Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0005228

Physical Location & Seq

Genomic Coordinates Reverse (-)

5133461 .. 5136373

Gene Structure 2913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1064600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCTTTGTTACACTTTTGTTCCTTCTTGTACAAGAAATCCCTTGTTTATTGTGTTTGTCGAATTGTTGCAGGTGGAAGGCCATGGACTTTGTACTCTGAAACAAAGCTCAATATCTTTCTTCAACTCGGAGGAAACCGAAACTGCTGTGTCACGGTGGGCACGGTCTAGGACAAGGGCTGCCAAGATAGGGAAGGGTTTGTGCAAGGACGAGAAGGCTCAGATACTAGCTCCTCAGTACTGGCTTGAAGCTATTGATCCATTGCATCGGTGTGGAGACAATTTGCAGTTATACCGTGAAATGTGGTTGGATGTTGGTGAGGGTAAAGATATAAATCTCGAGAACTGCCCGAGGATCGATCTGCAACGTCAGTGCATCAAATATCTTGGACCATCGGAGAGGGGGACATATGAAGTGATTGTGCAAAATGGAAAGCTCATGCACAGGCAAACTGGGATACTTGTTAACACAATTGAAGGCTCTGAGTGCATTTTTGTGCTCAGCACATCAAGGGATTTATATGTAGGGCAGAAAAAGGAAGGTGTTTTTCAGCACTCTAGCTTTCTGTCCGGAGGGGCTGCAATGGCAGCCGGAAGATTAGTCGCCCACAATGGGGTTCTCGAGGCTATGTGGCCAGACAATGATCACTATCTCCCAACGGTAGACAATTTCAAAGAATTCATTAGCTTCTTGGAAGATCACCAAGTAGACCTAACCAATGTCAAGATTCCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0010119 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

246

Amino Acids

27.7

Weight (kDa)

5.68

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26190 AT2G26190 AT2G26190 AT4G33050 AT4G33050 AT4G33050 AT4G33050 AT4G33050 AT4G33050
fragaria_vesca	FvH4_2g31640 FvH4_2g31640 FvH4_2g31640 FvH4_2g31640
malus_domestica	MD08G1064600.v1.1 MD15G1057300.v1.1
prunus_persica	Prupe.1G409700_v2.0.a1 Prupe.1G409700_v2.0.a1 Prupe.1G409700_v2.0.a1 Prupe.1G409800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0311181
rosa_laevigata	RLG00000010429
rosa_multiflora	Rmu_co8419083.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157930
rosa_rugosa	Rorug06G0386000 Rorug06G0386000
rosa_samantha	Rh6BG510900 Rh6CG516600 Rh6DG503100
rosa_wichuraiana	Rw6G043570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	61
AccI	GTMKAC	2 cut(s)	663, 708
AccIII	TCCGGA	1 cut(s)	569
AclWI	GGATC	2 cut(s)	251, 362
AcoI	YGGCCR	1 cut(s)	632
AcsI	RAATTY	1 cut(s)	677
AfaI	GTAC	3 cut(s)	31, 94, 239
AfiI	CCNNNNNNNGG	3 cut(s)	189, 612, 613
AgsI	TTSAA	4 cut(s)	124, 248, 476, 673
AluBI	AGCT	6 cut(s)	108, 230, 251, 436, 561, 687
AluI	AGCT	6 cut(s)	108, 230, 251, 436, 561, 687
Alw21I	GWGCWC	1 cut(s)	501
Alw26I	GTCTC	1 cut(s)	270
AlwI	GGATC	2 cut(s)	251, 362
Ama87I	CYCGRG	3 cut(s)	338, 349, 620
Aor13HI	TCCGGA	1 cut(s)	569
AoxI	GGCC	2 cut(s)	79, 632
ApeKI	GCWGC	3 cut(s)	179, 578, 587
ApoI	RAATTY	1 cut(s)	677
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	2 cut(s)	329, 692
AvaI	CYCGRG	3 cut(s)	338, 349, 620
AvaII	GGWCC	1 cut(s)	389
BaeGI	GKGCMC	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	634
Bbv12I	GWGCWC	1 cut(s)	501
BbvI	GCAGC	3 cut(s)	166, 565, 599
BccI	CCATC	1 cut(s)	400
BciVI	GTATCC	1 cut(s)	450
BclI	TGATCA	1 cut(s)	643
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	3 cut(s)	168, 227, 558
BfuAI	ACCTGC	1 cut(s)	61
BfuI	GTATCC	1 cut(s)	450
BisI	GCNGC	3 cut(s)	180, 579, 588
BlpI	GCTNAGC	1 cut(s)	500
BlsI	GCNGC	3 cut(s)	181, 580, 589
BmcAI	AGTACT	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	389
BmeT110I	CYCGRG	3 cut(s)	338, 349, 620
BmgT120I	GGNCC	1 cut(s)	389
BmrI	ACTGGG	1 cut(s)	462
BmsI	GCATC	2 cut(s)	274, 384
BmuI	ACTGGG	1 cut(s)	462
Bpu1102I	GCTNAGC	1 cut(s)	500
Bsa29I	ATCGAT	1 cut(s)	357
BsaBI	GATNNNNATC	2 cut(s)	333, 648
BsaJI	CCNNGG	2 cut(s)	82, 350
BsaWI	WCCGGW	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 612, 613
Bse1I	ACTGG	2 cut(s)	245, 457
Bse3DI	GCAATG	2 cut(s)	260, 588
Bse8I	GATNNNNATC	2 cut(s)	333, 648
BseAI	TCCGGA	1 cut(s)	569
BseCI	ATCGAT	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	82, 350
BseGI	GGATG	1 cut(s)	316
BseJI	GATNNNNATC	2 cut(s)	333, 648
BseLI	CCNNNNNNNGG	3 cut(s)	189, 612, 613
BseMI	GCAATG	2 cut(s)	260, 588
BseMII	CTCAG	4 cut(s)	233, 248, 474, 514
BseNI	ACTGG	2 cut(s)	245, 457
BseRI	GAGGAG	1 cut(s)	222
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	3 cut(s)	166, 565, 599
BshFI	GGCC	2 cut(s)	81, 634
BshVI	ATCGAT	1 cut(s)	357
BsiHKAI	GWGCWC	1 cut(s)	501
BsiHKCI	CYCGRG	3 cut(s)	338, 349, 620
BsiSI	CCGG	2 cut(s)	570, 591
BslFI	GGGAC	1 cut(s)	418
BslI	CCNNNNNNNGG	3 cut(s)	189, 612, 613
BsmAI	GTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	418
BsnI	GGCC	2 cut(s)	81, 634
BsoBI	CYCGRG	3 cut(s)	338, 349, 620
Bsp1286I	GDGCHC	2 cut(s)	163, 501
Bsp13I	TCCGGA	1 cut(s)	569
Bsp1407I	TGTACA	1 cut(s)	29
Bsp143I	GATC	5 cut(s)	256, 354, 358, 643, 697
Bsp1720I	GCTNAGC	1 cut(s)	500
Bsp19I	CCATGG	1 cut(s)	82
BspANI	GGCC	2 cut(s)	81, 634
BspCNI	CTCAG	4 cut(s)	232, 247, 475, 513
BspDI	ATCGAT	1 cut(s)	357
BspEI	TCCGGA	1 cut(s)	569
BspMI	ACCTGC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	251, 362
BsrDI	GCAATG	2 cut(s)	260, 588
BsrGI	TGTACA	1 cut(s)	29
BsrI	ACTGG	2 cut(s)	245, 457
BssECI	CCNNGG	2 cut(s)	82, 350
BssMI	GATC	5 cut(s)	256, 354, 358, 643, 697
BssT1I	CCWWGG	1 cut(s)	82
Bst4CI	ACNGT	4 cut(s)	156, 165, 296, 661
BstAUI	TGTACA	1 cut(s)	29
BstDEI	CTNAG	4 cut(s)	219, 234, 483, 500
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	5 cut(s)	259, 357, 361, 646, 700
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	5 cut(s)	256, 354, 358, 643, 697
BstMWI	GCNNNNNNNGC	3 cut(s)	486, 584, 587
BstSLI	GKGCMC	1 cut(s)	163
BstV1I	GCAGC	3 cut(s)	166, 565, 599
Bsu15I	ATCGAT	1 cut(s)	357
BsuI	GTATCC	1 cut(s)	450
BsuRI	GGCC	2 cut(s)	81, 634
BsuTUI	ATCGAT	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	377
BveI	ACCTGC	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	389
ClaI	ATCGAT	1 cut(s)	357
Csp6I	GTAC	3 cut(s)	30, 93, 238
CviAII	CATG	2 cut(s)	83, 439
CviQI	GTAC	3 cut(s)	30, 93, 238
DdeI	CTNAG	4 cut(s)	219, 234, 483, 500
DpnI	GATC	5 cut(s)	258, 356, 360, 645, 699
DpnII	GATC	5 cut(s)	256, 354, 358, 643, 697
EaeI	YGGCCR	1 cut(s)	632
Eco130I	CCWWGG	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	389
Eco88I	CYCGRG	3 cut(s)	338, 349, 620
EcoRI	GAATTC	1 cut(s)	677
EcoT14I	CCWWGG	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	2 cut(s)	86, 442
FaiI	YATR	9 cut(s)	84, 292, 332, 409, 411, 440, 520, 522, 629
FaqI	GGGAC	1 cut(s)	418
FatI	CATG	2 cut(s)	82, 438
FauNDI	CATATG	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	643
FblI	GTMKAC	2 cut(s)	663, 708
Fnu4HI	GCNGC	3 cut(s)	180, 579, 588
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	3 cut(s)	180, 579, 588
FspBI	CTAG	3 cut(s)	168, 227, 558
GluI	GCNGC	3 cut(s)	180, 579, 588
HaeIII	GGCC	2 cut(s)	81, 634
HapII	CCGG	2 cut(s)	570, 591
Hin1II	CATG	2 cut(s)	86, 442
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	1 cut(s)	727
HpaI	GTTAAC	1 cut(s)	466
HpaII	CCGG	2 cut(s)	570, 591
HphI	GGTGA	2 cut(s)	329, 692
Hpy166II	GTNNAC	3 cut(s)	466, 664, 709
Hpy188I	TCNGA	5 cut(s)	99, 130, 222, 397, 484
Hpy188III	TCNNGA	6 cut(s)	338, 340, 570, 620, 724, 731
Hpy8I	GTNNAC	3 cut(s)	466, 664, 709
HpyAV	CCTTC	6 cut(s)	33, 71, 187, 208, 470, 533
HpyCH4III	ACNGT	4 cut(s)	156, 165, 296, 661
HpyCH4IV	ACGT	1 cut(s)	367
HpyF10VI	GCNNNNNNNGC	3 cut(s)	486, 584, 587
HpyF3I	CTNAG	4 cut(s)	219, 234, 483, 500
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	2 cut(s)	86, 442
Kpn2I	TCCGGA	1 cut(s)	569
Ksp22I	TGATCA	1 cut(s)	643
KspAI	GTTAAC	1 cut(s)	466
Kzo9I	GATC	5 cut(s)	256, 354, 358, 643, 697
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	7 cut(s)	56, 226, 430, 438, 583, 604, 648
Lsp1109I	GCAGC	3 cut(s)	166, 565, 599
LweI	GCATC	2 cut(s)	274, 384
MaeI	CTAG	3 cut(s)	168, 227, 558
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	2 cut(s)	8, 150
MalI	GATC	5 cut(s)	258, 356, 360, 645, 699
MboI	GATC	5 cut(s)	256, 354, 358, 643, 697
MboII	GAAGA	3 cut(s)	112, 606, 707
MfeI	CAATTG	1 cut(s)	471
MhlI	GDGCHC	2 cut(s)	163, 501
MlsI	TGGCCA	1 cut(s)	634
MluCI	AATT	5 cut(s)	62, 280, 471, 667, 677
MluNI	TGGCCA	1 cut(s)	634
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	7 cut(s)	124, 243, 313, 345, 393, 566, 616
Mox20I	TGGCCA	1 cut(s)	634
MroI	TCCGGA	1 cut(s)	569
MscI	TGGCCA	1 cut(s)	634
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	2 cut(s)	270, 494
Msp20I	TGGCCA	1 cut(s)	634
MspI	CCGG	2 cut(s)	570, 591
MunI	CAATTG	1 cut(s)	471
MwoI	GCNNNNNNNGC	3 cut(s)	486, 584, 587
NcoI	CCATGG	1 cut(s)	82
NdeI	CATATG	1 cut(s)	409
NdeII	GATC	5 cut(s)	256, 354, 358, 643, 697
NlaIII	CATG	2 cut(s)	86, 442
NmuCI	GTSAC	1 cut(s)	150
PaeR7I	CTCGAG	2 cut(s)	338, 620
PaqCI	CACCTGC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	727
PkrI	GCNGC	3 cut(s)	181, 580, 589
PspPI	GGNCC	1 cut(s)	389
RsaI	GTAC	3 cut(s)	31, 94, 239
RsaNI	GTAC	3 cut(s)	30, 93, 238
RseI	CAYNNNNRTG	2 cut(s)	270, 494
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	3 cut(s)	180, 579, 588
Sau3AI	GATC	5 cut(s)	256, 354, 358, 643, 697
Sau96I	GGNCC	1 cut(s)	389
ScaI	AGTACT	1 cut(s)	239
SduI	GDGCHC	2 cut(s)	163, 501
SfaNI	GCATC	2 cut(s)	274, 384
Sfr274I	CTCGAG	2 cut(s)	338, 620
SinI	GGWCC	1 cut(s)	389
SlaI	CTCGAG	2 cut(s)	338, 620
SmiMI	CAYNNNNRTG	2 cut(s)	270, 494
SmlI	CTYRAG	2 cut(s)	338, 620
SmoI	CTYRAG	2 cut(s)	338, 620
Sse9I	AATT	5 cut(s)	62, 280, 471, 667, 677
SspMI	CTAG	3 cut(s)	168, 227, 558
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	4 cut(s)	156, 165, 296, 661
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	4 cut(s)	60, 339, 357, 621
TasI	AATT	5 cut(s)	62, 280, 471, 667, 677
TatI	WGTACW	3 cut(s)	29, 92, 237
TfiI	GAWTC	1 cut(s)	727
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	1 cut(s)	377
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	3 cut(s)	179, 578, 587
Tsp45I	GTSAC	1 cut(s)	150
TspDTI	ATGAA	2 cut(s)	426, 670
TspRI	CASTG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	1 cut(s)	677
XhoI	CTCGAG	2 cut(s)	338, 620
XmiI	GTMKAC	2 cut(s)	663, 708
XspI	CTAG	3 cut(s)	168, 227, 558
ZrmI	AGTACT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.