Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005228

Physical Location & Seq

Genomic Coordinates Reverse (-)

15944199 .. 15947072

Gene Structure 2874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G33050.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGGTCTTGAAGTTGGGTCCTTATGCTTCAAACTTAAAGACGGAGGCTTGACATCAAGAACCAACAGTTTCAAGAGAGACGATACTAATAGGCACCAGAATTCTCCTAAGAGTACTATGGAGCGGTCGTTGAGTTTCAACAGCTGGGAGGTTCCTAAAGAGACCAAGACTGATTCAGATTTTGAGGTCTTGGAGACAAAGAAGTCAACGCCTAACACTTTGAATGGAAGAAACTGTGAGAGAATCCAAATCAAGAAACCTACAGTTACTCCACCAGAGCCATTTGTGTTCTTCTCTCCTAGACCTGTCACCGAGCTTGATGCAGCTGCAACTACGTTACAAAAGGTGTACAAGAGTTACAGGACCAGAAGGAACTTAGCAGATTGTGCGGTCGTTGTTGAGGAGCTCTGGTGGAGGACTTTGGAAGGTGCAGCTTTGGATTTGAGCTCTGTGTCTTTCTTTGGAGAAGAAAAACATGAGACCGCTGTTTCGAAATGGGCACGAGCTAGAAAACGAGCTGCTAAGGTTGGGAAAGGCTTATCTAAAGATGAAAAGGCTCAGAAATTAGCTCTTCAGCATTGGCTTGAAGCTGTAAGTCCCCATAACCTAAATATCTTTGTAACTTCATATCAAAGACAAGTACCCTACTTGACATCCAAAGCTATCATTGAATATACTCTAATGATCCATCTCTTGAAATTACAGATTGACCCACGTCATCGTTACGGCCACAACTTGCACTTCTATTATGATGTCTGGTCAGCGAGCAAGAGCACACAACCATTCTTTTACTGGTTGGATATAGGAGACGGCAAAGATGTAAATCTTGAGAAACACCCTAGAAGTGTTCTGCAAAAACAATGCATCAGATACTTAGGACCGATGGAGAGAGAAGCATATGAAGTGATAGTAGAAGATGGGAGACTAATGTATAAACAGGGCATGACTCTGATCAATTCAACAGAGGAAGCCAAGTCGATTTTTGTACTTAGTACTACTAGAAACTTATACGTAGGGATTAAAAAGAAAGGTCTTTTCCAGCACTCTAGTTTCTTATCTGGAGGTGCCACAACCGCAGCAGGAAGGTTAGTCGCCCGCGATGGGATCCTTGAGGTACTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0010119 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

374

Amino Acids

42.68

Weight (kDa)

9.36

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26190 AT2G26190 AT2G26190 AT4G33050 AT4G33050 AT4G33050 AT4G33050 AT4G33050 AT4G33050
fragaria_vesca	FvH4_2g31640 FvH4_2g31640 FvH4_2g31640 FvH4_2g31640
malus_domestica	MD08G1064600.v1.1 MD15G1057300.v1.1
prunus_persica	Prupe.1G409700_v2.0.a1 Prupe.1G409700_v2.0.a1 Prupe.1G409700_v2.0.a1 Prupe.1G409800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0311181
rosa_laevigata	RLG00000010429
rosa_multiflora	Rmu_co8419083.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157930
rosa_rugosa	Rorug06G0386000 Rorug06G0386000
rosa_samantha	Rh6BG510900 Rh6CG516600 Rh6DG503100
rosa_wichuraiana	Rw6G043570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	202
AccB1I	GGYRCC	2 cut(s)	93, 1064
AccBSI	CCGCTC	1 cut(s)	124
AccII	CGCG	1 cut(s)	1098
AciI	CCGC	5 cut(s)	124, 389, 483, 1074, 1096
AclWI	GGATC	3 cut(s)	679, 1099, 1112
AcoI	YGGCCR	1 cut(s)	727
AcsI	RAATTY	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	557
AfaI	GTAC	6 cut(s)	115, 350, 642, 987, 994, 1116
AfiI	CCNNNNNNNGG	1 cut(s)	1101
AjiI	CACGTC	1 cut(s)	716
Alw21I	GWGCWC	3 cut(s)	408, 449, 776
Alw26I	GTCTC	6 cut(s)	72, 155, 188, 473, 801, 916
AlwI	GGATC	3 cut(s)	679, 1099, 1112
AoxI	GGCC	1 cut(s)	727
ApeKI	GCWGC	5 cut(s)	323, 326, 431, 518, 1076
ApoI	RAATTY	1 cut(s)	100
ArsI	GACNNNNNNTTYG	2 cut(s)	472, 504
AspS9I	GGNCC	3 cut(s)	18, 363, 878
AsuHPI	GGTGA	1 cut(s)	301
AsuII	TTCGAA	1 cut(s)	491
AvaII	GGWCC	3 cut(s)	18, 363, 878
BaeGI	GKGCMC	1 cut(s)	502
BamHI	GGATCC	1 cut(s)	1104
BanI	GGYRCC	2 cut(s)	93, 1064
BanII	GRGCYC	2 cut(s)	408, 449
BauI	CACGAG	1 cut(s)	501
Bbv12I	GWGCWC	3 cut(s)	408, 449, 776
BbvI	GCAGC	5 cut(s)	313, 335, 443, 505, 1088
BccI	CCATC	4 cut(s)	696, 877, 911, 1094
BceAI	ACGGC	2 cut(s)	742, 826
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BclI	TGATCA	1 cut(s)	951
BcoDI	GTCTC	6 cut(s)	72, 155, 188, 473, 801, 916
BfaI	CTAG	5 cut(s)	300, 507, 840, 999, 1047
BfmI	CTRYAG	1 cut(s)	261
BisI	GCNGC	5 cut(s)	324, 327, 432, 519, 1077
BlsI	GCNGC	5 cut(s)	325, 328, 433, 520, 1078
BmcAI	AGTACT	2 cut(s)	115, 994
Bme18I	GGWCC	3 cut(s)	18, 363, 878
BmgBI	CACGTC	1 cut(s)	716
BmgT120I	GGNCC	3 cut(s)	18, 363, 878
BmiI	GGNNCC	5 cut(s)	19, 95, 153, 1066, 1106
BmsI	GCATC	2 cut(s)	310, 873
BoxI	GACNNNNGTC	1 cut(s)	714
BpmI	CTGGAG	1 cut(s)	1080
Bpu10I	CCTNAGC	1 cut(s)	522
Bpu14I	TTCGAA	1 cut(s)	491
BpuEI	CTTGAG	1 cut(s)	848
BsaAI	YACGTR	1 cut(s)	1012
BsaBI	GATNNNNATC	1 cut(s)	822
BsaI	GGTCTC	2 cut(s)	155, 473
BsaXI	ACNNNNNCTCC	6 cut(s)	113, 143, 253, 283, 395, 425
Bsc4I	CCNNNNNNNGG	1 cut(s)	1101
Bse1I	ACTGG	1 cut(s)	797
Bse8I	GATNNNNATC	1 cut(s)	822
BseGI	GGATG	1 cut(s)	653
BseJI	GATNNNNATC	1 cut(s)	822
BseLI	CCNNNNNNNGG	1 cut(s)	1101
BseMII	CTCAG	1 cut(s)	572
BseNI	ACTGG	1 cut(s)	797
BseRI	GAGGAG	1 cut(s)	416
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	5 cut(s)	313, 335, 443, 505, 1088
BseYI	CCCAGC	1 cut(s)	144
BsgI	GTGCAG	1 cut(s)	450
Bsh1236I	CGCG	1 cut(s)	1098
Bsh1285I	CGRYCG	2 cut(s)	128, 393
BshFI	GGCC	1 cut(s)	729
BshNI	GGYRCC	2 cut(s)	93, 1064
BsiEI	CGRYCG	2 cut(s)	128, 393
BsiHKAI	GWGCWC	3 cut(s)	408, 449, 776
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	1 cut(s)	1101
BsmAI	GTCTC	6 cut(s)	72, 155, 188, 473, 801, 916
BsmBI	CGTCTC	2 cut(s)	72, 801
BsmFI	GGGAC	1 cut(s)	582
BsnI	GGCC	1 cut(s)	729
Bso31I	GGTCTC	2 cut(s)	155, 473
Bsp119I	TTCGAA	1 cut(s)	491
Bsp1286I	GDGCHC	4 cut(s)	408, 449, 502, 776
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	3 cut(s)	684, 951, 1104
BspACI	CCGC	5 cut(s)	124, 389, 483, 1074, 1096
BspANI	GGCC	1 cut(s)	729
BspCNI	CTCAG	1 cut(s)	571
BspFNI	CGCG	1 cut(s)	1098
BspLI	GGNNCC	5 cut(s)	19, 95, 153, 1066, 1106
BspPI	GGATC	3 cut(s)	679, 1099, 1112
BspQI	GCTCTTC	1 cut(s)	576
BspT104I	TTCGAA	1 cut(s)	491
BspT107I	GGYRCC	2 cut(s)	93, 1064
BspTNI	GGTCTC	2 cut(s)	155, 473
BsrBI	CCGCTC	1 cut(s)	124
BsrGI	TGTACA	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	797
BssMI	GATC	3 cut(s)	684, 951, 1104
BssSI	CACGAG	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	501
Bst4CI	ACNGT	3 cut(s)	68, 236, 265
Bst6I	CTCTTC	1 cut(s)	576
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstAUI	TGTACA	1 cut(s)	348
BstBAI	YACGTR	1 cut(s)	1012
BstBI	TTCGAA	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	766, 1096
BstDEI	CTNAG	6 cut(s)	108, 376, 522, 558, 874, 989
BstF5I	GGATG	1 cut(s)	653
BstFNI	CGCG	1 cut(s)	1098
BstKTI	GATC	3 cut(s)	687, 954, 1107
BstMAI	GTCTC	6 cut(s)	72, 155, 188, 473, 801, 916
BstMBI	GATC	3 cut(s)	684, 951, 1104
BstMCI	CGRYCG	2 cut(s)	128, 393
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 1073
BstPAI	GACNNNNGTC	1 cut(s)	714
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	502
BstSNI	TACGTA	1 cut(s)	1012
BstUI	CGCG	1 cut(s)	1098
BstV1I	GCAGC	5 cut(s)	313, 335, 443, 505, 1088
BstX2I	RGATCY	1 cut(s)	1104
BstYI	RGATCY	1 cut(s)	1104
BsuRI	GGCC	1 cut(s)	729
BtgZI	GCGATG	1 cut(s)	1113
BtrI	CACGTC	1 cut(s)	716
BtsCI	GGATG	1 cut(s)	653
Cac8I	GCNNGC	2 cut(s)	766, 1096
Cfr13I	GGNCC	3 cut(s)	18, 363, 878
Csp6I	GTAC	6 cut(s)	114, 349, 641, 986, 993, 1115
CviAII	CATG	2 cut(s)	476, 943
CviQI	GTAC	6 cut(s)	114, 349, 641, 986, 993, 1115
DdeI	CTNAG	6 cut(s)	108, 376, 522, 558, 874, 989
DpnI	GATC	3 cut(s)	686, 953, 1106
DpnII	GATC	3 cut(s)	684, 951, 1104
DrdI	GACNNNNNNGTC	1 cut(s)	202
DseDI	GACNNNNNNGTC	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	727
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Ecl136II	GAGCTC	2 cut(s)	406, 447
Eco105I	TACGTA	1 cut(s)	1012
Eco24I	GRGCYC	2 cut(s)	408, 449
Eco31I	GGTCTC	2 cut(s)	155, 473
Eco47I	GGWCC	3 cut(s)	18, 363, 878
Eco53kI	GAGCTC	2 cut(s)	406, 447
Eco57I	CTGAAG	1 cut(s)	557
EcoICRI	GAGCTC	2 cut(s)	406, 447
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRI	GAATTC	1 cut(s)	100
EcoT22I	ATGCAT	1 cut(s)	866
EcoT38I	GRGCYC	2 cut(s)	408, 449
Esp3I	CGTCTC	2 cut(s)	72, 801
FaeI	CATG	2 cut(s)	479, 946
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	2 cut(s)	475, 942
FauI	CCCGC	1 cut(s)	1103
FauNDI	CATATG	1 cut(s)	898
FbaI	TGATCA	1 cut(s)	951
Fnu4HI	GCNGC	5 cut(s)	324, 327, 432, 519, 1077
FokI	GGATG	1 cut(s)	640
FriOI	GRGCYC	2 cut(s)	408, 449
Fsp4HI	GCNGC	5 cut(s)	324, 327, 432, 519, 1077
FspBI	CTAG	5 cut(s)	300, 507, 840, 999, 1047
GluI	GCNGC	5 cut(s)	324, 327, 432, 519, 1077
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	1080
HaeIII	GGCC	1 cut(s)	729
Hin1II	CATG	2 cut(s)	479, 946
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	3 cut(s)	173, 243, 946
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	2 cut(s)	207, 349
Hpy188I	TCNGA	4 cut(s)	178, 561, 869, 951
Hpy188III	TCNNGA	7 cut(s)	8, 57, 73, 253, 694, 827, 1059
Hpy8I	GTNNAC	2 cut(s)	207, 349
HpyAV	CCTTC	3 cut(s)	363, 419, 1077
HpyCH4III	ACNGT	3 cut(s)	68, 236, 265
HpyCH4IV	ACGT	3 cut(s)	335, 715, 1011
HpyCH4V	TGCA	6 cut(s)	323, 329, 431, 739, 853, 864
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 1073
HpyF3I	CTNAG	6 cut(s)	108, 376, 522, 558, 874, 989
HpySE526I	ACGT	3 cut(s)	335, 715, 1011
Hsp92II	CATG	2 cut(s)	479, 946
Ksp22I	TGATCA	1 cut(s)	951
Kzo9I	GATC	3 cut(s)	684, 951, 1104
LguI	GCTCTTC	1 cut(s)	576
LmnI	GCTCC	2 cut(s)	121, 403
Lsp1109I	GCAGC	5 cut(s)	313, 335, 443, 505, 1088
LweI	GCATC	2 cut(s)	310, 873
MaeI	CTAG	5 cut(s)	300, 507, 840, 999, 1047
MaeII	ACGT	3 cut(s)	335, 715, 1011
MaeIII	GTNAC	6 cut(s)	265, 307, 336, 356, 619, 722
MalI	GATC	3 cut(s)	686, 953, 1106
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	3 cut(s)	684, 951, 1104
MboII	GAAGA	5 cut(s)	240, 283, 479, 563, 926
MflI	RGATCY	1 cut(s)	1104
MhlI	GDGCHC	4 cut(s)	408, 449, 502, 776
MluCI	AATT	4 cut(s)	100, 563, 698, 955
MlyI	GAGTC	1 cut(s)	940
MmeI	TCCRAC	1 cut(s)	777
MnlI	CCTC	8 cut(s)	38, 142, 178, 394, 408, 958, 1055, 1105
Mph1103I	ATGCAT	1 cut(s)	866
MseI	TTAA	2 cut(s)	36, 1020
MspA1I	CMGCKG	3 cut(s)	144, 326, 485
MvnI	CGCG	1 cut(s)	1098
MwoI	GCNNNNNNNGC	2 cut(s)	386, 1073
NdeI	CATATG	1 cut(s)	898
NdeII	GATC	3 cut(s)	684, 951, 1104
NlaIII	CATG	2 cut(s)	479, 946
NlaIV	GGNNCC	5 cut(s)	19, 95, 153, 1066, 1106
NmuCI	GTSAC	1 cut(s)	307
NsiI	ATGCAT	1 cut(s)	866
NspV	TTCGAA	1 cut(s)	491
PciSI	GCTCTTC	1 cut(s)	576
PfeI	GAWTC	2 cut(s)	173, 243
PkrI	GCNGC	5 cut(s)	325, 328, 433, 520, 1078
PleI	GAGTC	1 cut(s)	940
PpsI	GAGTC	1 cut(s)	940
Ppu21I	YACGTR	1 cut(s)	1012
PpuMI	RGGWCCY	1 cut(s)	18
PshAI	GACNNNNGTC	1 cut(s)	714
Psp124BI	GAGCTC	2 cut(s)	408, 449
Psp5II	RGGWCCY	1 cut(s)	18
PspFI	CCCAGC	1 cut(s)	144
PspN4I	GGNNCC	5 cut(s)	19, 95, 153, 1066, 1106
PspPI	GGNCC	3 cut(s)	18, 363, 878
PspPPI	RGGWCCY	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	1104
PvuII	CAGCTG	2 cut(s)	144, 326
RsaI	GTAC	6 cut(s)	115, 350, 642, 987, 994, 1116
RsaNI	GTAC	6 cut(s)	114, 349, 641, 986, 993, 1115
SacI	GAGCTC	2 cut(s)	408, 449
SapI	GCTCTTC	1 cut(s)	576
SaqAI	TTAA	2 cut(s)	36, 1020
SatI	GCNGC	5 cut(s)	324, 327, 432, 519, 1077
Sau3AI	GATC	3 cut(s)	684, 951, 1104
Sau96I	GGNCC	3 cut(s)	18, 363, 878
ScaI	AGTACT	2 cut(s)	115, 994
SchI	GAGTC	1 cut(s)	940
SduI	GDGCHC	4 cut(s)	408, 449, 502, 776
SfaNI	GCATC	2 cut(s)	310, 873
SfcI	CTRYAG	1 cut(s)	261
SfuI	TTCGAA	1 cut(s)	491
SinI	GGWCC	3 cut(s)	18, 363, 878
SmlI	CTYRAG	2 cut(s)	827, 1109
SmoI	CTYRAG	2 cut(s)	827, 1109
SnaBI	TACGTA	1 cut(s)	1012
Sse9I	AATT	4 cut(s)	100, 563, 698, 955
SsiI	CCGC	5 cut(s)	124, 389, 483, 1074, 1096
SspMI	CTAG	5 cut(s)	300, 507, 840, 999, 1047
SstI	GAGCTC	2 cut(s)	408, 449
TaaI	ACNGT	3 cut(s)	68, 236, 265
TaiI	ACGT	3 cut(s)	338, 718, 1014
TaqI	TCGA	2 cut(s)	491, 977
TaqII	GACCGA	1 cut(s)	895
TasI	AATT	4 cut(s)	100, 563, 698, 955
TatI	WGTACW	4 cut(s)	113, 348, 985, 992
TfiI	GAWTC	2 cut(s)	173, 243
Tru1I	TTAA	2 cut(s)	36, 1020
Tru9I	TTAA	2 cut(s)	36, 1020
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	5 cut(s)	323, 326, 431, 518, 1076
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	564, 615, 915
TspGWI	ACGGA	1 cut(s)	57
VpaK11BI	GGWCC	3 cut(s)	18, 363, 878
XapI	RAATTY	1 cut(s)	100
XcmI	CCANNNNNNNNNTGG	1 cut(s)	789
XspI	CTAG	5 cut(s)	300, 507, 840, 999, 1047
ZrmI	AGTACT	2 cut(s)	115, 994
Zsp2I	ATGCAT	1 cut(s)	866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.