Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8419083.1

Orthogroup ID

OG0005228

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1309

Gene Structure 1309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8419083.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ctggaaagaaattcagtgtcattcttcgacattgagaaacatgaaactgctgtgtcaaagtggacaagagctaggaaaagggcagccaagttagggaaggggttgtgcaaggatgagaaggctcagaaactagccctgcagcattggcttgaagctattgatccacgccatcggtatggacacaatttgcaattctactatgatgtgtggactgcttgcaagagcactcaacctttcttctactggttggatgttggtgatggtaaagacacaaatgtcaagaagtgtccaaggcctgatctccaacgccagtgcatcaaatatcttgaaccaagagagagagaagcatatgaagtgattgtagaggagggaaagctagtgcaaaagcaatcagggttccttgttgacacagacgaagggtcaaagtggatatttgtgctgagcacatcaaggtctttatatgtaggacagaaaaagaaaggtgtttttcagcattcaagtttcctctctggaggggctactactgcagctggaagactagttgctcataatggggttcttgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

188

Amino Acids

21.57

Weight (kDa)

9.3

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26190 AT2G26190 AT2G26190 AT4G33050 AT4G33050 AT4G33050 AT4G33050 AT4G33050 AT4G33050
fragaria_vesca	FvH4_2g31640 FvH4_2g31640 FvH4_2g31640 FvH4_2g31640
malus_domestica	MD08G1064600.v1.1 MD15G1057300.v1.1
prunus_persica	Prupe.1G409700_v2.0.a1 Prupe.1G409700_v2.0.a1 Prupe.1G409700_v2.0.a1 Prupe.1G409800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0311181
rosa_laevigata	RLG00000010429
rosa_multiflora	Rmu_co8419083.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157930
rosa_rugosa	Rorug06G0386000 Rorug06G0386000
rosa_samantha	Rh6BG510900 Rh6CG516600 Rh6DG503100
rosa_wichuraiana	Rw6G043570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AclWI	GGATC	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	3 cut(s)	152, 329, 498
AhdI	GACNNNNNGTC	1 cut(s)	418
AhlI	ACTAGT	1 cut(s)	538
AluBI	AGCT	4 cut(s)	71, 155, 376, 530
AluI	AGCT	4 cut(s)	71, 155, 376, 530
Alw21I	GWGCWC	2 cut(s)	227, 446
AlwI	GGATC	1 cut(s)	155
AoxI	GGCC	1 cut(s)	293
ApeKI	GCWGC	3 cut(s)	83, 139, 527
ApoI	RAATTY	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	541
Bbv12I	GWGCWC	2 cut(s)	227, 446
BbvI	GCAGC	3 cut(s)	95, 151, 539
BccI	CCATC	2 cut(s)	177, 254
BcuI	ACTAGT	1 cut(s)	538
BfaI	CTAG	4 cut(s)	72, 131, 377, 539
BfmI	CTRYAG	2 cut(s)	137, 525
BisI	GCNGC	3 cut(s)	84, 140, 528
BlpI	GCTNAGC	1 cut(s)	440
BlsI	GCNGC	3 cut(s)	85, 141, 529
BmeRI	GACNNNNNGTC	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	398
BmsI	GCATC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	541
BpmI	CTGGAG	1 cut(s)	531
Bpu1102I	GCTNAGC	1 cut(s)	440
BsaJI	CCNNGG	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse1I	ACTGG	2 cut(s)	248, 310
BseDI	CCNNGG	1 cut(s)	290
BseGI	GGATG	2 cut(s)	118, 256
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMII	CTCAG	2 cut(s)	137, 431
BseNI	ACTGG	2 cut(s)	248, 310
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	3 cut(s)	95, 151, 539
BshFI	GGCC	1 cut(s)	295
BsiHKAI	GWGCWC	2 cut(s)	227, 446
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	1 cut(s)	295
Bsp1286I	GDGCHC	2 cut(s)	227, 446
Bsp143I	GATC	2 cut(s)	160, 298
Bsp1720I	GCTNAGC	1 cut(s)	440
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	2 cut(s)	136, 432
BspLI	GGNNCC	1 cut(s)	398
BspMAI	CTGCAG	2 cut(s)	141, 529
BspPI	GGATC	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	248, 310
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	2 cut(s)	160, 298
BssT1I	CCWWGG	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	2 cut(s)	123, 440
BstF5I	GGATG	2 cut(s)	118, 256
BstKTI	GATC	2 cut(s)	163, 301
BstMBI	GATC	2 cut(s)	160, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 524
BstSFI	CTRYAG	2 cut(s)	137, 525
BstV1I	GCAGC	3 cut(s)	95, 151, 539
BstV2I	GAAGAC	1 cut(s)	541
BstXI	CCANNNNNNTGG	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	118, 256
BtsIMutI	CAGTG	2 cut(s)	21, 317
Cac8I	GCNNGC	1 cut(s)	217
CviAII	CATG	1 cut(s)	41
DdeI	CTNAG	2 cut(s)	123, 440
DpnI	GATC	2 cut(s)	162, 300
DpnII	GATC	2 cut(s)	160, 298
DrdI	GACNNNNNNGTC	1 cut(s)	275
DriI	GACNNNNNGTC	1 cut(s)	418
DseDI	GACNNNNNNGTC	1 cut(s)	275
Eam1105I	GACNNNNNGTC	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	290
Eco147I	AGGCCT	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	1 cut(s)	44
FaiI	YATR	8 cut(s)	42, 177, 201, 349, 351, 460, 462, 549
FatI	CATG	1 cut(s)	40
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	3 cut(s)	84, 140, 528
FokI	GGATG	2 cut(s)	125, 263
Fsp4HI	GCNGC	3 cut(s)	84, 140, 528
FspBI	CTAG	4 cut(s)	72, 131, 377, 539
GluI	GCNGC	3 cut(s)	84, 140, 528
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	1 cut(s)	295
Hin1II	CATG	1 cut(s)	44
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	3 cut(s)	63, 210, 406
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	4 cut(s)	280, 326, 510, 560
Hpy8I	GTNNAC	3 cut(s)	63, 210, 406
HpyAV	CCTTC	3 cut(s)	91, 112, 410
HpyCH4V	TGCA	7 cut(s)	108, 139, 190, 219, 315, 382, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 524
HpyF3I	CTNAG	2 cut(s)	123, 440
Hsp92II	CATG	1 cut(s)	44
Kzo9I	GATC	2 cut(s)	160, 298
LpnPI	CCDG	7 cut(s)	149, 229, 309, 323, 378, 495, 516
Lsp1109I	GCAGC	3 cut(s)	95, 151, 539
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	4 cut(s)	72, 131, 377, 539
MalI	GATC	2 cut(s)	162, 300
MboI	GATC	2 cut(s)	160, 298
MboII	GAAGA	3 cut(s)	16, 229, 546
MhlI	GDGCHC	2 cut(s)	227, 446
MluCI	AATT	3 cut(s)	10, 184, 191
MmeI	TCCRAC	2 cut(s)	228, 328
MnlI	CCTC	4 cut(s)	358, 361, 506, 515
MslI	CAYNNNNRTG	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	530
Mva1269I	GAATGC	1 cut(s)	493
MwoI	GCNNNNNNNGC	2 cut(s)	145, 524
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	2 cut(s)	160, 298
NlaIII	CATG	1 cut(s)	44
NlaIV	GGNNCC	1 cut(s)	398
PceI	AGGCCT	1 cut(s)	295
PctI	GAATGC	1 cut(s)	493
PkrI	GCNGC	3 cut(s)	85, 141, 529
PspN4I	GGNNCC	1 cut(s)	398
PstI	CTGCAG	2 cut(s)	141, 529
PvuII	CAGCTG	1 cut(s)	530
RseI	CAYNNNNRTG	1 cut(s)	174
SatI	GCNGC	3 cut(s)	84, 140, 528
Sau3AI	GATC	2 cut(s)	160, 298
SduI	GDGCHC	2 cut(s)	227, 446
SetI	ASST	7 cut(s)	73, 157, 235, 378, 455, 484, 532
SfaNI	GCATC	1 cut(s)	324
SfcI	CTRYAG	2 cut(s)	137, 525
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SpeI	ACTAGT	1 cut(s)	538
Sse9I	AATT	3 cut(s)	10, 184, 191
SseBI	AGGCCT	1 cut(s)	295
SspMI	CTAG	4 cut(s)	72, 131, 377, 539
StuI	AGGCCT	1 cut(s)	295
StyI	CCWWGG	1 cut(s)	290
TaqI	TCGA	1 cut(s)	27
TasI	AATT	3 cut(s)	10, 184, 191
TscAI	CASTG	2 cut(s)	21, 317
TseI	GCWGC	3 cut(s)	83, 139, 527
TspDTI	ATGAA	2 cut(s)	57, 366
TspRI	CASTG	2 cut(s)	21, 317
XapI	RAATTY	1 cut(s)	10
XspI	CTAG	4 cut(s)	72, 131, 377, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.