FvH4_2g31430

Uncharacterised protein family (UPF0203)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012283
Physical Location & Seq
Reverse (-)
24078758 .. 24080224
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31430.t1

Sequence Viewer

Length: 297 bp
ATGGGGATCCTTCAGAAGAAGAAAAGCTCCTCCTCTTCTCCTTCTTCAACATCGCCTTGTGCCAATCTAAGAGCTGCTTACCACAATTGCTTCAACAGGTGGTATTCGGAGAAGTTTGTAAAGGGTATCTGGGACAAAGAGGAATGTGTTTTGGAGTGGGACAAGTACAAAGCTTGTCTATCTGAACATTTGGAAGATAAACAACTGAGTCGGTTCCTGGAGGCTGAAGGACCTGTGAGCACCAGCATTGGAGTTGATTCCAACACTGCAACCAAAGCCGATGGGGGGCAGTCCTAA

Protein Analysis

99

Amino Acids

10.9

Weight (kDa)

6.71

Isoelectric Point (pI)

68.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0203 PF05254 15 - 75 7.7e-22 Uncharacterised protein family (UPF0203)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33100
fragaria_vesca FvH4_2g31430
malus_domestica MD08G1066900.v1.1 MD08G1067500.v1.1 MD09G1070200.v1.1
prunus_persica Prupe.1G407800_v2.0.a1
pyrus_communis pycom08g05610
rosa_chinensis RchiOBHm_Chr6g0311391 RchiOBHm_Chr7g0222241
rosa_multiflora Rmu_sc0006915.1_g000005
rosa_roxburghii Rroxscaffold_7G00157660
rosa_rugosa Rorug06G0388400
rosa_samantha Rh6AG502900 Rh6BG513400 Rh6CG519300 Rh6DG505500 Rh7AG348300 Rh7CG365900
rosa_wichuraiana Rw6G043790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 2 cut(s) 48, 94
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 3 cut(s) 27, 74, 173
AluI AGCT 3 cut(s) 27, 74, 173
Alw21I GWGCWC 1 cut(s) 242
AlwI GGATC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 230
AvaII GGWCC 1 cut(s) 230
BamHI GGATCC 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 218
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 2 cut(s) 8, 215
BmrFI CCNGG 1 cut(s) 218
BpmI CTGGAG 1 cut(s) 239
Bsc4I CCNNNNNNNGG 1 cut(s) 285
BseBI CCWGG 1 cut(s) 218
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 197
BseRI GAGGAG 2 cut(s) 19, 22
BseXI GCAGC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 242
BslFI GGGAC 2 cut(s) 146, 173
BslI CCNNNNNNNGG 1 cut(s) 285
BsmFI GGGAC 2 cut(s) 146, 173
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 1 cut(s) 6
BspCNI CTCAG 1 cut(s) 198
BspLI GGNNCC 2 cut(s) 8, 215
BspPI GGATC 1 cut(s) 14
BssMI GATC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 40
BstDEI CTNAG 2 cut(s) 68, 206
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BtgZI GCGATG 1 cut(s) 36
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 166
CviJI RGCY 5 cut(s) 27, 74, 173, 224, 278
CviKI_1 RGCY 5 cut(s) 27, 74, 173, 224, 278
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 2 cut(s) 68, 206
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 216
FalI AAGNNNNNCTT 2 cut(s) 61, 93
FaqI GGGAC 2 cut(s) 146, 173
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 239
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 2 cut(s) 208, 257
Hpy188I TCNGA 3 cut(s) 15, 109, 184
HpyAV CCTTC 3 cut(s) 20, 51, 221
HpyCH4V TGCA 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 2 cut(s) 68, 206
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 6 cut(s) 82, 115, 203, 230, 246, 256
Lsp1109I GCAGC 1 cut(s) 61
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 5 cut(s) 27, 28, 31, 36, 206
MfeI CAATTG 1 cut(s) 85
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 1 cut(s) 85
MlyI GAGTC 1 cut(s) 217
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 4 cut(s) 40, 43, 133, 214
MspR9I CCNGG 1 cut(s) 218
MunI CAATTG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 275
NdeII GATC 1 cut(s) 6
NlaIV GGNNCC 2 cut(s) 8, 215
PfeI GAWTC 1 cut(s) 257
PfoI TCCNGGA 1 cut(s) 216
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
PpuMI RGGWCCY 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 2 cut(s) 8, 215
PspPI GGNCC 1 cut(s) 230
PspPPI RGGWCCY 1 cut(s) 230
PsuI RGATCY 1 cut(s) 6
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 242
SetI ASST 5 cut(s) 29, 76, 101, 175, 235
SgeI CNNG 9 cut(s) 69, 109, 142, 175, 186, 229, 230, 245, 255
SinI GGWCC 1 cut(s) 230
Sse9I AATT 1 cut(s) 85
StyD4I CCNGG 1 cut(s) 216
TasI AATT 1 cut(s) 85
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 1 cut(s) 257
TscAI CASTG 1 cut(s) 271
TseI GCWGC 1 cut(s) 74
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.