Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0012283

Physical Location & Seq

Genomic Coordinates Forward (+)

67001110 .. 67001657

Gene Structure 548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G043790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGGGATACTTCAGAACAAGAAAACCTCCTCTTCTCCTTCCTCAACATCGCCTTGTGCCAATCTCAGAGCTGCTTACCACAACTGCTTCAACAGGTGGTATTCAGAGAAGTTTGTAAAGGGTAATTGGGACAAAGAGGAATGCGTTTCAGAGTGGGAGAAATACAAAGCTTGTCTTTCTGAACATTTGGAAGATAAACAACTGAGTCGGTTCTTGGAGGCTGAAGCACCTGTGAGCACCACCACTGCAACCAAAGCCGATGGCGGGCGGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0203

Protein Analysis

91

Amino Acids

10.27

Weight (kDa)

7.66

Isoelectric Point (pI)

76.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UPF0203	PF05254	14 - 75	4.6e-23	Uncharacterised protein family (UPF0203)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33100
fragaria_vesca	FvH4_2g31430
malus_domestica	MD08G1066900.v1.1 MD08G1067500.v1.1 MD09G1070200.v1.1
prunus_persica	Prupe.1G407800_v2.0.a1
pyrus_communis	pycom08g05610
rosa_chinensis	RchiOBHm_Chr6g0311391 RchiOBHm_Chr7g0222241
rosa_multiflora	Rmu_sc0006915.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157660
rosa_rugosa	Rorug06G0388400
rosa_samantha	Rh6AG502900 Rh6BG513400 Rh6CG519300 Rh6DG505500 Rh7AG348300 Rh7CG365900
rosa_wichuraiana	Rw6G043790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	264, 268
AcuI	CTGAAG	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	264
AgsI	TTSAA	1 cut(s)	91
AluBI	AGCT	2 cut(s)	71, 170
AluI	AGCT	2 cut(s)	71, 170
Alw21I	GWGCWC	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	270
AvaII	GGWCC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	1 cut(s)	254
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	79, 194
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	239
BspACI	CCGC	2 cut(s)	264, 268
BspCNI	CTCAG	2 cut(s)	78, 195
Bst6I	CTCTTC	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	2 cut(s)	65, 203
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	58
BtgZI	GCGATG	1 cut(s)	33
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	270
CviJI	RGCY	4 cut(s)	71, 170, 221, 257
CviKI_1	RGCY	4 cut(s)	71, 170, 221, 257
DdeI	CTNAG	2 cut(s)	65, 203
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	243
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	1 cut(s)	143
FauI	CCCGC	1 cut(s)	257
Fnu4HI	GCNGC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	72
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	1 cut(s)	205
Hpy188I	TCNGA	5 cut(s)	15, 68, 106, 151, 181
HpyAV	CCTTC	1 cut(s)	48
HpyCH4V	TGCA	1 cut(s)	248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	65, 203
LpnPI	CCDG	2 cut(s)	79, 243
Lsp1109I	GCAGC	1 cut(s)	58
MboII	GAAGA	2 cut(s)	24, 203
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	214
MnlI	CCTC	5 cut(s)	37, 40, 52, 130, 211
Mva1269I	GAATGC	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	254
PctI	GAATGC	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	270
SatI	GCNGC	1 cut(s)	72
Sau96I	GGNCC	1 cut(s)	270
SchI	GAGTC	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	239
SetI	ASST	5 cut(s)	29, 73, 98, 172, 232
SgeI	CNNG	6 cut(s)	31, 66, 106, 183, 226, 242
SinI	GGWCC	1 cut(s)	270
Sse9I	AATT	1 cut(s)	124
SsiI	CCGC	2 cut(s)	264, 268
TasI	AATT	1 cut(s)	124
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	1 cut(s)	71
TspRI	CASTG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.