Rh7AG348300

Uncharacterised protein family (UPF0203)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0012283
Physical Location & Seq
Forward (+)
44228646 .. 44229434
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG348300.1

Sequence Viewer

Length: 279 bp
ATGGGGATCCTTCAGAACAAGAAAACCTCCTCCTCTTCTCCTTCTTCAACATCGCCTTGCGCCAATCTCAGAGCTGCTTACCACAACTGCTTCAACAGGTGGTATTCGGAGAAGTTTGTAAAGGGTAATTGGGACAAAGAGGAATGCGTTTCGGAGTGGGAGAAATACAAAGCTTGTCTATCTGAACATTTGGAAGATAAACAACTGTGTCGGTTCTTGGAGGCTGAAGGACCTGTGAGCACCACCACTGCAACCAAAGCCCATGGCGGGCGGTCCTAA

Protein Analysis

92

Amino Acids

10.38

Weight (kDa)

8.3

Isoelectric Point (pI)

72.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0203 PF05254 15 - 75 4.2e-22 Uncharacterised protein family (UPF0203)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33100
fragaria_vesca FvH4_2g31430
malus_domestica MD08G1066900.v1.1 MD08G1067500.v1.1 MD09G1070200.v1.1
prunus_persica Prupe.1G407800_v2.0.a1
pyrus_communis pycom08g05610
rosa_chinensis RchiOBHm_Chr6g0311391 RchiOBHm_Chr7g0222241
rosa_multiflora Rmu_sc0006915.1_g000005
rosa_roxburghii Rroxscaffold_7G00157660
rosa_rugosa Rorug06G0388400
rosa_samantha Rh6AG502900 Rh6BG513400 Rh6CG519300 Rh6DG505500 Rh7AG348300 Rh7CG365900
rosa_wichuraiana Rw6G043790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 267, 271
AclWI GGATC 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 2 cut(s) 48, 94
AluBI AGCT 2 cut(s) 74, 173
AluI AGCT 2 cut(s) 74, 173
Alw21I GWGCWC 1 cut(s) 242
AlwI GGATC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 74
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 2 cut(s) 230, 273
AvaII GGWCC 2 cut(s) 230, 273
BamHI GGATCC 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 61
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme18I GGWCC 2 cut(s) 230, 273
BmgT120I GGNCC 2 cut(s) 230, 273
BmiI GGNNCC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 262
Bsc4I CCNNNNNNNGG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 82
BseRI GAGGAG 2 cut(s) 19, 22
BseXI GCAGC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 242
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 146
BsmI GAATGC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 1 cut(s) 6
Bsp19I CCATGG 1 cut(s) 262
BspACI CCGC 2 cut(s) 267, 271
BspCNI CTCAG 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 8
BspPI GGATC 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 269
BstDEI CTNAG 1 cut(s) 68
BstDSI CCRYGG 1 cut(s) 262
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BtgI CCRYGG 1 cut(s) 262
BtgZI GCGATG 1 cut(s) 36
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 269
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 2 cut(s) 230, 273
CviAII CATG 1 cut(s) 263
CviJI RGCY 4 cut(s) 74, 173, 224, 260
CviKI_1 RGCY 4 cut(s) 74, 173, 224, 260
DdeI CTNAG 1 cut(s) 68
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 262
Eco47I GGWCC 2 cut(s) 230, 273
Eco57I CTGAAG 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 1 cut(s) 266
FaiI YATR 1 cut(s) 264
FaqI GGGAC 1 cut(s) 146
FatI CATG 1 cut(s) 262
FauI CCCGC 1 cut(s) 260
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
GlaI GCGC 1 cut(s) 61
GluI GCNGC 1 cut(s) 75
HhaI GCGC 1 cut(s) 62
Hin1II CATG 1 cut(s) 266
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 171
Hpy188I TCNGA 5 cut(s) 15, 71, 109, 154, 184
HpyAV CCTTC 3 cut(s) 20, 51, 221
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 1 cut(s) 68
Hsp92II CATG 1 cut(s) 266
HspAI GCGC 1 cut(s) 60
Kzo9I GATC 1 cut(s) 6
LpnPI CCDG 2 cut(s) 82, 246
Lsp1109I GCAGC 1 cut(s) 61
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 3 cut(s) 27, 36, 206
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 1 cut(s) 127
MnlI CCTC 5 cut(s) 37, 40, 43, 133, 214
Mva1269I GAATGC 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 257
NcoI CCATGG 1 cut(s) 262
NdeII GATC 1 cut(s) 6
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 1 cut(s) 8
PctI GAATGC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 76
PpuMI RGGWCCY 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 8
PspPI GGNCC 2 cut(s) 230, 273
PspPPI RGGWCCY 1 cut(s) 230
PsuI RGATCY 1 cut(s) 6
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 2 cut(s) 230, 273
SduI GDGCHC 1 cut(s) 242
SetI ASST 5 cut(s) 29, 76, 101, 175, 235
SgeI CNNG 7 cut(s) 31, 69, 109, 186, 229, 245, 275
SinI GGWCC 2 cut(s) 230, 273
Sse9I AATT 1 cut(s) 127
SsiI CCGC 2 cut(s) 267, 271
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 207
TasI AATT 1 cut(s) 127
TscAI CASTG 1 cut(s) 253
TseI GCWGC 1 cut(s) 74
TspRI CASTG 1 cut(s) 253
VpaK11BI GGWCC 2 cut(s) 230, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.