Rmu_sc0000031.1_g000026

Polysaccharide biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000031.1
OG0012936
Physical Location & Seq
Forward (+)
135567 .. 136824
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000031.1_g000026.1.cds

Sequence Viewer

Length: 1011 bp
atgaaggtaatagtgaccggcgcctccggttacttaggaggaagactatgccacaagctactggaacggggccactccgttcgggccttggtccggcccaccagcgacctctcctcccttcctccaccgtcgtccacccttgaaatcgtttacggcgacgtcactgactaccactccctcctctccgccttctccggctgccacgtcgttttccacgccgccgccttagtcgagccctggcttcccgatccctccgacttcttctccgtcaacgtggggggattgaagaacgtgctgagagcaatcagggagacgaataccgtagagaaactcatctacacgtcgtcgtttttcgctctcggacccaccgacggcgacgtcgccgacgagactcagttccatcacgagaaattcttctgcacggagtacgagaaatccaaagcggccgccgataagatcgcgttacaagctgcgcagcaagagggtttgccggtgctgttactttatcccggagtaatttacggtcccgggaaactcaccgccggcaatgtggttgttcggatgatcatcgaaaggtttaatggacgattgcctgggtatataggcgccgggaatgataggtattcctttagccatgtcgatgatgtggtagatggccacattggagctatgtataaggggagaattggggagagatatctgcttactggcgaaaacgcatcgtttaagcatgtgtttgatgtagctgctgtactgactcatacgcagaggcctaagtttaacatcccattgtggttgattgaggtctatggatgggtgtcgattctcgtctctcggatcacagggaagcttcctctgatcagcccgccgactgtttatgttctaaggcatcaatgggcgtattcgtgtgagaaggccaagcaggagctggattatagtcctagaagcttgaaggaaggattagaggaggtgctgccctggctcaagaatttgggtttgatcaaatactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko00909 ko01130 map00900 map00909 map01130
Pfam Domains
Protein Families
Epimerase

Protein Analysis

336

Amino Acids

37.23

Weight (kDa)

7.2

Isoelectric Point (pI)

30.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33360 AT4G33360
fragaria_vesca FvH4_2g34590
malus_domestica MD08G1103100.v1.1
prunus_persica Prupe.1G438100_v2.0.a1
pyrus_communis pycom08g08450
rosa_chinensis RchiOBHm_Chr4g0409851 RchiOBHm_Chr5g0013111 RchiOBHm_Chr6g0307561 RchiOBHm_Chr6g0307711
rosa_laevigata RLG00000010706
rosa_multiflora Rmu_sc0000031.1_g000026
rosa_rugosa Rorug06G0359800
rosa_samantha Rh6AG469200 Rh6BG479800 Rh6CG485400 Rh6DG472000
rosa_wichuraiana Rw6G040970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
AatII GACGTC 2 cut(s) 162, 381
Acc16I TGCGCA 1 cut(s) 474
AccB1I GGYRCC 2 cut(s) 20, 605
AccII CGCG 1 cut(s) 461
AciI CCGC 7 cut(s) 186, 219, 222, 443, 447, 540, 866
AclWI GGATC 2 cut(s) 242, 845
AcoI YGGCCR 2 cut(s) 444, 655
AcsI RAATTY 2 cut(s) 410, 988
AcyI GRCGYC 4 cut(s) 21, 159, 378, 606
AfaI GTAC 2 cut(s) 428, 753
AfiI CCNNNNNNNGG 2 cut(s) 93, 371
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 3 cut(s) 143, 286, 952
AjiI CACGTC 2 cut(s) 205, 342
AjnI CCWGG 3 cut(s) 236, 592, 977
AluBI AGCT 7 cut(s) 58, 470, 668, 746, 850, 928, 948
AluI AGCT 7 cut(s) 58, 470, 668, 746, 850, 928, 948
Alw26I GTCTC 3 cut(s) 305, 383, 835
AlwI GGATC 2 cut(s) 242, 845
AlwNI CAGNNNCTG 1 cut(s) 928
Ama87I CYCGRG 1 cut(s) 527
AoxI GGCC 7 cut(s) 70, 84, 95, 444, 655, 770, 915
ApeKI GCWGC 5 cut(s) 198, 470, 475, 746, 973
ApoI RAATTY 2 cut(s) 410, 988
Asp700I GAANNNNTTC 1 cut(s) 413
AspLEI GCGC 3 cut(s) 23, 475, 608
AspS9I GGNCC 6 cut(s) 70, 84, 91, 96, 362, 524
AsuC2I CCSGG 4 cut(s) 510, 528, 529, 610
AsuHPI GGTGA 1 cut(s) 529
AvaI CYCGRG 1 cut(s) 527
AvaII GGWCC 3 cut(s) 91, 362, 524
BalI TGGCCA 1 cut(s) 657
BanI GGYRCC 2 cut(s) 20, 605
BanII GRGCYC 1 cut(s) 237
BauI CACGAG 1 cut(s) 404
BbsI GAAGAC 1 cut(s) 49
BbvI GCAGC 5 cut(s) 185, 457, 487, 733, 960
BccI CCATC 3 cut(s) 408, 647, 807
BceAI ACGGC 2 cut(s) 169, 388
BciT130I CCWGG 3 cut(s) 238, 594, 979
BclI TGATCA 3 cut(s) 564, 858, 999
BcnI CCSGG 4 cut(s) 510, 528, 529, 610
BcoDI GTCTC 3 cut(s) 305, 383, 835
BfaI CTAG 1 cut(s) 942
BfoI RGCGCY 2 cut(s) 24, 609
BisI GCNGC 9 cut(s) 199, 219, 222, 444, 447, 471, 476, 747, 974
BlsI GCNGC 9 cut(s) 200, 220, 223, 445, 448, 472, 477, 748, 975
Bme1390I CCNGG 7 cut(s) 238, 510, 528, 529, 594, 610, 979
Bme18I GGWCC 3 cut(s) 91, 362, 524
BmeT110I CYCGRG 1 cut(s) 527
BmgBI CACGTC 2 cut(s) 205, 342
BmgT120I GGNCC 6 cut(s) 70, 84, 91, 96, 362, 524
BmiI GGNNCC 5 cut(s) 22, 71, 364, 526, 607
BmrFI CCNGG 7 cut(s) 238, 510, 528, 529, 594, 610, 979
BmsI GCATC 2 cut(s) 728, 898
BpiI GAAGAC 1 cut(s) 49
BpuEI CTTGAG 1 cut(s) 968
BpuMI CCSGG 4 cut(s) 510, 528, 529, 610
BsaBI GATNNNNATC 1 cut(s) 566
BsaHI GRCGYC 4 cut(s) 21, 159, 378, 606
BsaJI CCNNGG 5 cut(s) 87, 236, 527, 593, 977
BsaWI WCCGGW 1 cut(s) 26
BsaXI ACNNNNNCTCC 6 cut(s) 98, 128, 158, 188, 248, 278
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 371
Bse118I RCCGGY 3 cut(s) 17, 490, 542
Bse1I ACTGG 2 cut(s) 66, 712
Bse3DI GCAATG 1 cut(s) 553
Bse8I GATNNNNATC 1 cut(s) 566
BseBI CCWGG 3 cut(s) 238, 594, 979
BseDI CCNNGG 5 cut(s) 87, 236, 527, 593, 977
BseGI GGATG 3 cut(s) 567, 783, 818
BseJI GATNNNNATC 1 cut(s) 566
BseLI CCNNNNNNNGG 2 cut(s) 93, 371
BseMI GCAATG 1 cut(s) 553
BseMII CTCAG 2 cut(s) 287, 407
BseNI ACTGG 2 cut(s) 66, 712
BseRI GAGGAG 3 cut(s) 103, 170, 980
BseX3I CGGCCG 1 cut(s) 444
BseXI GCAGC 5 cut(s) 185, 457, 487, 733, 960
BsgI GTGCAG 1 cut(s) 403
Bsh1236I CGCG 1 cut(s) 461
Bsh1285I CGRYCG 1 cut(s) 447
BshFI GGCC 7 cut(s) 72, 86, 97, 446, 657, 772, 917
BshNI GGYRCC 2 cut(s) 20, 605
BsiEI CGRYCG 1 cut(s) 447
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 9 cut(s) 18, 27, 94, 195, 491, 510, 528, 543, 609
BslFI GGGAC 1 cut(s) 510
BslI CCNNNNNNNGG 2 cut(s) 93, 371
BsmAI GTCTC 3 cut(s) 305, 383, 835
BsmBI CGTCTC 2 cut(s) 305, 835
BsmFI GGGAC 1 cut(s) 510
BsnI GGCC 7 cut(s) 72, 86, 97, 446, 657, 772, 917
BsoBI CYCGRG 1 cut(s) 527
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 6 cut(s) 247, 456, 564, 837, 858, 999
BspACI CCGC 7 cut(s) 186, 219, 222, 443, 447, 540, 866
BspANI GGCC 7 cut(s) 72, 86, 97, 446, 657, 772, 917
BspCNI CTCAG 2 cut(s) 288, 406
BspFNI CGCG 1 cut(s) 461
BspLI GGNNCC 5 cut(s) 22, 71, 364, 526, 607
BspPI GGATC 2 cut(s) 242, 845
BspT107I GGYRCC 2 cut(s) 20, 605
BsrDI GCAATG 1 cut(s) 553
BsrFI RCCGGY 3 cut(s) 17, 490, 542
BsrI ACTGG 2 cut(s) 66, 712
BssAI RCCGGY 3 cut(s) 17, 490, 542
BssECI CCNNGG 5 cut(s) 87, 236, 527, 593, 977
BssMI GATC 6 cut(s) 247, 456, 564, 837, 858, 999
BssNI GRCGYC 4 cut(s) 21, 159, 378, 606
BssSI CACGAG 1 cut(s) 404
BssT1I CCWWGG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 404
Bst2UI CCWGG 3 cut(s) 238, 594, 979
Bst4CI ACNGT 4 cut(s) 129, 322, 524, 874
BstACI GRCGYC 4 cut(s) 21, 159, 378, 606
BstC8I GCNNGC 2 cut(s) 544, 866
BstDEI CTNAG 6 cut(s) 34, 226, 296, 393, 774, 884
BstF5I GGATG 3 cut(s) 567, 783, 818
BstFNI CGCG 1 cut(s) 461
BstH2I RGCGCY 2 cut(s) 24, 609
BstHHI GCGC 3 cut(s) 23, 475, 608
BstKTI GATC 6 cut(s) 250, 459, 567, 840, 861, 1002
BstMAI GTCTC 3 cut(s) 305, 383, 835
BstMBI GATC 6 cut(s) 247, 456, 564, 837, 858, 999
BstMCI CGRYCG 1 cut(s) 447
BstMWI GCNNNNNNNGC 2 cut(s) 467, 979
BstNI CCWGG 3 cut(s) 238, 594, 979
BstNSI RCATGY 1 cut(s) 734
BstSCI CCNGG 7 cut(s) 236, 508, 526, 527, 592, 608, 977
BstUI CGCG 1 cut(s) 461
BstV1I GCAGC 5 cut(s) 185, 457, 487, 733, 960
BstV2I GAAGAC 1 cut(s) 49
BstZI CGGCCG 1 cut(s) 444
BsuRI GGCC 7 cut(s) 72, 86, 97, 446, 657, 772, 917
BtrI CACGTC 2 cut(s) 205, 342
BtsCI GGATG 3 cut(s) 567, 783, 818
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 2 cut(s) 544, 866
CaiI CAGNNNCTG 1 cut(s) 928
CciNI GCGGCCGC 1 cut(s) 444
CfoI GCGC 3 cut(s) 23, 475, 608
Cfr10I RCCGGY 3 cut(s) 17, 490, 542
Cfr13I GGNCC 6 cut(s) 70, 84, 91, 96, 362, 524
Cfr9I CCCGGG 1 cut(s) 527
Csp6I GTAC 2 cut(s) 427, 752
CviAII CATG 2 cut(s) 635, 731
CviQI GTAC 2 cut(s) 427, 752
DdeI CTNAG 6 cut(s) 34, 226, 296, 393, 774, 884
DinI GGCGCC 2 cut(s) 22, 607
DpnI GATC 6 cut(s) 249, 458, 566, 839, 860, 1001
DpnII GATC 6 cut(s) 247, 456, 564, 837, 858, 999
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
EaeI YGGCCR 2 cut(s) 444, 655
EagI CGGCCG 1 cut(s) 444
EciI GGCGGA 1 cut(s) 175
EclXI CGGCCG 1 cut(s) 444
Eco130I CCWWGG 1 cut(s) 87
Eco147I AGGCCT 1 cut(s) 772
Eco24I GRGCYC 1 cut(s) 237
Eco32I GATATC 1 cut(s) 698
Eco47I GGWCC 3 cut(s) 91, 362, 524
Eco52I CGGCCG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 527
EcoRII CCWGG 3 cut(s) 236, 592, 977
EcoRV GATATC 1 cut(s) 698
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 237
EgeI GGCGCC 2 cut(s) 22, 607
EheI GGCGCC 2 cut(s) 22, 607
ErhI CCWWGG 1 cut(s) 87
Esp3I CGTCTC 2 cut(s) 305, 835
FaeI CATG 2 cut(s) 638, 734
FaqI GGGAC 1 cut(s) 510
FatI CATG 2 cut(s) 634, 730
FauI CCCGC 1 cut(s) 873
FbaI TGATCA 3 cut(s) 564, 858, 999
Fnu4HI GCNGC 9 cut(s) 199, 219, 222, 444, 447, 471, 476, 747, 974
FokI GGATG 3 cut(s) 574, 770, 825
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 9 cut(s) 199, 219, 222, 444, 447, 471, 476, 747, 974
FspBI CTAG 1 cut(s) 942
FspI TGCGCA 1 cut(s) 474
GlaI GCGC 3 cut(s) 22, 474, 607
GluI GCNGC 9 cut(s) 199, 219, 222, 444, 447, 471, 476, 747, 974
HaeII RGCGCY 2 cut(s) 24, 609
HaeIII GGCC 7 cut(s) 72, 86, 97, 446, 657, 772, 917
HapII CCGG 9 cut(s) 18, 27, 94, 195, 491, 510, 528, 543, 609
HhaI GCGC 3 cut(s) 23, 475, 608
Hin1I GRCGYC 4 cut(s) 21, 159, 378, 606
Hin1II CATG 2 cut(s) 638, 734
Hin6I GCGC 3 cut(s) 21, 473, 606
HinP1I GCGC 3 cut(s) 21, 473, 606
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 2 cut(s) 848, 946
HinfI GANTC 3 cut(s) 391, 757, 823
HpaII CCGG 9 cut(s) 18, 27, 94, 195, 491, 510, 528, 543, 609
HphI GGTGA 1 cut(s) 529
Hpy166II GTNNAC 3 cut(s) 135, 151, 271
Hpy188I TCNGA 5 cut(s) 256, 362, 561, 837, 858
Hpy188III TCNNGA 3 cut(s) 245, 404, 985
Hpy8I GTNNAC 3 cut(s) 135, 151, 271
Hpy99I CGWCG 9 cut(s) 133, 161, 209, 346, 349, 374, 380, 383, 389
HpyAV CCTTC 5 cut(s) 128, 199, 907, 946, 950
HpyCH4III ACNGT 4 cut(s) 129, 322, 524, 874
HpyCH4IV ACGT 6 cut(s) 159, 204, 273, 291, 341, 378
HpyCH4V TGCA 1 cut(s) 420
HpyF10VI GCNNNNNNNGC 2 cut(s) 467, 979
HpyF3I CTNAG 6 cut(s) 34, 226, 296, 393, 774, 884
HpySE526I ACGT 6 cut(s) 159, 204, 273, 291, 341, 378
Hsp92I GRCGYC 4 cut(s) 21, 159, 378, 606
Hsp92II CATG 2 cut(s) 638, 734
HspAI GCGC 3 cut(s) 21, 473, 606
KasI GGCGCC 2 cut(s) 20, 605
KroI GCCGGC 1 cut(s) 542
KroNI GCCGGC 1 cut(s) 544
Ksp22I TGATCA 3 cut(s) 564, 858, 999
Kzo9I GATC 6 cut(s) 247, 456, 564, 837, 858, 999
LmnI GCTCC 2 cut(s) 665, 925
Lsp1109I GCAGC 5 cut(s) 185, 457, 487, 733, 960
LweI GCATC 2 cut(s) 728, 898
MaeI CTAG 1 cut(s) 942
MaeII ACGT 6 cut(s) 159, 204, 273, 291, 341, 378
MaeIII GTNAC 5 cut(s) 13, 29, 160, 462, 498
MalI GATC 6 cut(s) 249, 458, 566, 839, 860, 1001
MboI GATC 6 cut(s) 247, 456, 564, 837, 858, 999
MboII GAAGA 4 cut(s) 54, 253, 298, 406
MhlI GDGCHC 1 cut(s) 237
MlsI TGGCCA 1 cut(s) 657
MluCI AATT 4 cut(s) 410, 516, 684, 988
MluNI TGGCCA 1 cut(s) 657
Mly113I GGCGCC 2 cut(s) 21, 606
MlyI GAGTC 2 cut(s) 385, 751
MmeI TCCRAC 1 cut(s) 279
Mox20I TGGCCA 1 cut(s) 657
MroNI GCCGGC 1 cut(s) 542
MroXI GAANNNNTTC 1 cut(s) 413
MscI TGGCCA 1 cut(s) 657
MseI TTAA 3 cut(s) 579, 726, 780
MslI CAYNNNNRTG 1 cut(s) 639
Msp20I TGGCCA 1 cut(s) 657
MspI CCGG 9 cut(s) 18, 27, 94, 195, 491, 510, 528, 543, 609
MspR9I CCNGG 7 cut(s) 238, 510, 528, 529, 594, 610, 979
MvaI CCWGG 3 cut(s) 238, 594, 979
MvnI CGCG 1 cut(s) 461
MwoI GCNNNNNNNGC 2 cut(s) 467, 979
NaeI GCCGGC 1 cut(s) 544
NarI GGCGCC 2 cut(s) 21, 606
NciI CCSGG 4 cut(s) 510, 528, 529, 610
NdeII GATC 6 cut(s) 247, 456, 564, 837, 858, 999
NgoMIV GCCGGC 1 cut(s) 542
NlaIII CATG 2 cut(s) 638, 734
NlaIV GGNNCC 5 cut(s) 22, 71, 364, 526, 607
NmuCI GTSAC 2 cut(s) 13, 160
NotI GCGGCCGC 1 cut(s) 444
NsbI TGCGCA 1 cut(s) 474
NspI RCATGY 1 cut(s) 734
PceI AGGCCT 1 cut(s) 772
PcsI WCGNNNNNNNCGW 3 cut(s) 153, 366, 384
PdiI GCCGGC 1 cut(s) 544
PdmI GAANNNNTTC 1 cut(s) 413
PfeI GAWTC 1 cut(s) 823
PfoI TCCNGGA 1 cut(s) 508
PkrI GCNGC 9 cut(s) 200, 220, 223, 445, 448, 472, 477, 748, 975
PleI GAGTC 2 cut(s) 385, 751
PluTI GGCGCC 2 cut(s) 24, 609
PpsI GAGTC 2 cut(s) 385, 751
Psp6I CCWGG 3 cut(s) 236, 592, 977
PspGI CCWGG 3 cut(s) 236, 592, 977
PspN4I GGNNCC 5 cut(s) 22, 71, 364, 526, 607
PspPI GGNCC 6 cut(s) 70, 84, 91, 96, 362, 524
PstNI CAGNNNCTG 1 cut(s) 928
RsaI GTAC 2 cut(s) 428, 753
RsaNI GTAC 2 cut(s) 427, 752
RseI CAYNNNNRTG 1 cut(s) 639
SaqAI TTAA 3 cut(s) 579, 726, 780
SatI GCNGC 9 cut(s) 199, 219, 222, 444, 447, 471, 476, 747, 974
Sau3AI GATC 6 cut(s) 247, 456, 564, 837, 858, 999
Sau96I GGNCC 6 cut(s) 70, 84, 91, 96, 362, 524
SchI GAGTC 2 cut(s) 385, 751
ScrFI CCNGG 7 cut(s) 238, 510, 528, 529, 594, 610, 979
SduI GDGCHC 1 cut(s) 237
SfaNI GCATC 2 cut(s) 728, 898
SfoI GGCGCC 2 cut(s) 22, 607
SinI GGWCC 3 cut(s) 91, 362, 524
SmaI CCCGGG 1 cut(s) 529
SmiMI CAYNNNNRTG 1 cut(s) 639
SmlI CTYRAG 1 cut(s) 983
SmoI CTYRAG 1 cut(s) 983
Sse9I AATT 4 cut(s) 410, 516, 684, 988
SseBI AGGCCT 1 cut(s) 772
SsiI CCGC 7 cut(s) 186, 219, 222, 443, 447, 540, 866
SspDI GGCGCC 2 cut(s) 20, 605
SspMI CTAG 1 cut(s) 942
StuI AGGCCT 1 cut(s) 772
StyD4I CCNGG 7 cut(s) 236, 508, 526, 527, 592, 608, 977
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 4 cut(s) 129, 322, 524, 874
TaiI ACGT 6 cut(s) 162, 207, 276, 294, 344, 381
TaqI TCGA 4 cut(s) 231, 570, 639, 821
TasI AATT 4 cut(s) 410, 516, 684, 988
TatI WGTACW 1 cut(s) 751
TauI GCSGC 4 cut(s) 221, 224, 446, 449
TfiI GAWTC 1 cut(s) 823
Tru1I TTAA 3 cut(s) 579, 726, 780
Tru9I TTAA 3 cut(s) 579, 726, 780
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 2 cut(s) 13, 160
TseI GCWGC 5 cut(s) 198, 470, 475, 746, 973
Tsp45I GTSAC 2 cut(s) 13, 160
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 3 cut(s) 67, 256, 437
TspMI CCCGGG 1 cut(s) 527
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 3 cut(s) 91, 362, 524
XapI RAATTY 2 cut(s) 410, 988
XceI RCATGY 1 cut(s) 734
XcmI CCANNNNNNNNNTGG 1 cut(s) 925
XmaI CCCGGG 1 cut(s) 527
XmnI GAANNNNTTC 1 cut(s) 413
XspI CTAG 1 cut(s) 942
ZraI GACGTC 2 cut(s) 160, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.