Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012283

Physical Location & Seq

Genomic Coordinates Reverse (-)

35737721 .. 35738835

Gene Structure 1115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G407800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGGATCCTCACAGACTCACAGAACAAGAGAAGCCCCTCTTCTTCTTCAACATCACCCTGTGCTAATCTCAGAGCTGCTTACCACAATTGTTTCAGCAGGTGGTATTCAGAGAAGTTTGTAAAGGGTCAATGGGACAAAGAAGAATGCGTTTCAGAATGGCAGAAATACAAAGCTTGCCTCTCTCAACATTTGGAAGATAAACAGTTGAGTCGCTTCTTGGAGGCTGAAGGGCCTGTGAGCTCCACCATTGAAGTTGCTTCCTCCAGAACAACCAAAACCGATGACGCTCCGACTGGTTCTTCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0203

Protein Analysis

104

Amino Acids

11.54

Weight (kDa)

6.71

Isoelectric Point (pI)

89.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33100
fragaria_vesca	FvH4_2g31430
malus_domestica	MD08G1066900.v1.1 MD08G1067500.v1.1 MD09G1070200.v1.1
prunus_persica	Prupe.1G407800_v2.0.a1
pyrus_communis	pycom08g05610
rosa_chinensis	RchiOBHm_Chr6g0311391 RchiOBHm_Chr7g0222241
rosa_multiflora	Rmu_sc0006915.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157660
rosa_rugosa	Rorug06G0388400
rosa_samantha	Rh6AG502900 Rh6BG513400 Rh6CG519300 Rh6DG505500 Rh7AG348300 Rh7CG365900
rosa_wichuraiana	Rw6G043790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	90
Acc36I	ACCTGC	1 cut(s)	90
AclWI	GGATC	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	249
AdeI	CACNNNGTG	1 cut(s)	62
AgsI	TTSAA	2 cut(s)	51, 254
AluBI	AGCT	3 cut(s)	77, 176, 243
AluI	AGCT	3 cut(s)	77, 176, 243
Alw21I	GWGCWC	1 cut(s)	245
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	48
BamHI	GGATCC	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	64
BfuAI	ACCTGC	1 cut(s)	90
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	8
BpmI	CTGGAG	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	301
BseXI	GCAGC	1 cut(s)	64
BshFI	GGCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	149
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	8
BspMI	ACCTGC	1 cut(s)	90
BspPI	GGATC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	301
BssMI	GATC	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	2 cut(s)	71, 306
BstKTI	GATC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	235
BveI	ACCTGC	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	1 cut(s)	296
CviJI	RGCY	6 cut(s)	36, 77, 176, 227, 235, 243
CviKI_1	RGCY	6 cut(s)	36, 77, 176, 227, 235, 243
DdeI	CTNAG	2 cut(s)	71, 306
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
DraIII	CACNNNGTG	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	245
Eco53kI	GAGCTC	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	249
EcoICRI	GAGCTC	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	233
EcoT38I	GRGCYC	1 cut(s)	245
FalI	AAGNNNNNCTT	2 cut(s)	25, 57
FaqI	GGGAC	1 cut(s)	149
Fnu4HI	GCNGC	1 cut(s)	78
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	250
HaeIII	GGCC	1 cut(s)	235
HgaI	GACGC	1 cut(s)	296
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	2 cut(s)	17, 211
HphI	GGTGA	1 cut(s)	48
Hpy188I	TCNGA	4 cut(s)	74, 112, 157, 294
Hpy188III	TCNNGA	1 cut(s)	267
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	207
HpyF3I	CTNAG	2 cut(s)	71, 306
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	2 cut(s)	248, 295
LpnPI	CCDG	5 cut(s)	73, 85, 249, 280, 282
Lsp1109I	GCAGC	1 cut(s)	64
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	6 cut(s)	33, 36, 39, 155, 209, 294
MfeI	CAATTG	1 cut(s)	88
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	1 cut(s)	88
MlyI	GAGTC	2 cut(s)	11, 220
MnlI	CCTC	5 cut(s)	20, 49, 191, 217, 274
MunI	CAATTG	1 cut(s)	88
Mva1269I	GAATGC	1 cut(s)	152
NdeII	GATC	1 cut(s)	6
NlaIV	GGNNCC	1 cut(s)	8
PaqCI	CACCTGC	1 cut(s)	90
PctI	GAATGC	1 cut(s)	152
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	2 cut(s)	11, 219
PpsI	GAGTC	2 cut(s)	11, 219
Psp124BI	GAGCTC	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	8
PspPI	GGNCC	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	6
SacI	GAGCTC	1 cut(s)	245
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	2 cut(s)	11, 220
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	4 cut(s)	79, 104, 178, 245
SgeI	CNNG	7 cut(s)	40, 72, 112, 189, 232, 248, 279
Sse9I	AATT	1 cut(s)	88
SstI	GAGCTC	1 cut(s)	245
TaaI	ACNGT	1 cut(s)	207
TasI	AATT	1 cut(s)	88
TseI	GCWGC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.