Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012283

Physical Location & Seq

Genomic Coordinates Reverse (-)

1400392 .. 1401129

Gene Structure 738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00157660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGGGATCCTTCAGAACAAGAGAACCTCCTCATCTTCTCCTTCCTCAACATCGCCTTGCGCCAATCTCAGAGCTGCTTACCACAACTGCTTCAACAGGTGGTATTCAGAGAAGTTTGTGAAGGGTAATTGGGACAAAGAGGAATGCGTTTCGGAATGGGAGAAATACAAGGCTTGTCTTTCTGAACATTTGGAAGATAAACAACTGAGTCGGTTCTTGGAGGCTGAAGGACCTGTGAGCACCATCACTGCAACCAAAACCGATGGCGGGCGGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0203

Protein Analysis

92

Amino Acids

10.42

Weight (kDa)

7.66

Isoelectric Point (pI)

77.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UPF0203	PF05254	15 - 75	3.9e-23	Uncharacterised protein family (UPF0203)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33100
fragaria_vesca	FvH4_2g31430
malus_domestica	MD08G1066900.v1.1 MD08G1067500.v1.1 MD09G1070200.v1.1
prunus_persica	Prupe.1G407800_v2.0.a1
pyrus_communis	pycom08g05610
rosa_chinensis	RchiOBHm_Chr6g0311391 RchiOBHm_Chr7g0222241
rosa_multiflora	Rmu_sc0006915.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157660
rosa_rugosa	Rorug06G0388400
rosa_samantha	Rh6AG502900 Rh6BG513400 Rh6CG519300 Rh6DG505500 Rh7AG348300 Rh7CG365900
rosa_wichuraiana	Rw6G043790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	267, 271
AclWI	GGATC	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw21I	GWGCWC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	272
ApeKI	GCWGC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	230, 273
AvaII	GGWCC	1 cut(s)	230
BamHI	GGATCC	1 cut(s)	6
Bbv12I	GWGCWC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	2 cut(s)	251, 257
BisI	GCNGC	2 cut(s)	75, 272
BlsI	GCNGC	2 cut(s)	76, 273
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	230, 273
BmiI	GGNNCC	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	82, 197
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	61
BshFI	GGCC	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	1 cut(s)	6
BspACI	CCGC	2 cut(s)	267, 271
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	2 cut(s)	81, 198
BspLI	GGNNCC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	14
BssMI	GATC	1 cut(s)	6
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	2 cut(s)	68, 206
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	274
BtgZI	GCGATG	1 cut(s)	36
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	269
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	230, 273
CviJI	RGCY	4 cut(s)	74, 173, 224, 274
CviKI_1	RGCY	4 cut(s)	74, 173, 224, 274
DdeI	CTNAG	2 cut(s)	68, 206
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	230
FaqI	GGGAC	1 cut(s)	146
FauI	CCCGC	1 cut(s)	260
Fnu4HI	GCNGC	2 cut(s)	75, 272
Fsp4HI	GCNGC	2 cut(s)	75, 272
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	2 cut(s)	75, 272
HaeIII	GGCC	1 cut(s)	274
HhaI	GCGC	1 cut(s)	62
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HinfI	GANTC	1 cut(s)	208
Hpy188I	TCNGA	5 cut(s)	15, 71, 109, 154, 184
HpyAV	CCTTC	4 cut(s)	20, 51, 115, 221
HpyCH4V	TGCA	1 cut(s)	251
HpyF3I	CTNAG	2 cut(s)	68, 206
HspAI	GCGC	1 cut(s)	60
Kzo9I	GATC	1 cut(s)	6
LpnPI	CCDG	2 cut(s)	82, 246
Lsp1109I	GCAGC	1 cut(s)	61
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	2 cut(s)	27, 206
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	217
MnlI	CCTC	5 cut(s)	37, 40, 55, 133, 214
Mva1269I	GAATGC	1 cut(s)	149
NdeII	GATC	1 cut(s)	6
NlaIV	GGNNCC	1 cut(s)	8
PctI	GAATGC	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	76, 273
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
PpuMI	RGGWCCY	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	8
PspPI	GGNCC	2 cut(s)	230, 273
PspPPI	RGGWCCY	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	6
SatI	GCNGC	2 cut(s)	75, 272
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	2 cut(s)	230, 273
SchI	GAGTC	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	4 cut(s)	29, 76, 101, 235
SgeI	CNNG	7 cut(s)	31, 69, 109, 181, 186, 229, 245
SinI	GGWCC	1 cut(s)	230
Sse9I	AATT	1 cut(s)	127
SsiI	CCGC	2 cut(s)	267, 271
TasI	AATT	1 cut(s)	127
TauI	GCSGC	1 cut(s)	274
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	1 cut(s)	74
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.