MD08G1066900.v1.1

Uncharacterised protein family (UPF0203)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0012283
Physical Location & Seq
Forward (+)
5357785 .. 5359310
1526 bp
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UTR
Exon/CDS
Intron
MD08G1066900.v1.1.491

Sequence Viewer

Length: 270 bp
ATGGGGATCATCACCGATTCACGGAACAAGAAGAAATCTTCTTCTTCTTCCACTTCTCCCTGTGCAAAACTCAGAGACGCCTACCACAATTGCTTCACCAGGTGGTACTCGGAGAAGTTTGTGAAGGGCCAATGGGACAAGGAGGATTGCGTTTCAGAGTGGCAGAAATACAAGGCCTGCCTCGCCGAACATTTGGAAGATAAGCAGCTGAGTCGCTTCTTAGAGGCTAAAGGCAATGTGAACTCCACCACCACTGACGGTGGTGGCTAA

Protein Analysis

90

Amino Acids

10.12

Weight (kDa)

8.71

Isoelectric Point (pI)

56.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0203 PF05254 16 - 79 3.7e-22 Uncharacterised protein family (UPF0203)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33100
fragaria_vesca FvH4_2g31430
malus_domestica MD08G1066900.v1.1 MD08G1067500.v1.1 MD09G1070200.v1.1
prunus_persica Prupe.1G407800_v2.0.a1
pyrus_communis pycom08g05610
rosa_chinensis RchiOBHm_Chr6g0311391 RchiOBHm_Chr7g0222241
rosa_multiflora Rmu_sc0006915.1_g000005
rosa_roxburghii Rroxscaffold_7G00157660
rosa_rugosa Rorug06G0388400
rosa_samantha Rh6AG502900 Rh6BG513400 Rh6CG519300 Rh6DG505500 Rh7AG348300 Rh7CG365900
rosa_wichuraiana Rw6G043790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 14
AcyI GRCGYC 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 102
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 21
AjnI CCWGG 1 cut(s) 98
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 1 cut(s) 14
AoxI GGCC 2 cut(s) 127, 174
ApeKI GCWGC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 4, 88
BbvI GCAGC 1 cut(s) 217
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 69
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 100
BsaHI GRCGYC 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 21
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 2 cut(s) 85, 200
BseXI GCAGC 1 cut(s) 217
BshFI GGCC 2 cut(s) 129, 176
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 2 cut(s) 129, 176
Bsp143I GATC 1 cut(s) 6
BspANI GGCC 2 cut(s) 129, 176
BspCNI CTCAG 2 cut(s) 84, 201
BspPI GGATC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 241
BssMI GATC 1 cut(s) 6
BssNI GRCGYC 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 260
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 3 cut(s) 71, 209, 220
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 217
BsuRI GGCC 2 cut(s) 129, 176
BtsIMutI CAGTG 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 127
CseI GACGC 1 cut(s) 86
CsiI ACCWGGT 1 cut(s) 98
Csp6I GTAC 1 cut(s) 106
CviJI RGCY 5 cut(s) 129, 176, 208, 227, 267
CviKI_1 RGCY 5 cut(s) 129, 176, 208, 227, 267
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 3 cut(s) 71, 209, 220
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
DraIII CACNNNGTG 1 cut(s) 102
Eco147I AGGCCT 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 98
Esp3I CGTCTC 1 cut(s) 69
FaqI GGGAC 1 cut(s) 149
Fnu4HI GCNGC 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 206
GluI GCNGC 1 cut(s) 206
HaeIII GGCC 2 cut(s) 129, 176
HgaI GACGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 78
HinfI GANTC 2 cut(s) 17, 211
HphI GGTGA 2 cut(s) 4, 88
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 3 cut(s) 74, 112, 157
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4V TGCA 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 3 cut(s) 71, 209, 220
Hsp92I GRCGYC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 6
LpnPI CCDG 4 cut(s) 73, 85, 112, 190
Lsp1109I GCAGC 1 cut(s) 217
MabI ACCWGGT 1 cut(s) 98
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 6 cut(s) 30, 33, 36, 39, 43, 209
MfeI CAATTG 1 cut(s) 88
MluCI AATT 1 cut(s) 88
MlyI GAGTC 1 cut(s) 220
MnlI CCTC 3 cut(s) 136, 191, 217
MspA1I CMGCKG 1 cut(s) 208
MspR9I CCNGG 1 cut(s) 100
MunI CAATTG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 100
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 1 cut(s) 6
PceI AGGCCT 1 cut(s) 176
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 207
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 98
PspGI CCWGG 1 cut(s) 98
PspPI GGNCC 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 208
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 100
SetI ASST 2 cut(s) 104, 210
SexAI ACCWGGT 1 cut(s) 98
Sse9I AATT 1 cut(s) 88
SseBI AGGCCT 1 cut(s) 176
StuI AGGCCT 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 98
TaaI ACNGT 1 cut(s) 260
TasI AATT 1 cut(s) 88
TfiI GAWTC 1 cut(s) 17
TscAI CASTG 1 cut(s) 259
TseI GCWGC 1 cut(s) 205
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.