pycom08g09750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0015245
Physical Location & Seq
Forward (+)
8118930 .. 8121237
2308 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g09750.2

Sequence Viewer

Length: 825 bp
ATGGCGATAATCGGCGACGCGCTTCGCCAGGCGTTCATGCCAAAGCGCGAGTACGAGAGCCTCCGGGAGGAAGACAGGGCGTGGGAGAAGCTCCAGAGACCGCTGTTAATGGCTTCCGTGGCTTTGGTCTGCCTCGTTGTTGTTGTGTGCACGGTTATCAGCTTGAATATTGTGTTTCCGGCCGACCCGACTAAGCGACCGTTCTGTGGCGACCGGAGGCTTAATTCATTGCCGATGAATGTGAGAGGCGGGGATTCCGATCTGTTTCCCGGAGCTTTTTATCTTACAGATCAGGAGATTGCGGATTACTATTGGATGGTTGTGTTCATTCCCTCCTTGATCATTTTCTTGGCTACTTTCGTGTACCTTGTCGCGGGAATCATTGTTGCTTATTCTGCTCCAACACGACATGGATGCTTAAGGGTTGTTGAAAATAACTATTGTGCTTCAAAAAGAGGTGGGGTTCGATGTCTATCGATTCTGAATGCCGTCTTTGCTGTCATATTTGGTCTACTTGCATTGTTTCTTGGTTCAAGCCTCCTCACACAAGGAAGCTCCTGCTCTGTGCCCCTTTTCTGGTGCTATGAGGTTGGTTCTTGGGGAATGGTTATTTTATATGGAGGAACCGCCTTTTTTCTAAGAAGGAGAGCAGCGGCAATCCTTGATGAGGGAGACTTTGGTGGTCGAAACCTGGGGCTAGAAATGTTGGAGAATCCTGTAGAAGTTTCACCAGAGGTGGAAAGGCGGGTTAACGAAGGGTTTAAAGCATGGATGGGGTCATCACTCCTATCGTCTGATGAAGAAGATGAACCTGGCAGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

30.37

Weight (kDa)

5.01

Isoelectric Point (pI)

56.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32750
fragaria_vesca FvH4_2g35990
malus_domestica MD08G1117000.v1.1 MD15G1096600.v1.1
prunus_persica Prupe.1G451500_v2.0.a1
pyrus_communis pycom08g09750 pycom15g08870
rosa_chinensis RchiOBHm_Chr6g0305881
rosa_laevigata RLG00000010850
rosa_roxburghii Rroxscaffold_7G00162250
rosa_rugosa Rorug06G0344600
rosa_samantha Rh6AG456500 Rh6BG444800 Rh6CG470400 Rh6DG457100
rosa_wichuraiana Rw6G039820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 511
AccII CGCG 3 cut(s) 20, 48, 374
AciI CCGC 7 cut(s) 101, 249, 302, 374, 627, 653, 745
AcoI YGGCCR 1 cut(s) 180
AfaI GTAC 2 cut(s) 53, 365
AfiI CCNNNNNNNGG 5 cut(s) 67, 206, 373, 576, 667
AflII CTTAAG 1 cut(s) 418
AgsI TTSAA 4 cut(s) 166, 431, 450, 534
AjnI CCWGG 3 cut(s) 27, 690, 811
AluBI AGCT 4 cut(s) 91, 162, 275, 555
AluI AGCT 4 cut(s) 91, 162, 275, 555
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 2 cut(s) 91, 666
Alw44I GTGCAC 1 cut(s) 148
AoxI GGCC 1 cut(s) 180
ApaLI GTGCAC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 650
AspLEI GCGC 2 cut(s) 22, 48
AsuC2I CCSGG 2 cut(s) 65, 270
AsuHPI GGTGA 1 cut(s) 720
BaeGI GKGCMC 2 cut(s) 152, 570
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 662
BccI CCATC 2 cut(s) 310, 766
BceAI ACGGC 1 cut(s) 473
BcgI CGANNNNNNTGC 2 cut(s) 396, 430
BciT130I CCWGG 3 cut(s) 29, 692, 813
BclI TGATCA 1 cut(s) 339
BcnI CCSGG 2 cut(s) 65, 270
BcoDI GTCTC 2 cut(s) 91, 666
BfaI CTAG 1 cut(s) 698
BfmI CTRYAG 1 cut(s) 717
BfrI CTTAAG 1 cut(s) 418
BisI GCNGC 2 cut(s) 651, 654
BlsI GCNGC 2 cut(s) 652, 655
Bme1390I CCNGG 5 cut(s) 29, 65, 270, 692, 813
BmiI GGNNCC 1 cut(s) 625
BmrFI CCNGG 5 cut(s) 29, 65, 270, 692, 813
BmsI GCATC 1 cut(s) 404
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 77
BpuMI CCSGG 2 cut(s) 65, 270
Bsa29I ATCGAT 1 cut(s) 476
BsaBI GATNNNNATC 2 cut(s) 258, 472
BsaI GGTCTC 1 cut(s) 91
BsaJI CCNNGG 2 cut(s) 117, 691
BsaWI WCCGGW 1 cut(s) 213
Bsc4I CCNNNNNNNGG 5 cut(s) 67, 206, 373, 576, 667
Bse3DI GCAATG 1 cut(s) 227
Bse8I GATNNNNATC 2 cut(s) 258, 472
BseBI CCWGG 3 cut(s) 29, 692, 813
BseCI ATCGAT 1 cut(s) 476
BseDI CCNNGG 2 cut(s) 117, 691
BseGI GGATG 3 cut(s) 321, 419, 777
BseJI GATNNNNATC 2 cut(s) 258, 472
BseLI CCNNNNNNNGG 5 cut(s) 67, 206, 373, 576, 667
BseMI GCAATG 1 cut(s) 227
BseRI GAGGAG 1 cut(s) 530
BseSI GKGCMC 2 cut(s) 152, 570
BseX3I CGGCCG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 662
Bsh1236I CGCG 3 cut(s) 20, 48, 374
Bsh1285I CGRYCG 3 cut(s) 183, 200, 214
BshFI GGCC 1 cut(s) 182
BshVI ATCGAT 1 cut(s) 476
BsiEI CGRYCG 3 cut(s) 183, 200, 214
BsiHKAI GWGCWC 1 cut(s) 152
BsiSI CCGG 4 cut(s) 64, 179, 214, 270
BslI CCNNNNNNNGG 5 cut(s) 67, 206, 373, 576, 667
BsmAI GTCTC 2 cut(s) 91, 666
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 91
Bsp1286I GDGCHC 2 cut(s) 152, 570
Bsp143I GATC 3 cut(s) 259, 289, 339
BspACI CCGC 7 cut(s) 101, 249, 302, 374, 627, 653, 745
BspANI GGCC 1 cut(s) 182
BspDI ATCGAT 1 cut(s) 476
BspFNI CGCG 3 cut(s) 20, 48, 374
BspLI GGNNCC 1 cut(s) 625
BspTI CTTAAG 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 117, 691
BssMI GATC 3 cut(s) 259, 289, 339
Bst2UI CCWGG 3 cut(s) 29, 692, 813
Bst4CI ACNGT 2 cut(s) 154, 201
BstAFI CTTAAG 1 cut(s) 418
BstDEI CTNAG 2 cut(s) 192, 638
BstDSI CCRYGG 1 cut(s) 117
BstENI CCTNNNNNAGG 2 cut(s) 65, 665
BstF5I GGATG 3 cut(s) 321, 419, 777
BstFNI CGCG 3 cut(s) 20, 48, 374
BstHHI GCGC 2 cut(s) 22, 48
BstKTI GATC 3 cut(s) 262, 292, 342
BstMAI GTCTC 2 cut(s) 91, 666
BstMBI GATC 3 cut(s) 259, 289, 339
BstMCI CGRYCG 3 cut(s) 183, 200, 214
BstMWI GCNNNNNNNGC 3 cut(s) 119, 395, 494
BstNI CCWGG 3 cut(s) 29, 692, 813
BstSCI CCNGG 5 cut(s) 27, 63, 268, 690, 811
BstSFI CTRYAG 1 cut(s) 717
BstSLI GKGCMC 2 cut(s) 152, 570
BstUI CGCG 3 cut(s) 20, 48, 374
BstV1I GCAGC 1 cut(s) 662
BstV2I GAAGAC 1 cut(s) 78
BstZI CGGCCG 1 cut(s) 180
Bsu15I ATCGAT 1 cut(s) 476
BsuRI GGCC 1 cut(s) 182
BsuTUI ATCGAT 1 cut(s) 476
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 3 cut(s) 321, 419, 777
CfoI GCGC 2 cut(s) 22, 48
ClaI ATCGAT 1 cut(s) 476
CseI GACGC 1 cut(s) 26
Csp6I GTAC 2 cut(s) 52, 364
CviAII CATG 3 cut(s) 37, 410, 768
CviQI GTAC 2 cut(s) 52, 364
DdeI CTNAG 2 cut(s) 192, 638
DpnI GATC 3 cut(s) 261, 291, 341
DpnII GATC 3 cut(s) 259, 289, 339
DraI TTTAAA 1 cut(s) 763
EaeI YGGCCR 1 cut(s) 180
EagI CGGCCG 1 cut(s) 180
EclXI CGGCCG 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 91
Eco52I CGGCCG 1 cut(s) 180
EcoNI CCTNNNNNAGG 2 cut(s) 65, 665
EcoRII CCWGG 3 cut(s) 27, 690, 811
FaeI CATG 3 cut(s) 40, 413, 771
FaiI YATR 7 cut(s) 38, 411, 503, 585, 616, 618, 769
FatI CATG 3 cut(s) 36, 409, 767
FauI CCCGC 3 cut(s) 242, 367, 738
FbaI TGATCA 1 cut(s) 339
FblI GTMKAC 1 cut(s) 511
Fnu4HI GCNGC 2 cut(s) 651, 654
FokI GGATG 3 cut(s) 328, 426, 784
Fsp4HI GCNGC 2 cut(s) 651, 654
FspBI CTAG 1 cut(s) 698
GlaI GCGC 2 cut(s) 21, 47
GluI GCNGC 2 cut(s) 651, 654
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 1 cut(s) 182
HapII CCGG 4 cut(s) 64, 179, 214, 270
HgaI GACGC 1 cut(s) 26
HhaI GCGC 2 cut(s) 22, 48
Hin1II CATG 3 cut(s) 40, 413, 771
Hin6I GCGC 2 cut(s) 20, 46
HinP1I GCGC 2 cut(s) 20, 46
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HinfI GANTC 4 cut(s) 254, 378, 478, 712
HpaI GTTAAC 1 cut(s) 751
HpaII CCGG 4 cut(s) 64, 179, 214, 270
HphI GGTGA 1 cut(s) 720
Hpy166II GTNNAC 4 cut(s) 150, 364, 512, 751
Hpy188I TCNGA 3 cut(s) 259, 483, 796
Hpy188III TCNNGA 2 cut(s) 94, 293
Hpy8I GTNNAC 4 cut(s) 150, 364, 512, 751
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 636, 749
HpyCH4III ACNGT 2 cut(s) 154, 201
HpyCH4V TGCA 2 cut(s) 150, 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 395, 494
HpyF3I CTNAG 2 cut(s) 192, 638
Hsp92II CATG 3 cut(s) 40, 413, 771
HspAI GCGC 2 cut(s) 20, 46
Ksp22I TGATCA 1 cut(s) 339
KspAI GTTAAC 1 cut(s) 751
Kzo9I GATC 3 cut(s) 259, 289, 339
LmnI GCTCC 4 cut(s) 96, 272, 403, 560
Lsp1109I GCAGC 1 cut(s) 662
LweI GCATC 1 cut(s) 404
MaeI CTAG 1 cut(s) 698
MalI GATC 3 cut(s) 261, 291, 341
MboI GATC 3 cut(s) 259, 289, 339
MboII GAAGA 3 cut(s) 83, 812, 815
MhlI GDGCHC 2 cut(s) 152, 570
MluCI AATT 1 cut(s) 223
MmeI TCCRAC 2 cut(s) 425, 687
MseI TTAA 6 cut(s) 107, 222, 419, 750, 762, 823
MspA1I CMGCKG 2 cut(s) 103, 653
MspCI CTTAAG 1 cut(s) 418
MspI CCGG 4 cut(s) 64, 179, 214, 270
MspR9I CCNGG 5 cut(s) 29, 65, 270, 692, 813
Mva1269I GAATGC 1 cut(s) 490
MvaI CCWGG 3 cut(s) 29, 692, 813
MvnI CGCG 3 cut(s) 20, 48, 374
MwoI GCNNNNNNNGC 3 cut(s) 119, 395, 494
NciI CCSGG 2 cut(s) 65, 270
NdeII GATC 3 cut(s) 259, 289, 339
NlaIII CATG 3 cut(s) 40, 413, 771
NlaIV GGNNCC 1 cut(s) 625
PctI GAATGC 1 cut(s) 490
PfeI GAWTC 4 cut(s) 254, 378, 478, 712
PfoI TCCNGGA 2 cut(s) 63, 268
PkrI GCNGC 2 cut(s) 652, 655
Psp6I CCWGG 3 cut(s) 27, 690, 811
PspGI CCWGG 3 cut(s) 27, 690, 811
PspN4I GGNNCC 1 cut(s) 625
RsaI GTAC 2 cut(s) 53, 365
RsaNI GTAC 2 cut(s) 52, 364
SaqAI TTAA 6 cut(s) 107, 222, 419, 750, 762, 823
SatI GCNGC 2 cut(s) 651, 654
Sau3AI GATC 3 cut(s) 259, 289, 339
ScrFI CCNGG 5 cut(s) 29, 65, 270, 692, 813
SduI GDGCHC 2 cut(s) 152, 570
SfaNI GCATC 1 cut(s) 404
SfcI CTRYAG 1 cut(s) 717
SmlI CTYRAG 1 cut(s) 418
SmoI CTYRAG 1 cut(s) 418
Sse9I AATT 1 cut(s) 223
SsiI CCGC 7 cut(s) 101, 249, 302, 374, 627, 653, 745
SspI AATATT 1 cut(s) 169
SspMI CTAG 1 cut(s) 698
StyD4I CCNGG 5 cut(s) 27, 63, 268, 690, 811
TaaI ACNGT 2 cut(s) 154, 201
TaqI TCGA 3 cut(s) 466, 476, 685
TasI AATT 1 cut(s) 223
TauI GCSGC 1 cut(s) 656
TfiI GAWTC 4 cut(s) 254, 378, 478, 712
Tru1I TTAA 6 cut(s) 107, 222, 419, 750, 762, 823
Tru9I TTAA 6 cut(s) 107, 222, 419, 750, 762, 823
TseI GCWGC 1 cut(s) 650
TspDTI ATGAA 6 cut(s) 25, 216, 251, 316, 813, 822
TspGWI ACGGA 1 cut(s) 106
Vha464I CTTAAG 1 cut(s) 418
VneI GTGCAC 1 cut(s) 148
XagI CCTNNNNNAGG 2 cut(s) 65, 665
XmiI GTMKAC 1 cut(s) 511
XspI CTAG 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.