AT4G33360

NmrA-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012936
Physical Location & Seq
Reverse (-)
16067672 .. 16069374
1703 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33360.1

Sequence Viewer

Length: 1035 bp
ATGGGCCCAAAGATGCCCAACACAGAAACAGAAAATATGAAAATATTAGTCACCGGCTCTACTGGTTACTTAGGCGCACGACTCTGCCACGTTCTCCTCCGTCGTGGCCACTCCGTACGTGCATTGGTCCGCCGCACCAGCGATCTCTCTGACTTACCTCCAGAAGTTGAGCTCGCCTATGGAGACGTAACGGATTACCGTTCTCTAACGGATGCTTGCTCCGGTTGCGATATCGTTTTCCACGCCGCAGCTTTAGTTGAGCCTTGGCTTCCTGACCCATCTCGATTCATCTCAGTCAACGTTGGTGGACTGAAGAATGTCTTGGAAGCTGTAAAGGAGACGAAGACCGTGCAGAAGATTATCTACACTTCTTCCTTCTTCGCTCTTGGATCTACCGATGGATCTGTTGCTAATGAGAATCAAGTTCATAATGAGAGGTTCTTCTGCACTGAGTATGAGAGATCCAAGGCTGTTGCTGATAAGATGGCTTTGAATGCTGCTTCTGAAGGTGTGCCGATAATTTTGCTGTATCCTGGTGTTATTTTTGGTCCAGGCAAGCTCACTTCAGCCAATATGGTTGCTAGAATGTTGATCGAGCGCTTTAACGGGAGGTTGCCTGGATATATTGGCTCTGGGACGGATAGATACTCCTTCAGCCATGTTGATGATGTTGTGGAGGGTCATGTTGCTGCAATGGAAAAAGGTAGGCTTGGTGAAAGATACTTACTCACTGGGGAAAATGCTTCTTTCAAGCTTGTCTTTGACATGGCTGCACTGATTACTGGAACCAAAAAGCCAAACTTTAGCATTCCATTATGGGCCATCAACGCATACGGATGGTTATCTGTTTTAATCTCTCGGGTTACAGGAAAGCTTCCACTTATCAGTCCTCCGACAGTGACAGTGCTGAGACATCAGTGGTCATACTCTTGTGATAAGGCTAAGCTGGAACTTGGTTATAACCCTCGAAGCCTAAAGGAAGGATTGGAGGAGATGCTCCCTTGGTTGAAGAGTCTGGGCGTCATTCACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko00909 ko01130 map00900 map00909 map01130
Pfam Domains
Protein Families
Epimerase

Protein Analysis

344

Amino Acids

37.86

Weight (kDa)

8.18

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 12 - 132 1.6e-14 NmrA-like family
RmlD_sub_bind PF04321 13 - 162 2.4e-06 RmlD substrate binding domain
Epimerase PF01370 15 - 241 1.1e-37 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 15 - 125 2e-08 Polysaccharide biosynthesis protein
3Beta_HSD PF01073 16 - 232 8.9e-23 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 16 - 264 1.6e-20 GDP-mannose 4,6 dehydratase
NAD_binding_10 PF13460 19 - 161 3.7e-17 NAD(P)H-binding
NAD_binding_4 PF07993 71 - 225 1e-14 Male sterility protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33360 AT4G33360
fragaria_vesca FvH4_2g34590
malus_domestica MD08G1103100.v1.1
prunus_persica Prupe.1G438100_v2.0.a1
pyrus_communis pycom08g08450
rosa_chinensis RchiOBHm_Chr4g0409851 RchiOBHm_Chr5g0013111 RchiOBHm_Chr6g0307561 RchiOBHm_Chr6g0307711
rosa_laevigata RLG00000010706
rosa_multiflora Rmu_sc0000031.1_g000026
rosa_rugosa Rorug06G0359800
rosa_samantha Rh6AG469200 Rh6BG479800 Rh6CG485400 Rh6DG472000
rosa_wichuraiana Rw6G040970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 960
AciI CCGC 3 cut(s) 130, 133, 246
AclI AACGTT 1 cut(s) 300
AclWI GGATC 3 cut(s) 397, 409, 456
AcoI YGGCCR 1 cut(s) 106
AcuI CTGAAG 4 cut(s) 332, 525, 549, 637
AcyI GRCGYC 1 cut(s) 1020
AfaI GTAC 1 cut(s) 117
AfeI AGCGCT 1 cut(s) 599
AgsI TTSAA 3 cut(s) 493, 751, 1009
AjnI CCWGG 3 cut(s) 532, 550, 616
AjuI GAANNNNNNNTTGG 2 cut(s) 305, 337
AluBI AGCT 7 cut(s) 172, 251, 329, 559, 754, 874, 946
AluI AGCT 7 cut(s) 172, 251, 329, 559, 754, 874, 946
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 3 cut(s) 177, 332, 904
AlwI GGATC 3 cut(s) 397, 409, 456
Ama87I CYCGRG 1 cut(s) 858
Aor51HI AGCGCT 1 cut(s) 599
AoxI GGCC 3 cut(s) 4, 106, 819
ApaI GGGCCC 1 cut(s) 8
ApeKI GCWGC 4 cut(s) 248, 497, 689, 770
AspLEI GCGC 2 cut(s) 77, 600
AspS9I GGNCC 5 cut(s) 4, 5, 127, 548, 819
AsuHPI GGTGA 2 cut(s) 43, 725
AvaI CYCGRG 1 cut(s) 858
AvaII GGWCC 2 cut(s) 127, 548
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 108
BanII GRGCYC 2 cut(s) 8, 174
BarI GAAGNNNNNNTAC 2 cut(s) 347, 379
BbsI GAAGAC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 4 cut(s) 260, 484, 676, 757
BccI CCATC 5 cut(s) 286, 392, 478, 830, 831
BcgI CGANNNNNNTGC 4 cut(s) 331, 365, 505, 539
BciT130I CCWGG 3 cut(s) 534, 552, 618
BciVI GTATCC 1 cut(s) 540
BcoDI GTCTC 3 cut(s) 177, 332, 904
BfaI CTAG 1 cut(s) 582
BfoI RGCGCY 1 cut(s) 601
BfuI GTATCC 1 cut(s) 540
BisI GCNGC 6 cut(s) 133, 246, 249, 498, 690, 771
BlpI GCTNAGC 1 cut(s) 942
BlsI GCNGC 6 cut(s) 134, 247, 250, 499, 691, 772
Bme1390I CCNGG 3 cut(s) 534, 552, 618
Bme18I GGWCC 2 cut(s) 127, 548
BmeT110I CYCGRG 1 cut(s) 858
BmgT120I GGNCC 5 cut(s) 4, 5, 127, 548, 819
BmiI GGNNCC 2 cut(s) 6, 787
BmrFI CCNGG 3 cut(s) 534, 552, 618
BmrI ACTGGG 1 cut(s) 741
BmsI GCATC 3 cut(s) 3, 202, 984
BmuI ACTGGG 1 cut(s) 741
BpiI GAAGAC 1 cut(s) 350
BpmI CTGGAG 1 cut(s) 144
Bpu1102I GCTNAGC 1 cut(s) 942
BsaAI YACGTR 1 cut(s) 119
BsaBI GATNNNNATC 1 cut(s) 841
BsaHI GRCGYC 1 cut(s) 1020
BsaJI CCNNGG 3 cut(s) 263, 465, 1001
BsaWI WCCGGW 1 cut(s) 221
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 3 cut(s) 67, 736, 787
Bse3DI GCAATG 1 cut(s) 699
Bse8I GATNNNNATC 1 cut(s) 841
BseBI CCWGG 3 cut(s) 534, 552, 618
BseDI CCNNGG 3 cut(s) 263, 465, 1001
BseGI GGATG 2 cut(s) 217, 842
BseJI GATNNNNATC 1 cut(s) 841
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 3 cut(s) 306, 441, 899
BseNI ACTGG 3 cut(s) 67, 736, 787
BseRI GAGGAG 2 cut(s) 86, 1004
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 4 cut(s) 260, 484, 676, 757
BsgI GTGCAG 3 cut(s) 371, 430, 756
BshFI GGCC 3 cut(s) 6, 108, 821
BsiHKAI GWGCWC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 858
BsiSI CCGG 2 cut(s) 54, 222
BsiWI CGTACG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 649
BsmAI GTCTC 3 cut(s) 177, 332, 904
BsmBI CGTCTC 2 cut(s) 177, 332
BsmFI GGGAC 1 cut(s) 649
BsmI GAATGC 2 cut(s) 499, 807
BsnI GGCC 3 cut(s) 6, 108, 821
BsoBI CYCGRG 1 cut(s) 858
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 2 cut(s) 8, 174
Bsp143I GATC 5 cut(s) 142, 389, 401, 461, 591
Bsp1720I GCTNAGC 1 cut(s) 942
BspACI CCGC 3 cut(s) 130, 133, 246
BspANI GGCC 3 cut(s) 6, 108, 821
BspCNI CTCAG 3 cut(s) 305, 442, 900
BspLI GGNNCC 2 cut(s) 6, 787
BspPI GGATC 3 cut(s) 397, 409, 456
BsrDI GCAATG 1 cut(s) 699
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 3 cut(s) 67, 736, 787
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 3 cut(s) 263, 465, 1001
BssMI GATC 5 cut(s) 142, 389, 401, 461, 591
BssNI GRCGYC 1 cut(s) 1020
BssT1I CCWWGG 3 cut(s) 263, 465, 1001
Bst2UI CCWGG 3 cut(s) 534, 552, 618
Bst4CI ACNGT 4 cut(s) 200, 349, 898, 904
Bst6I CTCTTC 1 cut(s) 1004
BstACI GRCGYC 1 cut(s) 1020
BstBAI YACGTR 1 cut(s) 119
BstC8I GCNNGC 3 cut(s) 174, 217, 557
BstDEI CTNAG 5 cut(s) 70, 292, 450, 908, 942
BstF5I GGATG 2 cut(s) 217, 842
BstH2I RGCGCY 1 cut(s) 601
BstHHI GCGC 2 cut(s) 77, 600
BstKTI GATC 5 cut(s) 145, 392, 404, 464, 594
BstMAI GTCTC 3 cut(s) 177, 332, 904
BstMBI GATC 5 cut(s) 142, 389, 401, 461, 591
BstMWI GCNNNNNNNGC 4 cut(s) 138, 225, 494, 827
BstNI CCWGG 3 cut(s) 534, 552, 618
BstSCI CCNGG 3 cut(s) 532, 550, 616
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 4 cut(s) 260, 484, 676, 757
BstV2I GAAGAC 1 cut(s) 350
BstX2I RGATCY 3 cut(s) 389, 401, 461
BstYI RGATCY 3 cut(s) 389, 401, 461
BsuI GTATCC 1 cut(s) 540
BsuRI GGCC 3 cut(s) 6, 108, 821
BtsCI GGATG 2 cut(s) 217, 842
BtsIMutI CAGTG 6 cut(s) 447, 729, 773, 903, 909, 923
Cac8I GCNNGC 3 cut(s) 174, 217, 557
CfoI GCGC 2 cut(s) 77, 600
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 5 cut(s) 4, 5, 127, 548, 819
CseI GACGC 1 cut(s) 1009
Csp6I GTAC 1 cut(s) 116
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 3 cut(s) 659, 683, 766
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 5 cut(s) 70, 292, 450, 908, 942
DpnI GATC 5 cut(s) 144, 391, 403, 463, 593
DpnII GATC 5 cut(s) 142, 389, 401, 461, 591
EaeI YGGCCR 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 1004
EarI CTCTTC 1 cut(s) 1004
EciI GGCGGA 1 cut(s) 119
Ecl136II GAGCTC 1 cut(s) 172
Eco130I CCWWGG 3 cut(s) 263, 465, 1001
Eco24I GRGCYC 2 cut(s) 8, 174
Eco32I GATATC 1 cut(s) 232
Eco47I GGWCC 2 cut(s) 127, 548
Eco47III AGCGCT 1 cut(s) 599
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 4 cut(s) 332, 525, 549, 637
Eco88I CYCGRG 1 cut(s) 858
EcoICRI GAGCTC 1 cut(s) 172
EcoRII CCWGG 3 cut(s) 532, 550, 616
EcoRV GATATC 1 cut(s) 232
EcoT14I CCWWGG 3 cut(s) 263, 465, 1001
EcoT38I GRGCYC 2 cut(s) 8, 174
ErhI CCWWGG 3 cut(s) 263, 465, 1001
Esp3I CGTCTC 2 cut(s) 177, 332
FaeI CATG 3 cut(s) 662, 686, 769
FalI AAGNNNNNCTT 8 cut(s) 305, 337, 693, 725, 743, 775, 785, 817
FaqI GGGAC 1 cut(s) 649
FatI CATG 3 cut(s) 658, 682, 765
Fnu4HI GCNGC 6 cut(s) 133, 246, 249, 498, 690, 771
FokI GGATG 2 cut(s) 224, 849
FriOI GRGCYC 2 cut(s) 8, 174
Fsp4HI GCNGC 6 cut(s) 133, 246, 249, 498, 690, 771
FspBI CTAG 1 cut(s) 582
GlaI GCGC 2 cut(s) 76, 599
GluI GCNGC 6 cut(s) 133, 246, 249, 498, 690, 771
GsuI CTGGAG 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 601
HaeIII GGCC 3 cut(s) 6, 108, 821
HapII CCGG 2 cut(s) 54, 222
HgaI GACGC 1 cut(s) 1009
HhaI GCGC 2 cut(s) 77, 600
Hin1I GRCGYC 1 cut(s) 1020
Hin1II CATG 3 cut(s) 662, 686, 769
Hin6I GCGC 2 cut(s) 75, 598
HinP1I GCGC 2 cut(s) 75, 598
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HindIII AAGCTT 2 cut(s) 752, 872
HinfI GANTC 4 cut(s) 81, 285, 418, 1012
HpaII CCGG 2 cut(s) 54, 222
HphI GGTGA 2 cut(s) 43, 725
Hpy166II GTNNAC 2 cut(s) 298, 308
Hpy188I TCNGA 3 cut(s) 151, 505, 894
Hpy188III TCNNGA 3 cut(s) 161, 272, 282
Hpy8I GTNNAC 2 cut(s) 298, 308
Hpy99I CGWCG 1 cut(s) 105
HpyAV CCTTC 4 cut(s) 385, 500, 661, 974
HpyCH4III ACNGT 4 cut(s) 200, 349, 898, 904
HpyCH4IV ACGT 4 cut(s) 90, 118, 186, 300
HpyCH4V TGCA 5 cut(s) 122, 352, 447, 692, 773
HpyF10VI GCNNNNNNNGC 4 cut(s) 138, 225, 494, 827
HpyF3I CTNAG 5 cut(s) 70, 292, 450, 908, 942
HpySE526I ACGT 4 cut(s) 90, 118, 186, 300
Hsp92I GRCGYC 1 cut(s) 1020
Hsp92II CATG 3 cut(s) 662, 686, 769
HspAI GCGC 2 cut(s) 75, 598
Kzo9I GATC 5 cut(s) 142, 389, 401, 461, 591
LmnI GCTCC 2 cut(s) 224, 1002
Lsp1109I GCAGC 4 cut(s) 260, 484, 676, 757
LweI GCATC 3 cut(s) 3, 202, 984
MaeI CTAG 1 cut(s) 582
MaeII ACGT 4 cut(s) 90, 118, 186, 300
MaeIII GTNAC 5 cut(s) 49, 65, 187, 862, 898
MalI GATC 5 cut(s) 144, 391, 403, 463, 593
MboI GATC 5 cut(s) 142, 389, 401, 461, 591
MboII GAAGA 7 cut(s) 325, 355, 363, 367, 370, 433, 1021
MflI RGATCY 3 cut(s) 389, 401, 461
MhlI GDGCHC 2 cut(s) 8, 174
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 1 cut(s) 519
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 2 cut(s) 75, 1021
MmeI TCCRAC 1 cut(s) 917
MnlI CCTC 8 cut(s) 107, 168, 429, 603, 670, 900, 975, 982
Mox20I TGGCCA 1 cut(s) 108
MscI TGGCCA 1 cut(s) 108
MseI TTAA 2 cut(s) 603, 851
MslI CAYNNNNRTG 2 cut(s) 663, 835
Msp20I TGGCCA 1 cut(s) 108
MspI CCGG 2 cut(s) 54, 222
MspR9I CCNGG 3 cut(s) 534, 552, 618
Mva1269I GAATGC 2 cut(s) 499, 807
MvaI CCWGG 3 cut(s) 534, 552, 618
MwoI GCNNNNNNNGC 4 cut(s) 138, 225, 494, 827
NdeII GATC 5 cut(s) 142, 389, 401, 461, 591
NlaIII CATG 3 cut(s) 662, 686, 769
NlaIV GGNNCC 2 cut(s) 6, 787
NmuCI GTSAC 2 cut(s) 49, 898
PctI GAATGC 2 cut(s) 499, 807
PfeI GAWTC 2 cut(s) 285, 418
Pfl23II CGTACG 1 cut(s) 115
PkrI GCNGC 6 cut(s) 134, 247, 250, 499, 691, 772
PleI GAGTC 2 cut(s) 75, 1020
PpsI GAGTC 2 cut(s) 75, 1020
Ppu21I YACGTR 1 cut(s) 119
PsiI TTATAA 1 cut(s) 960
Psp124BI GAGCTC 1 cut(s) 174
Psp1406I AACGTT 1 cut(s) 300
Psp6I CCWGG 3 cut(s) 532, 550, 616
PspGI CCWGG 3 cut(s) 532, 550, 616
PspLI CGTACG 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 6, 787
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 5 cut(s) 4, 5, 127, 548, 819
PsuI RGATCY 3 cut(s) 389, 401, 461
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
RseI CAYNNNNRTG 2 cut(s) 663, 835
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 2 cut(s) 603, 851
SatI GCNGC 6 cut(s) 133, 246, 249, 498, 690, 771
Sau3AI GATC 5 cut(s) 142, 389, 401, 461, 591
Sau96I GGNCC 5 cut(s) 4, 5, 127, 548, 819
SchI GAGTC 2 cut(s) 75, 1021
ScrFI CCNGG 3 cut(s) 534, 552, 618
SduI GDGCHC 2 cut(s) 8, 174
SfaNI GCATC 3 cut(s) 3, 202, 984
SinI GGWCC 2 cut(s) 127, 548
SmiMI CAYNNNNRTG 2 cut(s) 663, 835
Sse9I AATT 1 cut(s) 519
SsiI CCGC 3 cut(s) 130, 133, 246
SspI AATATT 1 cut(s) 45
SspMI CTAG 1 cut(s) 582
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 3 cut(s) 532, 550, 616
StyI CCWWGG 3 cut(s) 263, 465, 1001
TaaI ACNGT 4 cut(s) 200, 349, 898, 904
TaiI ACGT 4 cut(s) 93, 121, 189, 303
TaqI TCGA 3 cut(s) 283, 594, 967
TasI AATT 1 cut(s) 519
TauI GCSGC 2 cut(s) 135, 248
TfiI GAWTC 2 cut(s) 285, 418
Tru1I TTAA 2 cut(s) 603, 851
Tru9I TTAA 2 cut(s) 603, 851
TscAI CASTG 6 cut(s) 454, 736, 780, 903, 909, 923
TseFI GTSAC 2 cut(s) 49, 898
TseI GCWGC 4 cut(s) 248, 497, 689, 770
Tsp45I GTSAC 2 cut(s) 49, 898
TspDTI ATGAA 3 cut(s) 53, 277, 416
TspGWI ACGGA 6 cut(s) 89, 103, 206, 224, 653, 849
TspRI CASTG 6 cut(s) 454, 736, 780, 903, 909, 923
VpaK11BI GGWCC 2 cut(s) 127, 548
XspI CTAG 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.