Rorug06G0344600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0015245
Physical Location & Seq
Forward (+)
49576952 .. 49577535
584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0344600.1

Sequence Viewer

Length: 279 bp
ATGGCTAAAACAGTAATTCCATGCCTTCTTCTCTGCTTTCTAATCGCAACCTTGTTCACATCAACTACTAATGGGTTAAGCACAACCTTCTCCTCCAACCCAACCGGCGCTCAAAACATTCTCCTCATCAAAAGATTTGTTAAACGAGATCAAGAACGCGTACAATACTTTGCTGCGAAGCGAGGTCTGACCCAGATGCAGGAGGAGGCTCTGAAACCACGCCTTCCGGATGTTCGAAAAATGGCCGTCACCGGAAATTCCTTGTTCGTTGGTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.2

Weight (kDa)

10.14

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32750
fragaria_vesca FvH4_2g35990
malus_domestica MD08G1117000.v1.1 MD15G1096600.v1.1
prunus_persica Prupe.1G451500_v2.0.a1
pyrus_communis pycom08g09750 pycom15g08870
rosa_chinensis RchiOBHm_Chr6g0305881
rosa_laevigata RLG00000010850
rosa_roxburghii Rroxscaffold_7G00162250
rosa_rugosa Rorug06G0344600
rosa_samantha Rh6AG456500 Rh6BG444800 Rh6CG470400 Rh6DG457100
rosa_wichuraiana Rw6G039820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 159
AccIII TCCGGA 1 cut(s) 226
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 256
AfaI GTAC 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 199
AflIII ACRYGT 1 cut(s) 157
Aor13HI TCCGGA 1 cut(s) 226
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 256
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 241
AsuII TTCGAA 1 cut(s) 235
AvaII GGWCC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 160
BceAI ACGGC 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 111
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 274
BmsI GCATC 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 235
BsaWI WCCGGW 2 cut(s) 226, 251
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse118I RCCGGY 1 cut(s) 104
BseAI TCCGGA 1 cut(s) 226
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 199
BseRI GAGGAG 3 cut(s) 82, 113, 218
BseXI GCAGC 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 245
BsiSI CCGG 3 cut(s) 105, 227, 252
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 258
BsnI GGCC 1 cut(s) 245
Bsp119I TTCGAA 1 cut(s) 235
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 1 cut(s) 148
BspANI GGCC 1 cut(s) 245
BspEI TCCGGA 1 cut(s) 226
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 274
BspT104I TTCGAA 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 104
BssMI GATC 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 13
BstBI TTCGAA 1 cut(s) 235
BstF5I GGATG 1 cut(s) 235
BstFNI CGCG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 160
BsuRI GGCC 1 cut(s) 245
BtsCI GGATG 1 cut(s) 235
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 161
CviAII CATG 1 cut(s) 21
CviJI RGCY 3 cut(s) 5, 209, 245
CviKI_1 RGCY 3 cut(s) 5, 209, 245
CviQI GTAC 1 cut(s) 161
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 272
FaeI CATG 1 cut(s) 24
FaiI YATR 1 cut(s) 22
FaqI GGGAC 1 cut(s) 258
FatI CATG 1 cut(s) 20
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 174
GlaI GCGC 1 cut(s) 109
GluI GCNGC 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 1 cut(s) 245
HapII CCGG 3 cut(s) 105, 227, 252
HhaI GCGC 1 cut(s) 110
Hin1II CATG 1 cut(s) 24
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HpaII CCGG 3 cut(s) 105, 227, 252
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 2 cut(s) 189, 213
Hpy188III TCNNGA 2 cut(s) 152, 227
Hpy8I GTNNAC 1 cut(s) 57
HpyAV CCTTC 3 cut(s) 35, 97, 233
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 199
Hsp92II CATG 1 cut(s) 24
HspAI GCGC 1 cut(s) 108
Kpn2I TCCGGA 1 cut(s) 226
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 5 cut(s) 118, 185, 206, 240, 265
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 247
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 1 cut(s) 20
MluCI AATT 2 cut(s) 15, 256
MluI ACGCGT 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 5 cut(s) 103, 134, 176, 196, 199
MroI TCCGGA 1 cut(s) 226
MseI TTAA 2 cut(s) 77, 141
MspI CCGG 3 cut(s) 105, 227, 252
MvnI CGCG 1 cut(s) 159
NdeII GATC 1 cut(s) 148
NlaIII CATG 1 cut(s) 24
NlaIV GGNNCC 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 247
NspV TTCGAA 1 cut(s) 235
PkrI GCNGC 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 274
PspPI GGNCC 1 cut(s) 272
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SaqAI TTAA 2 cut(s) 77, 141
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 272
SetI ASST 3 cut(s) 53, 89, 187
SfaNI GCATC 1 cut(s) 186
SfuI TTCGAA 1 cut(s) 235
SinI GGWCC 1 cut(s) 272
Sse9I AATT 2 cut(s) 15, 256
TaaI ACNGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 235
TasI AATT 2 cut(s) 15, 256
Tru1I TTAA 2 cut(s) 77, 141
Tru9I TTAA 2 cut(s) 77, 141
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.