Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0012283

Physical Location & Seq

Genomic Coordinates Forward (+)

5380164 .. 5380678

Gene Structure 515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1067500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGGGATCATCACCGATTCACAGAACAAGAAGAAACCTTCTTCTTCTTCCACTTCTCCCTGTGCAAAACTCAGAGATGCCTACCACAATTGCTTCACCAAGTGGTACTCGAAGAAGTTTGTGAAGGGCCAATGGGACAAGGAGGATTGCGTTTCAGAGTGGCAAAATTACAAGGCCTGCCTTGCCGAACATTTGGAAGATAAGCAGCTGAGTCGCTTCTTAGAGGCTGAAGGCAATGTGAACTCCACCACCACTGACGGTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0203

Protein Analysis

89

Amino Acids

10.0

Weight (kDa)

7.65

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX6B	PF02297	11 - 66	6.1e-06	Cytochrome oxidase c subunit VIb
UPF0203	PF05254	16 - 79	1.7e-21	Uncharacterised protein family (UPF0203)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33100
fragaria_vesca	FvH4_2g31430
malus_domestica	MD08G1066900.v1.1 MD08G1067500.v1.1 MD09G1070200.v1.1
prunus_persica	Prupe.1G407800_v2.0.a1
pyrus_communis	pycom08g05610
rosa_chinensis	RchiOBHm_Chr6g0311391 RchiOBHm_Chr7g0222241
rosa_multiflora	Rmu_sc0006915.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157660
rosa_rugosa	Rorug06G0388400
rosa_samantha	Rh6AG502900 Rh6BG513400 Rh6CG519300 Rh6DG505500 Rh7AG348300 Rh7CG365900
rosa_wichuraiana	Rw6G043790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	249
AdeI	CACNNNGTG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	107
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	2 cut(s)	127, 174
ApeKI	GCWGC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	2 cut(s)	4, 88
BbvI	GCAGC	1 cut(s)	217
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	127
BmsI	GCATC	1 cut(s)	67
Bse3DI	GCAATG	1 cut(s)	241
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	2 cut(s)	85, 200
BseXI	GCAGC	1 cut(s)	217
BshFI	GGCC	2 cut(s)	129, 176
BslFI	GGGAC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	129, 176
Bsp143I	GATC	1 cut(s)	6
BspANI	GGCC	2 cut(s)	129, 176
BspCNI	CTCAG	2 cut(s)	84, 201
BspPI	GGATC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	241
BssMI	GATC	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	3 cut(s)	71, 209, 220
BstKTI	GATC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	129, 176
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	106
CviJI	RGCY	5 cut(s)	129, 176, 208, 227, 264
CviKI_1	RGCY	5 cut(s)	129, 176, 208, 227, 264
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	3 cut(s)	71, 209, 220
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
DraIII	CACNNNGTG	1 cut(s)	102
Eco147I	AGGCCT	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	249
FaqI	GGGAC	1 cut(s)	149
Fnu4HI	GCNGC	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	206
GluI	GCNGC	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	129, 176
HinfI	GANTC	2 cut(s)	17, 211
HphI	GGTGA	2 cut(s)	4, 88
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	74, 157
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	3 cut(s)	48, 118, 224
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	3 cut(s)	71, 209, 220
Kzo9I	GATC	1 cut(s)	6
LpnPI	CCDG	2 cut(s)	73, 190
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	67
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	6 cut(s)	33, 36, 39, 43, 124, 209
MfeI	CAATTG	1 cut(s)	88
MluCI	AATT	2 cut(s)	88, 166
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	2 cut(s)	136, 217
MspA1I	CMGCKG	1 cut(s)	208
MunI	CAATTG	1 cut(s)	88
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeII	GATC	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	207
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	127
PvuII	CAGCTG	1 cut(s)	208
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	220
SetI	ASST	2 cut(s)	40, 210
SfaNI	GCATC	1 cut(s)	67
SgeI	CNNG	8 cut(s)	40, 72, 112, 121, 151, 184, 189, 194
Sse9I	AATT	2 cut(s)	88, 166
SseBI	AGGCCT	1 cut(s)	176
StuI	AGGCCT	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	260
TaqI	TCGA	1 cut(s)	110
TasI	AATT	2 cut(s)	88, 166
TfiI	GAWTC	1 cut(s)	17
TscAI	CASTG	1 cut(s)	259
TseI	GCWGC	1 cut(s)	205
TspRI	CASTG	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.