Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012283

Physical Location & Seq

Genomic Coordinates Forward (+)

15971109 .. 15972489

Gene Structure 1381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G33100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGGCTTATTGAAGAAAAAAGATTCAACTTCAGCTCGCTCCTCTACTTCTCCCTGCGCCGATTTGCGAAACGCTTACCACAATTGCTTCAACAAATGGTACTCGGAGAAGTTTGTTAAAGGCCAATGGGATAAAGAAGAGTGTGTTGCCGAGTGGAAAAAATACAGAGACTGTCTCTCGGAGAATTTAGATGGTAAGCTTCTCACTCGCATTTTGGAGGTAGATGGGGAGCTGAATCCAACAAAGCAAGCTACTGATTCAAAAGAATCCAGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0203

Protein Analysis

92

Amino Acids

10.54

Weight (kDa)

7.62

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UPF0203	PF05254	14 - 77	1.9e-23	Uncharacterised protein family (UPF0203)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33100
fragaria_vesca	FvH4_2g31430
malus_domestica	MD08G1066900.v1.1 MD08G1067500.v1.1 MD09G1070200.v1.1
prunus_persica	Prupe.1G407800_v2.0.a1
pyrus_communis	pycom08g05610
rosa_chinensis	RchiOBHm_Chr6g0311391 RchiOBHm_Chr7g0222241
rosa_multiflora	Rmu_sc0006915.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157660
rosa_rugosa	Rorug06G0388400
rosa_samantha	Rh6AG502900 Rh6BG513400 Rh6CG519300 Rh6DG505500 Rh7AG348300 Rh7CG365900
rosa_wichuraiana	Rw6G043790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	15
AfaI	GTAC	1 cut(s)	101
AgsI	TTSAA	4 cut(s)	13, 27, 91, 261
AluBI	AGCT	4 cut(s)	35, 199, 232, 251
AluI	AGCT	4 cut(s)	35, 199, 232, 251
Alw26I	GTCTC	2 cut(s)	162, 179
AlwNI	CAGNNNCTG	1 cut(s)	171
AoxI	GGCC	1 cut(s)	121
ApoI	RAATTY	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	59
BccI	CCATC	2 cut(s)	185, 218
BcoDI	GTCTC	2 cut(s)	162, 179
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
Bse1I	ACTGG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	123
BsmAI	GTCTC	2 cut(s)	162, 179
BsnI	GGCC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	123
BspHI	TCATGA	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	37, 249
BstHHI	GCGC	1 cut(s)	59
BstMAI	GTCTC	2 cut(s)	162, 179
BsuRI	GGCC	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	37, 249
CaiI	CAGNNNCTG	1 cut(s)	171
CciI	TCATGA	1 cut(s)	275
CfoI	GCGC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	1 cut(s)	276
CviJI	RGCY	6 cut(s)	6, 35, 123, 199, 232, 251
CviKI_1	RGCY	6 cut(s)	6, 35, 123, 199, 232, 251
CviQI	GTAC	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	15
FaeI	CATG	1 cut(s)	279
FaiI	YATR	1 cut(s)	277
FatI	CATG	1 cut(s)	275
GlaI	GCGC	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	123
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	279
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	4 cut(s)	23, 235, 257, 266
Hpy188I	TCNGA	2 cut(s)	106, 181
Hpy188III	TCNNGA	1 cut(s)	276
HpyCH4III	ACNGT	1 cut(s)	173
Hsp92II	CATG	1 cut(s)	279
HspAI	GCGC	1 cut(s)	57
LmnI	GCTCC	2 cut(s)	44, 229
LpnPI	CCDG	1 cut(s)	67
MboII	GAAGA	2 cut(s)	25, 149
MfeI	CAATTG	1 cut(s)	82
MluCI	AATT	2 cut(s)	82, 184
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	2 cut(s)	52, 211
MseI	TTAA	1 cut(s)	117
MunI	CAATTG	1 cut(s)	82
NlaIII	CATG	1 cut(s)	279
NmeAIII	GCCGAG	1 cut(s)	175
PagI	TCATGA	1 cut(s)	275
PfeI	GAWTC	4 cut(s)	23, 235, 257, 266
PstNI	CAGNNNCTG	1 cut(s)	171
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	117
SetI	ASST	5 cut(s)	37, 201, 222, 234, 253
SgeI	CNNG	7 cut(s)	48, 66, 115, 163, 190, 219, 260
Sse9I	AATT	2 cut(s)	82, 184
TaaI	ACNGT	1 cut(s)	173
TasI	AATT	2 cut(s)	82, 184
TfiI	GAWTC	4 cut(s)	23, 235, 257, 266
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TspDTI	ATGAA	1 cut(s)	264
XapI	RAATTY	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.