FvH4_2g35990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015245
Physical Location & Seq
Forward (+)
26449721 .. 26452762
3042 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35990.t1

Sequence Viewer

Length: 831 bp
ATGGAGATAATCGGCGACGCGCTTCGCCAGGCGTTCATGCCCAAGCGCGAGTACGAGTGCCTCCGGGAAGAAGACCGAGCCTGGGGGAAGCTCCAGAGGCCGATGTTGATGGCGTCCGTGGCTTTCATCTGCCTTGCGATCTTCGTCTGCGCGGTTATCAGCTTGAACATTGTGTTTCCGGCCGACGCGTCCCGGCGGCCGTTGTGCGGCGACGACCGGAGGCTTAATTCGCTGCCGATGAATGTGAGAGGCGGCGATTCCGATTCGTTTAGTGGTGCGTTTTCTCTGACGGACCAGGAGACTGTGGATTACTATTGGATGGTGGTGTTCATTCCCTCCATGATCATTTTCTTGGCCACGGTGGTGTATCTCGTCGCCGGAATCACAGTCGCGTATTCTGCCCCTGCAAGGAATGGATGCTTAATGGTAGTTGAGAATAATTACTGTGCTTCAAAAAGAGGTGGGGTACGATGTCTATCAATTCTGAATGCTGTCTTTGCTATCATATTTGGTCTTCTTGCCTTGTTTCTTGGTACAACTCTTCTCACATTAGGGGGAAGCTACTGCTCTGTGCCTCTATTCTGGTGCTATGAGATTGCCATTTGGGGGCTTGCTATTCTGTATGGAGGGACTGCCTTCTTCCTAAGAAGGAGAGCAGCTGTAATCCTTGACGAAGGGGAATTTGGTAGCCGAAACTTGGGGCTTGAAATGTTAGAGAGTCCAGTGGAAGTGACACCAGACGTGGAAAGGCGGGTTGATGAAGGGTTTAAAACATGGATGGGCTCCTCACTCTTATCATCCGATGAAGAAGATGAACCTGACAATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

30.63

Weight (kDa)

4.65

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32750
fragaria_vesca FvH4_2g35990
malus_domestica MD08G1117000.v1.1 MD15G1096600.v1.1
prunus_persica Prupe.1G451500_v2.0.a1
pyrus_communis pycom08g09750 pycom15g08870
rosa_chinensis RchiOBHm_Chr6g0305881
rosa_laevigata RLG00000010850
rosa_roxburghii Rroxscaffold_7G00162250
rosa_rugosa Rorug06G0344600
rosa_samantha Rh6AG456500 Rh6BG444800 Rh6CG470400 Rh6DG457100
rosa_wichuraiana Rw6G039820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 20, 48, 152, 188, 392
AciI CCGC 5 cut(s) 152, 196, 207, 252, 751
AcoI YGGCCR 3 cut(s) 180, 197, 354
AcsI RAATTY 1 cut(s) 680
AcyI GRCGYC 1 cut(s) 113
AfaI GTAC 3 cut(s) 53, 468, 535
AfiI CCNNNNNNNGG 5 cut(s) 82, 206, 408, 606, 697
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 3 cut(s) 166, 453, 707
AjiI CACGTC 1 cut(s) 742
AjnI CCWGG 3 cut(s) 27, 80, 294
AjuI GAANNNNNNNTTGG 2 cut(s) 666, 698
AleI CACNNNNGTG 1 cut(s) 362
AluBI AGCT 4 cut(s) 91, 162, 561, 659
AluI AGCT 4 cut(s) 91, 162, 561, 659
Alw26I GTCTC 1 cut(s) 293
AoxI GGCC 4 cut(s) 98, 180, 197, 354
ApeKI GCWGC 2 cut(s) 232, 656
ApoI RAATTY 1 cut(s) 680
AspLEI GCGC 3 cut(s) 22, 48, 152
AspS9I GGNCC 1 cut(s) 292
AsuC2I CCSGG 2 cut(s) 65, 193
AvaII GGWCC 1 cut(s) 292
BalI TGGCCA 1 cut(s) 356
BanII GRGCYC 1 cut(s) 785
BbsI GAAGAC 2 cut(s) 78, 506
BbvI GCAGC 2 cut(s) 219, 668
BccI CCATC 3 cut(s) 103, 313, 772
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 3 cut(s) 29, 82, 296
BclI TGATCA 1 cut(s) 342
BcnI CCSGG 2 cut(s) 65, 193
BcoDI GTCTC 1 cut(s) 293
BisI GCNGC 5 cut(s) 197, 208, 233, 253, 657
BlsI GCNGC 5 cut(s) 198, 209, 234, 254, 658
Bme1390I CCNGG 5 cut(s) 29, 65, 82, 193, 296
Bme18I GGWCC 1 cut(s) 292
BmgBI CACGTC 1 cut(s) 742
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 1 cut(s) 784
BmrFI CCNGG 5 cut(s) 29, 65, 82, 193, 296
BmsI GCATC 1 cut(s) 407
BpiI GAAGAC 2 cut(s) 78, 506
BpmI CTGGAG 1 cut(s) 77
BpuMI CCSGG 2 cut(s) 65, 193
BsaBI GATNNNNATC 1 cut(s) 475
BsaHI GRCGYC 1 cut(s) 113
BsaJI CCNNGG 3 cut(s) 81, 117, 357
BsaWI WCCGGW 1 cut(s) 216
Bsc4I CCNNNNNNNGG 5 cut(s) 82, 206, 408, 606, 697
Bse1I ACTGG 1 cut(s) 722
Bse8I GATNNNNATC 1 cut(s) 475
BseBI CCWGG 3 cut(s) 29, 82, 296
BseDI CCNNGG 3 cut(s) 81, 117, 357
BseGI GGATG 4 cut(s) 324, 422, 783, 797
BseJI GATNNNNATC 1 cut(s) 475
BseLI CCNNNNNNNGG 5 cut(s) 82, 206, 408, 606, 697
BseNI ACTGG 1 cut(s) 722
BseRI GAGGAG 1 cut(s) 775
BseX3I CGGCCG 2 cut(s) 180, 197
BseXI GCAGC 2 cut(s) 219, 668
Bsh1236I CGCG 5 cut(s) 20, 48, 152, 188, 392
Bsh1285I CGRYCG 3 cut(s) 183, 200, 217
BshFI GGCC 4 cut(s) 100, 182, 199, 356
BsiEI CGRYCG 3 cut(s) 183, 200, 217
BsiSI CCGG 5 cut(s) 64, 179, 193, 217, 378
BslFI GGGAC 2 cut(s) 175, 643
BslI CCNNNNNNNGG 5 cut(s) 82, 206, 408, 606, 697
BsmAI GTCTC 1 cut(s) 293
BsmFI GGGAC 2 cut(s) 175, 643
BsmI GAATGC 1 cut(s) 493
BsnI GGCC 4 cut(s) 100, 182, 199, 356
Bsp1286I GDGCHC 1 cut(s) 785
Bsp143I GATC 2 cut(s) 138, 342
BspACI CCGC 5 cut(s) 152, 196, 207, 252, 751
BspANI GGCC 4 cut(s) 100, 182, 199, 356
BspFNI CGCG 5 cut(s) 20, 48, 152, 188, 392
BspLI GGNNCC 1 cut(s) 784
BsrI ACTGG 1 cut(s) 722
BssECI CCNNGG 3 cut(s) 81, 117, 357
BssMI GATC 2 cut(s) 138, 342
BssNI GRCGYC 1 cut(s) 113
Bst2UI CCWGG 3 cut(s) 29, 82, 296
Bst4CI ACNGT 4 cut(s) 304, 361, 388, 446
Bst6I CTCTTC 1 cut(s) 546
BstACI GRCGYC 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 612
BstDEI CTNAG 1 cut(s) 644
BstDSI CCRYGG 2 cut(s) 117, 357
BstF5I GGATG 4 cut(s) 324, 422, 783, 797
BstFNI CGCG 5 cut(s) 20, 48, 152, 188, 392
BstHHI GCGC 3 cut(s) 22, 48, 152
BstKTI GATC 2 cut(s) 141, 345
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 2 cut(s) 138, 342
BstMCI CGRYCG 3 cut(s) 183, 200, 217
BstMWI GCNNNNNNNGC 5 cut(s) 97, 119, 229, 398, 497
BstNI CCWGG 3 cut(s) 29, 82, 296
BstSCI CCNGG 5 cut(s) 27, 63, 80, 191, 294
BstUI CGCG 5 cut(s) 20, 48, 152, 188, 392
BstV1I GCAGC 2 cut(s) 219, 668
BstV2I GAAGAC 2 cut(s) 78, 506
BstZI CGGCCG 2 cut(s) 180, 197
BsuRI GGCC 4 cut(s) 100, 182, 199, 356
BtgI CCRYGG 2 cut(s) 117, 357
BtrI CACGTC 1 cut(s) 742
BtsCI GGATG 4 cut(s) 324, 422, 783, 797
BtsIMutI CAGTG 1 cut(s) 729
Cac8I GCNNGC 1 cut(s) 612
CfoI GCGC 3 cut(s) 22, 48, 152
Cfr13I GGNCC 1 cut(s) 292
CseI GACGC 4 cut(s) 26, 102, 177, 194
Csp6I GTAC 3 cut(s) 52, 467, 534
CviAII CATG 3 cut(s) 37, 340, 774
CviQI GTAC 3 cut(s) 52, 467, 534
DdeI CTNAG 1 cut(s) 644
DpnI GATC 2 cut(s) 140, 344
DpnII GATC 2 cut(s) 138, 342
DraI TTTAAA 1 cut(s) 769
EaeI YGGCCR 3 cut(s) 180, 197, 354
EagI CGGCCG 2 cut(s) 180, 197
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
EclXI CGGCCG 2 cut(s) 180, 197
Eco24I GRGCYC 1 cut(s) 785
Eco47I GGWCC 1 cut(s) 292
Eco52I CGGCCG 2 cut(s) 180, 197
EcoRII CCWGG 3 cut(s) 27, 80, 294
EcoT38I GRGCYC 1 cut(s) 785
FaeI CATG 3 cut(s) 40, 343, 777
FaiI YATR 6 cut(s) 38, 341, 506, 591, 624, 775
FaqI GGGAC 2 cut(s) 175, 643
FatI CATG 3 cut(s) 36, 339, 773
FauI CCCGC 1 cut(s) 744
FbaI TGATCA 1 cut(s) 342
Fnu4HI GCNGC 5 cut(s) 197, 208, 233, 253, 657
FokI GGATG 4 cut(s) 331, 429, 784, 790
FriOI GRGCYC 1 cut(s) 785
Fsp4HI GCNGC 5 cut(s) 197, 208, 233, 253, 657
GlaI GCGC 3 cut(s) 21, 47, 151
GluI GCNGC 5 cut(s) 197, 208, 233, 253, 657
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 4 cut(s) 100, 182, 199, 356
HapII CCGG 5 cut(s) 64, 179, 193, 217, 378
HgaI GACGC 4 cut(s) 26, 102, 177, 194
HhaI GCGC 3 cut(s) 22, 48, 152
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 3 cut(s) 40, 343, 777
Hin6I GCGC 3 cut(s) 20, 46, 150
HinP1I GCGC 3 cut(s) 20, 46, 150
HinfI GANTC 4 cut(s) 257, 263, 381, 718
HpaII CCGG 5 cut(s) 64, 179, 193, 217, 378
Hpy188I TCNGA 4 cut(s) 262, 288, 486, 802
Hpy188III TCNNGA 1 cut(s) 94
Hpy99I CGWCG 4 cut(s) 20, 188, 215, 377
HpyAV CCTTC 4 cut(s) 642, 646, 668, 755
HpyCH4III ACNGT 4 cut(s) 304, 361, 388, 446
HpyCH4IV ACGT 1 cut(s) 741
HpyCH4V TGCA 1 cut(s) 407
HpyF10VI GCNNNNNNNGC 5 cut(s) 97, 119, 229, 398, 497
HpyF3I CTNAG 1 cut(s) 644
HpySE526I ACGT 1 cut(s) 741
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 3 cut(s) 40, 343, 777
HspAI GCGC 3 cut(s) 20, 46, 150
Ksp22I TGATCA 1 cut(s) 342
Kzo9I GATC 2 cut(s) 138, 342
LmnI GCTCC 2 cut(s) 96, 788
Lsp1109I GCAGC 2 cut(s) 219, 668
LweI GCATC 1 cut(s) 407
MaeII ACGT 1 cut(s) 741
MaeIII GTNAC 1 cut(s) 730
MalI GATC 2 cut(s) 140, 344
MboI GATC 2 cut(s) 138, 342
MboII GAAGA 8 cut(s) 80, 83, 133, 506, 533, 631, 818, 821
MhlI GDGCHC 1 cut(s) 785
MlsI TGGCCA 1 cut(s) 356
MluCI AATT 5 cut(s) 226, 439, 480, 680, 823
MluI ACGCGT 1 cut(s) 186
MluNI TGGCCA 1 cut(s) 356
MlyI GAGTC 1 cut(s) 727
MnlI CCTC 9 cut(s) 71, 90, 213, 242, 346, 452, 585, 620, 796
Mox20I TGGCCA 1 cut(s) 356
MscI TGGCCA 1 cut(s) 356
MseI TTAA 3 cut(s) 225, 422, 768
MslI CAYNNNNRTG 1 cut(s) 362
Msp20I TGGCCA 1 cut(s) 356
MspA1I CMGCKG 1 cut(s) 659
MspI CCGG 5 cut(s) 64, 179, 193, 217, 378
MspR9I CCNGG 5 cut(s) 29, 65, 82, 193, 296
Mva1269I GAATGC 1 cut(s) 493
MvaI CCWGG 3 cut(s) 29, 82, 296
MvnI CGCG 5 cut(s) 20, 48, 152, 188, 392
MwoI GCNNNNNNNGC 5 cut(s) 97, 119, 229, 398, 497
NciI CCSGG 2 cut(s) 65, 193
NdeII GATC 2 cut(s) 138, 342
NlaIII CATG 3 cut(s) 40, 343, 777
NlaIV GGNNCC 1 cut(s) 784
NmuCI GTSAC 1 cut(s) 730
OliI CACNNNNGTG 1 cut(s) 362
PctI GAATGC 1 cut(s) 493
PfeI GAWTC 3 cut(s) 257, 263, 381
PfoI TCCNGGA 1 cut(s) 63
PkrI GCNGC 5 cut(s) 198, 209, 234, 254, 658
PleI GAGTC 1 cut(s) 726
PpsI GAGTC 1 cut(s) 726
Psp6I CCWGG 3 cut(s) 27, 80, 294
PspGI CCWGG 3 cut(s) 27, 80, 294
PspN4I GGNNCC 1 cut(s) 784
PspPI GGNCC 1 cut(s) 292
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 3 cut(s) 53, 468, 535
RsaNI GTAC 3 cut(s) 52, 467, 534
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 3 cut(s) 225, 422, 768
SatI GCNGC 5 cut(s) 197, 208, 233, 253, 657
Sau3AI GATC 2 cut(s) 138, 342
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 1 cut(s) 727
ScrFI CCNGG 5 cut(s) 29, 65, 82, 193, 296
SduI GDGCHC 1 cut(s) 785
SetI ASST 7 cut(s) 93, 164, 463, 563, 661, 744, 820
SfaNI GCATC 1 cut(s) 407
SinI GGWCC 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 362
Sse9I AATT 5 cut(s) 226, 439, 480, 680, 823
SsiI CCGC 5 cut(s) 152, 196, 207, 252, 751
StyD4I CCNGG 5 cut(s) 27, 63, 80, 191, 294
TaaI ACNGT 4 cut(s) 304, 361, 388, 446
TaiI ACGT 1 cut(s) 744
TaqII GACCGA 1 cut(s) 90
TasI AATT 5 cut(s) 226, 439, 480, 680, 823
TauI GCSGC 3 cut(s) 199, 210, 255
TfiI GAWTC 3 cut(s) 257, 263, 381
Tru1I TTAA 3 cut(s) 225, 422, 768
Tru9I TTAA 3 cut(s) 225, 422, 768
TscAI CASTG 1 cut(s) 729
TseFI GTSAC 1 cut(s) 730
TseI GCWGC 2 cut(s) 232, 656
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 7 cut(s) 25, 115, 254, 319, 774, 819, 828
TspGWI ACGGA 2 cut(s) 106, 305
TspRI CASTG 1 cut(s) 729
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.