Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005228

Physical Location & Seq

Genomic Coordinates Reverse (-)

65847079 .. 65848796

Gene Structure 1718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG503100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCACTTCTATACATTCAATTTTGTACAGAAAGCTGTCTTCATTAGAGAGAGAGAAGCATATGAAGTGATTGTAGAGGAGGGAAAGCTAGTGCAAAAGCAATCAGGGTTCCTTGTTGACACAGACCCTTCATCTAAGTGGATATTTGTGCTGAGCACATCAAGGTCTTTATATGTAGGCCAGAAAAAGAAAGGTGTTTTTCAGCATTCAAGTTTCCTCTCTGGAGGGGCTACTACTGCAGCTGGAAGACTAGTTGCTCATAATGGGGTTCTTGAGGCTATATGGCCATACAGTGGTCACTATCTTCCAACCGCAGACAACTTCAAGGAATTCATTAGCTTCCTGAAAGAGCACAATGTAGACCTCACCAATGTCAAGATGTATGCTGTTGATGAAGACAAAGCATATCAAAATGAGGAGTGCTCTAAGCCAGAGGTGACTGGTTCATCCACAACCAAAGTGACCTTGGATGATTCTAGTAGTGGTGCTGCCATTGAAGTTCCAGCAGATCATCATCAACAACTTGAGAGTAATGGGAGCAGTTCAAGTAGTAATGCAGATGAAGCAGAAGAAGAACAAGCACAAGCATTTGACATGTCAAAGCGCTTGGCTTGCAAGTGGAGCAGTGGCATTGGGCCACGTATTGGGTGTGTGAGGGACTATCCAGCTGACCTTCAATCCCTAGCTCTTGAGAAAGTCAATCTATCACCAAGAGTCACATTGGGCCGCCATGAAAGTTATGCCCCAATTCCCTCACCTAGACCAAGCCCAAAGATCAGGGTCTCACCTAGGCTTTCCTATATGGGCCTCCCCAGCCCAAGGGTACCCAATTCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

279

Amino Acids

30.81

Weight (kDa)

6.26

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26190 AT2G26190 AT2G26190 AT4G33050 AT4G33050 AT4G33050 AT4G33050 AT4G33050 AT4G33050
fragaria_vesca	FvH4_2g31640 FvH4_2g31640 FvH4_2g31640 FvH4_2g31640
malus_domestica	MD08G1064600.v1.1 MD15G1057300.v1.1
prunus_persica	Prupe.1G409700_v2.0.a1 Prupe.1G409700_v2.0.a1 Prupe.1G409700_v2.0.a1 Prupe.1G409800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0311181
rosa_laevigata	RLG00000010429
rosa_multiflora	Rmu_co8419083.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157930
rosa_rugosa	Rorug06G0386000 Rorug06G0386000
rosa_samantha	Rh6BG510900 Rh6CG516600 Rh6DG503100
rosa_wichuraiana	Rw6G043570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	823
AccB1I	GGYRCC	1 cut(s)	823
AccB7I	CCANNNNNTGG	2 cut(s)	293, 644
AccI	GTMKAC	1 cut(s)	360
AciI	CCGC	2 cut(s)	312, 727
AcoI	YGGCCR	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	329
AfaI	GTAC	2 cut(s)	27, 825
AfeI	AGCGCT	1 cut(s)	605
AfiI	CCNNNNNNNGG	3 cut(s)	293, 644, 819
AflIII	ACRYGT	1 cut(s)	594
AgsI	TTSAA	6 cut(s)	19, 210, 325, 497, 546, 677
AhlI	ACTAGT	1 cut(s)	250
AluBI	AGCT	6 cut(s)	35, 88, 242, 339, 668, 686
AluI	AGCT	6 cut(s)	35, 88, 242, 339, 668, 686
Alw21I	GWGCWC	3 cut(s)	158, 354, 425
Alw26I	GTCTC	1 cut(s)	787
Aor51HI	AGCGCT	1 cut(s)	605
AoxI	GGCC	5 cut(s)	178, 284, 635, 724, 805
ApeKI	GCWGC	2 cut(s)	239, 488
ApoI	RAATTY	1 cut(s)	329
Asp718I	GGTACC	1 cut(s)	823
AspA2I	CCTAGG	1 cut(s)	788
AspLEI	GCGC	1 cut(s)	606
AspS9I	GGNCC	3 cut(s)	635, 724, 805
AsuHPI	GGTGA	5 cut(s)	358, 448, 699, 747, 777
AvrII	CCTAGG	1 cut(s)	788
BalI	TGGCCA	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	823
BbsI	GAAGAC	3 cut(s)	31, 253, 402
Bbv12I	GWGCWC	3 cut(s)	158, 354, 425
BbvI	GCAGC	2 cut(s)	251, 475
BcoDI	GTCTC	1 cut(s)	787
BcuI	ACTAGT	1 cut(s)	250
BfaI	CTAG	6 cut(s)	89, 251, 477, 683, 759, 789
BfmI	CTRYAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	607
BisI	GCNGC	3 cut(s)	240, 489, 727
BlnI	CCTAGG	1 cut(s)	788
BlpI	GCTNAGC	1 cut(s)	152
BlsI	GCNGC	3 cut(s)	241, 490, 728
BmgT120I	GGNCC	3 cut(s)	635, 724, 805
BmiI	GGNNCC	2 cut(s)	110, 825
BpiI	GAAGAC	3 cut(s)	31, 253, 402
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
BpmI	CTGGAG	1 cut(s)	243
Bpu1102I	GCTNAGC	1 cut(s)	152
BpuEI	CTTGAG	3 cut(s)	293, 545, 710
BsaAI	YACGTR	1 cut(s)	641
BsaBI	GATNNNNATC	1 cut(s)	513
BsaI	GGTCTC	1 cut(s)	787
BsaJI	CCNNGG	3 cut(s)	465, 788, 818
Bsc4I	CCNNNNNNNGG	3 cut(s)	293, 644, 819
Bse1I	ACTGG	1 cut(s)	445
Bse8I	GATNNNNATC	1 cut(s)	513
BseDI	CCNNGG	3 cut(s)	465, 788, 818
BseGI	GGATG	2 cut(s)	446, 475
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	3 cut(s)	293, 644, 819
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	445
BseRI	GAGGAG	2 cut(s)	92, 431
BseXI	GCAGC	2 cut(s)	251, 475
BseYI	CCCAGC	1 cut(s)	812
BshFI	GGCC	5 cut(s)	180, 286, 637, 726, 807
BshNI	GGYRCC	1 cut(s)	823
BsiHKAI	GWGCWC	3 cut(s)	158, 354, 425
BslFI	GGGAC	1 cut(s)	671
BslI	CCNNNNNNNGG	3 cut(s)	293, 644, 819
BsmAI	GTCTC	1 cut(s)	787
BsmFI	GGGAC	1 cut(s)	671
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	5 cut(s)	180, 286, 637, 726, 807
Bso31I	GGTCTC	1 cut(s)	787
Bsp1286I	GDGCHC	3 cut(s)	158, 354, 425
Bsp1407I	TGTACA	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	508, 774
Bsp1720I	GCTNAGC	1 cut(s)	152
BspACI	CCGC	2 cut(s)	312, 727
BspANI	GGCC	5 cut(s)	180, 286, 637, 726, 807
BspCNI	CTCAG	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	110, 825
BspMAI	CTGCAG	1 cut(s)	241
BspT107I	GGYRCC	1 cut(s)	823
BspTNI	GGTCTC	1 cut(s)	787
BsrGI	TGTACA	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	445
BssECI	CCNNGG	3 cut(s)	465, 788, 818
BssMI	GATC	2 cut(s)	508, 774
BssT1I	CCWWGG	3 cut(s)	465, 788, 818
Bst4CI	ACNGT	1 cut(s)	293
BstAUI	TGTACA	1 cut(s)	25
BstBAI	YACGTR	1 cut(s)	641
BstC8I	GCNNGC	1 cut(s)	613
BstDEI	CTNAG	3 cut(s)	135, 152, 426
BstF5I	GGATG	2 cut(s)	446, 475
BstH2I	RGCGCY	1 cut(s)	607
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	2 cut(s)	511, 777
BstMAI	GTCTC	1 cut(s)	787
BstMBI	GATC	2 cut(s)	508, 774
BstMWI	GCNNNNNNNGC	5 cut(s)	236, 563, 612, 621, 813
BstNSI	RCATGY	1 cut(s)	598
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	251, 475
BstV2I	GAAGAC	3 cut(s)	31, 253, 402
BsuRI	GGCC	5 cut(s)	180, 286, 637, 726, 807
BtsCI	GGATG	2 cut(s)	446, 475
BtsI	GCAGTG	1 cut(s)	631
BtsIMutI	CAGTG	2 cut(s)	298, 631
Cac8I	GCNNGC	1 cut(s)	613
CfoI	GCGC	1 cut(s)	606
Cfr13I	GGNCC	3 cut(s)	635, 724, 805
Csp6I	GTAC	2 cut(s)	26, 824
CviAII	CATG	2 cut(s)	595, 731
CviQI	GTAC	2 cut(s)	26, 824
DdeI	CTNAG	3 cut(s)	135, 152, 426
DpnI	GATC	2 cut(s)	510, 776
DpnII	GATC	2 cut(s)	508, 774
EaeI	YGGCCR	1 cut(s)	284
Eco130I	CCWWGG	3 cut(s)	465, 788, 818
Eco31I	GGTCTC	1 cut(s)	787
Eco47III	AGCGCT	1 cut(s)	605
EcoRI	GAATTC	1 cut(s)	329
EcoT14I	CCWWGG	3 cut(s)	465, 788, 818
ErhI	CCWWGG	3 cut(s)	465, 788, 818
FaeI	CATG	2 cut(s)	598, 734
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	2 cut(s)	594, 730
FauNDI	CATATG	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	3 cut(s)	240, 489, 727
FokI	GGATG	2 cut(s)	433, 482
Fsp4HI	GCNGC	3 cut(s)	240, 489, 727
FspBI	CTAG	6 cut(s)	89, 251, 477, 683, 759, 789
GlaI	GCGC	1 cut(s)	605
GluI	GCNGC	3 cut(s)	240, 489, 727
GsaI	CCCAGC	1 cut(s)	816
GsuI	CTGGAG	1 cut(s)	243
HaeII	RGCGCY	1 cut(s)	607
HaeIII	GGCC	5 cut(s)	180, 286, 637, 726, 807
HhaI	GCGC	1 cut(s)	606
Hin1II	CATG	2 cut(s)	598, 734
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	473, 714
HphI	GGTGA	5 cut(s)	358, 448, 699, 747, 777
Hpy166II	GTNNAC	2 cut(s)	118, 361
Hpy188III	TCNNGA	5 cut(s)	222, 272, 343, 376, 689
Hpy8I	GTNNAC	2 cut(s)	118, 361
HpyAV	CCTTC	2 cut(s)	138, 683
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	640
HpyCH4V	TGCA	5 cut(s)	4, 94, 239, 557, 615
HpyF10VI	GCNNNNNNNGC	5 cut(s)	236, 563, 612, 621, 813
HpyF3I	CTNAG	3 cut(s)	135, 152, 426
HpySE526I	ACGT	1 cut(s)	640
Hsp92II	CATG	2 cut(s)	598, 734
HspAI	GCGC	1 cut(s)	604
KpnI	GGTACC	1 cut(s)	827
Kzo9I	GATC	2 cut(s)	508, 774
LmnI	GCTCC	2 cut(s)	537, 621
Lsp1109I	GCAGC	2 cut(s)	251, 475
MaeI	CTAG	6 cut(s)	89, 251, 477, 683, 759, 789
MaeII	ACGT	1 cut(s)	640
MaeIII	GTNAC	4 cut(s)	296, 436, 460, 715
MalI	GATC	2 cut(s)	510, 776
MboI	GATC	2 cut(s)	508, 774
MboII	GAAGA	6 cut(s)	31, 258, 296, 407, 581, 584
MhlI	GDGCHC	3 cut(s)	158, 354, 425
MlsI	TGGCCA	1 cut(s)	286
MluCI	AATT	5 cut(s)	19, 329, 747, 829, 835
MluNI	TGGCCA	1 cut(s)	286
MlyI	GAGTC	1 cut(s)	723
MmeI	TCCRAC	1 cut(s)	332
Mox20I	TGGCCA	1 cut(s)	286
MscI	TGGCCA	1 cut(s)	286
MslI	CAYNNNNRTG	1 cut(s)	136
Msp20I	TGGCCA	1 cut(s)	286
MspA1I	CMGCKG	2 cut(s)	242, 668
Mva1269I	GAATGC	1 cut(s)	205
MwoI	GCNNNNNNNGC	5 cut(s)	236, 563, 612, 621, 813
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	2 cut(s)	508, 774
NlaIII	CATG	2 cut(s)	598, 734
NlaIV	GGNNCC	2 cut(s)	110, 825
NmuCI	GTSAC	4 cut(s)	296, 436, 460, 715
NspI	RCATGY	1 cut(s)	598
PciI	ACATGT	1 cut(s)	594
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	473
PflMI	CCANNNNNTGG	2 cut(s)	293, 644
PkrI	GCNGC	3 cut(s)	241, 490, 728
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
Ppu21I	YACGTR	1 cut(s)	641
PscI	ACATGT	1 cut(s)	594
PspFI	CCCAGC	1 cut(s)	812
PspN4I	GGNNCC	2 cut(s)	110, 825
PspPI	GGNCC	3 cut(s)	635, 724, 805
PstI	CTGCAG	1 cut(s)	241
PvuII	CAGCTG	2 cut(s)	242, 668
RsaI	GTAC	2 cut(s)	27, 825
RsaNI	GTAC	2 cut(s)	26, 824
RseI	CAYNNNNRTG	1 cut(s)	136
SatI	GCNGC	3 cut(s)	240, 489, 727
Sau3AI	GATC	2 cut(s)	508, 774
Sau96I	GGNCC	3 cut(s)	635, 724, 805
SchI	GAGTC	1 cut(s)	723
SduI	GDGCHC	3 cut(s)	158, 354, 425
SfcI	CTRYAG	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	136
SmlI	CTYRAG	3 cut(s)	272, 524, 689
SmoI	CTYRAG	3 cut(s)	272, 524, 689
SpeI	ACTAGT	1 cut(s)	250
Sse9I	AATT	5 cut(s)	19, 329, 747, 829, 835
SsiI	CCGC	2 cut(s)	312, 727
SspMI	CTAG	6 cut(s)	89, 251, 477, 683, 759, 789
StyI	CCWWGG	3 cut(s)	465, 788, 818
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	643
TasI	AATT	5 cut(s)	19, 329, 747, 829, 835
TatI	WGTACW	1 cut(s)	25
TauI	GCSGC	1 cut(s)	729
TfiI	GAWTC	1 cut(s)	473
TscAI	CASTG	2 cut(s)	298, 631
TseFI	GTSAC	4 cut(s)	296, 436, 460, 715
TseI	GCWGC	2 cut(s)	239, 488
Tsp45I	GTSAC	4 cut(s)	296, 436, 460, 715
TspDTI	ATGAA	8 cut(s)	31, 78, 120, 322, 408, 435, 576, 747
TspRI	CASTG	2 cut(s)	298, 631
Van91I	CCANNNNNTGG	2 cut(s)	293, 644
XapI	RAATTY	1 cut(s)	329
XceI	RCATGY	1 cut(s)	598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XmaJI	CCTAGG	1 cut(s)	788
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	6 cut(s)	89, 251, 477, 683, 759, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.