Rh6DG457100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0015245
Physical Location & Seq
Reverse (-)
62737186 .. 62740531
3346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG457100.1

Sequence Viewer

Length: 834 bp
ATGGAGATAATCGGCGACGCGCTTCGCCAGGCGTTCATGCCCAAGCGCGAGTACGAGAGCCTCCGGGAAGAAGACAGAGCGTGGGGGAAGCTCCAGAGGCCTGTGTTGATGGCGTCCGTGGCTTTCATCTGCCTTTCAATCCTCGCCTGCGCGATTATCAGCTTGAACATTGTGTTTCCGGCCGACGCGAACCGGCGGCCGTTCTGCGGCGACCGGAGGCTTAATTCGCTGCCGATGAATGTCAGAGGCGGCGATTCCGATTCCGATTCGTTTAATGGTGCGTTTTATCTGACGGACCAGGAGACTGTGGATTACTATTGGATGGTGGTGTTCATTCCCTCCATGATCATTTTCTTGGCCACGGTGGTGTATCTTGTTGCGGGAATCACTGTCGCTTATTCTGCCCCAACAAGGAATGGATGCTTAATGGTAGTTGAAAATAACTACTGTGCTTCAAAAAGAGGTGGGGTACGATGTCTATCAATTCTGAATGCTGTCTTTGCTATCATATTTGGTCTTCTTGCCTTGTTTCTTGGTACGAGCCTCCTCACATTAGGGGGAAGCTACTGCTCTGTGCCTCTATTCTGGTGCTATGAGATTGGCACTTGGGGGCTCGTTTTTCTGTACGGAGGGACTGCCTTCTTCCTGAGAAGGAGAGCAGCTGTAATCCTTGATGAAGGGGAATTTGGTGGCCGAAACTTGGGGCTTGAAATGTTGGAGAATCCCGTTGAAGTGACACCAGACATGGAAAGGCGGGTTGAAGAAGGGTTTAAAACATGGATGGGGTCATCACTCCTATCTTCTGATGAAGAAGATGAACCTGAGAGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

30.88

Weight (kDa)

4.68

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32750
fragaria_vesca FvH4_2g35990
malus_domestica MD08G1117000.v1.1 MD15G1096600.v1.1
prunus_persica Prupe.1G451500_v2.0.a1
pyrus_communis pycom08g09750 pycom15g08870
rosa_chinensis RchiOBHm_Chr6g0305881
rosa_laevigata RLG00000010850
rosa_roxburghii Rroxscaffold_7G00162250
rosa_rugosa Rorug06G0344600
rosa_samantha Rh6AG456500 Rh6BG444800 Rh6CG470400 Rh6DG457100
rosa_wichuraiana Rw6G039820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 20, 48, 152, 188
AciI CCGC 5 cut(s) 196, 207, 249, 380, 754
AcoI YGGCCR 4 cut(s) 180, 197, 357, 691
AcsI RAATTY 1 cut(s) 683
AcyI GRCGYC 1 cut(s) 113
AfaI GTAC 4 cut(s) 53, 471, 538, 626
AfiI CCNNNNNNNGG 3 cut(s) 206, 411, 700
AgsI TTSAA 7 cut(s) 138, 166, 437, 456, 710, 731, 761
AjnI CCWGG 2 cut(s) 27, 297
AjuI GAANNNNNNNTTGG 2 cut(s) 669, 701
AleI CACNNNNGTG 1 cut(s) 365
AluBI AGCT 4 cut(s) 91, 162, 564, 662
AluI AGCT 4 cut(s) 91, 162, 564, 662
Alw26I GTCTC 1 cut(s) 296
AoxI GGCC 5 cut(s) 98, 180, 197, 357, 691
ApeKI GCWGC 2 cut(s) 229, 659
ApoI RAATTY 1 cut(s) 683
AspLEI GCGC 3 cut(s) 22, 48, 152
AspS9I GGNCC 1 cut(s) 295
AsuC2I CCSGG 1 cut(s) 65
AvaII GGWCC 1 cut(s) 295
BalI TGGCCA 1 cut(s) 359
BanII GRGCYC 1 cut(s) 615
BbsI GAAGAC 2 cut(s) 78, 509
BbvI GCAGC 2 cut(s) 216, 671
BccI CCATC 3 cut(s) 103, 316, 775
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 2 cut(s) 29, 299
BclI TGATCA 1 cut(s) 345
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 1 cut(s) 296
BisI GCNGC 5 cut(s) 197, 208, 230, 250, 660
BlsI GCNGC 5 cut(s) 198, 209, 231, 251, 661
Bme1390I CCNGG 3 cut(s) 29, 65, 299
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmrFI CCNGG 3 cut(s) 29, 65, 299
BmsI GCATC 1 cut(s) 410
BpiI GAAGAC 2 cut(s) 78, 509
BpmI CTGGAG 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 65
BsaBI GATNNNNATC 1 cut(s) 478
BsaHI GRCGYC 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 117, 360
BsaWI WCCGGW 1 cut(s) 213
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 411, 700
Bse118I RCCGGY 1 cut(s) 192
Bse8I GATNNNNATC 1 cut(s) 478
BseBI CCWGG 2 cut(s) 29, 299
BseDI CCNNGG 2 cut(s) 117, 360
BseGI GGATG 3 cut(s) 327, 425, 786
BseJI GATNNNNATC 1 cut(s) 478
BseLI CCNNNNNNNGG 3 cut(s) 206, 411, 700
BseMII CTCAG 2 cut(s) 638, 813
BseRI GAGGAG 1 cut(s) 536
BseX3I CGGCCG 2 cut(s) 180, 197
BseXI GCAGC 2 cut(s) 216, 671
Bsh1236I CGCG 4 cut(s) 20, 48, 152, 188
Bsh1285I CGRYCG 3 cut(s) 183, 200, 214
BshFI GGCC 5 cut(s) 100, 182, 199, 359, 693
BsiEI CGRYCG 3 cut(s) 183, 200, 214
BsiSI CCGG 4 cut(s) 64, 179, 193, 214
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 3 cut(s) 206, 411, 700
BsmAI GTCTC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 646
BsmI GAATGC 1 cut(s) 496
BsnI GGCC 5 cut(s) 100, 182, 199, 359, 693
Bsp1286I GDGCHC 1 cut(s) 615
Bsp143I GATC 1 cut(s) 345
BspACI CCGC 5 cut(s) 196, 207, 249, 380, 754
BspANI GGCC 5 cut(s) 100, 182, 199, 359, 693
BspCNI CTCAG 2 cut(s) 639, 814
BspFNI CGCG 4 cut(s) 20, 48, 152, 188
BsrFI RCCGGY 1 cut(s) 192
BssAI RCCGGY 1 cut(s) 192
BssECI CCNNGG 2 cut(s) 117, 360
BssMI GATC 1 cut(s) 345
BssNI GRCGYC 1 cut(s) 113
Bst2UI CCWGG 2 cut(s) 29, 299
Bst4CI ACNGT 4 cut(s) 307, 364, 391, 449
BstACI GRCGYC 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 647, 822
BstDSI CCRYGG 2 cut(s) 117, 360
BstF5I GGATG 3 cut(s) 327, 425, 786
BstFNI CGCG 4 cut(s) 20, 48, 152, 188
BstHHI GCGC 3 cut(s) 22, 48, 152
BstKTI GATC 1 cut(s) 348
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 1 cut(s) 345
BstMCI CGRYCG 3 cut(s) 183, 200, 214
BstMWI GCNNNNNNNGC 5 cut(s) 97, 119, 226, 401, 500
BstNI CCWGG 2 cut(s) 29, 299
BstSCI CCNGG 3 cut(s) 27, 63, 297
BstUI CGCG 4 cut(s) 20, 48, 152, 188
BstV1I GCAGC 2 cut(s) 216, 671
BstV2I GAAGAC 2 cut(s) 78, 509
BstZI CGGCCG 2 cut(s) 180, 197
BsuRI GGCC 5 cut(s) 100, 182, 199, 359, 693
BtgI CCRYGG 2 cut(s) 117, 360
BtsCI GGATG 3 cut(s) 327, 425, 786
BtsIMutI CAGTG 1 cut(s) 387
Cac8I GCNNGC 1 cut(s) 148
CfoI GCGC 3 cut(s) 22, 48, 152
Cfr10I RCCGGY 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 295
CseI GACGC 3 cut(s) 26, 102, 194
Csp6I GTAC 4 cut(s) 52, 470, 537, 625
CviAII CATG 4 cut(s) 37, 343, 745, 777
CviQI GTAC 4 cut(s) 52, 470, 537, 625
DdeI CTNAG 2 cut(s) 647, 822
DpnI GATC 1 cut(s) 347
DpnII GATC 1 cut(s) 345
DraI TTTAAA 1 cut(s) 772
EaeI YGGCCR 4 cut(s) 180, 197, 357, 691
EagI CGGCCG 2 cut(s) 180, 197
EclXI CGGCCG 2 cut(s) 180, 197
Eco147I AGGCCT 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 615
Eco47I GGWCC 1 cut(s) 295
Eco52I CGGCCG 2 cut(s) 180, 197
EcoRII CCWGG 2 cut(s) 27, 297
EcoT38I GRGCYC 1 cut(s) 615
FaeI CATG 4 cut(s) 40, 346, 748, 780
FaiI YATR 6 cut(s) 38, 344, 509, 594, 746, 778
FaqI GGGAC 1 cut(s) 646
FatI CATG 4 cut(s) 36, 342, 744, 776
FauI CCCGC 2 cut(s) 373, 747
FbaI TGATCA 1 cut(s) 345
Fnu4HI GCNGC 5 cut(s) 197, 208, 230, 250, 660
FokI GGATG 3 cut(s) 334, 432, 793
FriOI GRGCYC 1 cut(s) 615
Fsp4HI GCNGC 5 cut(s) 197, 208, 230, 250, 660
GlaI GCGC 3 cut(s) 21, 47, 151
GluI GCNGC 5 cut(s) 197, 208, 230, 250, 660
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 5 cut(s) 100, 182, 199, 359, 693
HapII CCGG 4 cut(s) 64, 179, 193, 214
HgaI GACGC 3 cut(s) 26, 102, 194
HhaI GCGC 3 cut(s) 22, 48, 152
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 4 cut(s) 40, 346, 748, 780
Hin6I GCGC 3 cut(s) 20, 46, 150
HinP1I GCGC 3 cut(s) 20, 46, 150
HinfI GANTC 5 cut(s) 254, 260, 266, 384, 721
HpaII CCGG 4 cut(s) 64, 179, 193, 214
Hpy188I TCNGA 6 cut(s) 245, 259, 265, 291, 489, 805
Hpy188III TCNNGA 2 cut(s) 94, 646
Hpy99I CGWCG 2 cut(s) 20, 188
HpyAV CCTTC 4 cut(s) 645, 649, 671, 758
HpyCH4III ACNGT 4 cut(s) 307, 364, 391, 449
HpyF10VI GCNNNNNNNGC 5 cut(s) 97, 119, 226, 401, 500
HpyF3I CTNAG 2 cut(s) 647, 822
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 4 cut(s) 40, 346, 748, 780
HspAI GCGC 3 cut(s) 20, 46, 150
Ksp22I TGATCA 1 cut(s) 345
Kzo9I GATC 1 cut(s) 345
LmnI GCTCC 1 cut(s) 96
Lsp1109I GCAGC 2 cut(s) 216, 671
LweI GCATC 1 cut(s) 410
MaeIII GTNAC 1 cut(s) 733
MalI GATC 1 cut(s) 347
MboI GATC 1 cut(s) 345
MboII GAAGA 8 cut(s) 80, 83, 509, 634, 773, 792, 821, 824
MhlI GDGCHC 1 cut(s) 615
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 3 cut(s) 223, 483, 683
MluNI TGGCCA 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 696
Mox20I TGGCCA 1 cut(s) 359
MscI TGGCCA 1 cut(s) 359
MseI TTAA 4 cut(s) 222, 273, 425, 771
MslI CAYNNNNRTG 1 cut(s) 365
Msp20I TGGCCA 1 cut(s) 359
MspA1I CMGCKG 1 cut(s) 662
MspI CCGG 4 cut(s) 64, 179, 193, 214
MspR9I CCNGG 3 cut(s) 29, 65, 299
Mva1269I GAATGC 1 cut(s) 496
MvaI CCWGG 2 cut(s) 29, 299
MvnI CGCG 4 cut(s) 20, 48, 152, 188
MwoI GCNNNNNNNGC 5 cut(s) 97, 119, 226, 401, 500
NciI CCSGG 1 cut(s) 65
NdeII GATC 1 cut(s) 345
NlaIII CATG 4 cut(s) 40, 346, 748, 780
NmuCI GTSAC 1 cut(s) 733
OliI CACNNNNGTG 1 cut(s) 365
PceI AGGCCT 1 cut(s) 100
PctI GAATGC 1 cut(s) 496
PfeI GAWTC 5 cut(s) 254, 260, 266, 384, 721
PfoI TCCNGGA 1 cut(s) 63
PkrI GCNGC 5 cut(s) 198, 209, 231, 251, 661
Psp6I CCWGG 2 cut(s) 27, 297
PspGI CCWGG 2 cut(s) 27, 297
PspPI GGNCC 1 cut(s) 295
PvuII CAGCTG 1 cut(s) 662
RsaI GTAC 4 cut(s) 53, 471, 538, 626
RsaNI GTAC 4 cut(s) 52, 470, 537, 625
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 4 cut(s) 222, 273, 425, 771
SatI GCNGC 5 cut(s) 197, 208, 230, 250, 660
Sau3AI GATC 1 cut(s) 345
Sau96I GGNCC 1 cut(s) 295
ScrFI CCNGG 3 cut(s) 29, 65, 299
SduI GDGCHC 1 cut(s) 615
SetI ASST 6 cut(s) 93, 164, 466, 566, 664, 823
SfaNI GCATC 1 cut(s) 410
SinI GGWCC 1 cut(s) 295
SmiMI CAYNNNNRTG 1 cut(s) 365
Sse9I AATT 3 cut(s) 223, 483, 683
SseBI AGGCCT 1 cut(s) 100
SsiI CCGC 5 cut(s) 196, 207, 249, 380, 754
StuI AGGCCT 1 cut(s) 100
StyD4I CCNGG 3 cut(s) 27, 63, 297
TaaI ACNGT 4 cut(s) 307, 364, 391, 449
TasI AATT 3 cut(s) 223, 483, 683
TauI GCSGC 3 cut(s) 199, 210, 252
TfiI GAWTC 5 cut(s) 254, 260, 266, 384, 721
Tru1I TTAA 4 cut(s) 222, 273, 425, 771
Tru9I TTAA 4 cut(s) 222, 273, 425, 771
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 1 cut(s) 733
TseI GCWGC 2 cut(s) 229, 659
Tsp45I GTSAC 1 cut(s) 733
TspDTI ATGAA 7 cut(s) 25, 115, 251, 322, 690, 822, 831
TspGWI ACGGA 3 cut(s) 106, 308, 642
TspRI CASTG 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.