, 777
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 1 cut(s) 739
TseI GCWGC 2 cut(s) 229, 665
Tsp45I GTSAC 1 cut(s) 739
TspDTI ATGAA 7 cut(s) 25, 115, 251, 328, 696, 828, 837
TspGWI ACGGA 2 cut(s) 314, 648
TspRI CASTG 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 301
XapI RAATTY 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.