Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008692

Physical Location & Seq

Genomic Coordinates Reverse (-)

50834084 .. 50834982

Gene Structure 899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0359800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGGTCAAGGAGCATCCCAGCCCAAAAGTAAAAGGTTGACGCGTAGTGAGCGCCAAGATGAGCTTCTTAAGATGTGTCCTCTCCCTGCGACAGTTATTCGTCGCCCAAACACGAACCCAGATGGATCTGATATTCCAAGCATACCTGGTTCTGATTTTGAGTTTCCTGATCGTAATTGTGAGACCTTGATTAGGATGCTCTATCAGGCAATGAGCAGGAACAAGGACCTGCTTCTGGCACAGTGCTATCAGGTAGCGGTGCGGGATAGTTGTGGTATTGAGGTCGACCTCTCGGCTAGTCTTCCCACTAAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF829

Protein Analysis

105

Amino Acids

11.67

Weight (kDa)

7.63

Isoelectric Point (pI)

56.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44250 AT5G44250
fragaria_vesca	FvH4_2g34600 FvH4_2g34600 FvH4_2g34600
malus_domestica	MD08G1103200.v1.1 MD15G1084500.v1.1
prunus_persica	Prupe.1G438200_v2.0.a1 Prupe.1G438200_v2.0.a1
pyrus_communis	pycom08g08460 pycom15g07980
rosa_chinensis	RchiOBHm_Chr6g0307551 RchiOBHm_Chr6g0307701
rosa_laevigata	RLG00000010707
rosa_multiflora	Rmu_co8500775.1_g000001
rosa_rugosa	Rorug06G0359600 Rorug06G0359700 Rorug06G0359800
rosa_samantha	Rh6AG469100 Rh6BG479700 Rh6CG485300 Rh6DG471900
rosa_wichuraiana	Rw6G040960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	1 cut(s)	43
AciI	CCGC	2 cut(s)	257, 262
AclWI	GGATC	1 cut(s)	133
AfiI	CCNNNNNNNGG	2 cut(s)	192, 235
AflII	CTTAAG	1 cut(s)	68
AflIII	ACRYGT	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	145
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	293
BccI	CCATC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	55
BfrI	CTTAAG	1 cut(s)	68
BfuAI	ACCTGC	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	2 cut(s)	23, 186
BpiI	GAAGAC	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 235
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	147
BseGI	GGATG	2 cut(s)	14, 201
BseLI	CCNNNNNNNGG	2 cut(s)	192, 235
BseMI	GCAATG	1 cut(s)	216
BseYI	CCCAGC	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	43
BslI	CCNNNNNNNGG	2 cut(s)	192, 235
BsmAI	GTCTC	1 cut(s)	176
Bso31I	GGTCTC	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	125, 169
BspACI	CCGC	2 cut(s)	257, 262
BspFNI	CGCG	1 cut(s)	43
BspHI	TCATGA	1 cut(s)	314
BspMI	ACCTGC	1 cut(s)	237
BspPI	GGATC	1 cut(s)	133
BspTI	CTTAAG	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	216
BssMI	GATC	2 cut(s)	125, 169
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	94, 243
BstAFI	CTTAAG	1 cut(s)	68
BstENI	CCTNNNNNAGG	1 cut(s)	190
BstF5I	GGATG	2 cut(s)	14, 201
BstFNI	CGCG	1 cut(s)	43
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	2 cut(s)	128, 172
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	2 cut(s)	125, 169
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BstUI	CGCG	1 cut(s)	43
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BtsCI	GGATG	2 cut(s)	14, 201
BtsIMutI	CAGTG	1 cut(s)	248
BveI	ACCTGC	1 cut(s)	237
CciI	TCATGA	1 cut(s)	314
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	226
CseI	GACGC	1 cut(s)	49
CsiI	ACCWGGT	1 cut(s)	145
CviAII	CATG	1 cut(s)	315
CviJI	RGCY	3 cut(s)	22, 64, 296
CviKI_1	RGCY	3 cut(s)	22, 64, 296
DpnI	GATC	2 cut(s)	127, 171
DpnII	GATC	2 cut(s)	125, 169
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	226
EcoNI	CCTNNNNNAGG	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	145
FaeI	CATG	1 cut(s)	318
FaiI	YATR	2 cut(s)	143, 316
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FatI	CATG	1 cut(s)	314
FauI	CCCGC	1 cut(s)	255
FblI	GTMKAC	1 cut(s)	285
FokI	GGATG	1 cut(s)	208
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	53
GsaI	CCCAGC	1 cut(s)	22
HaeII	RGCGCY	1 cut(s)	55
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	318
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	2 cut(s)	39, 286
HindII	GTYRAC	2 cut(s)	39, 286
Hpy166II	GTNNAC	2 cut(s)	39, 286
Hpy188I	TCNGA	2 cut(s)	130, 154
Hpy188III	TCNNGA	2 cut(s)	167, 315
Hpy8I	GTNNAC	2 cut(s)	39, 286
Hpy99I	CGWCG	1 cut(s)	105
HpyCH4III	ACNGT	2 cut(s)	94, 243
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
Hsp92II	CATG	1 cut(s)	318
HspAI	GCGC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	125, 169
LmnI	GCTCC	1 cut(s)	11
LweI	GCATC	2 cut(s)	23, 186
MabI	ACCWGGT	1 cut(s)	145
MaeI	CTAG	1 cut(s)	297
MalI	GATC	2 cut(s)	127, 171
MboI	GATC	2 cut(s)	125, 169
MboII	GAAGA	1 cut(s)	293
MflI	RGATCY	1 cut(s)	125
MluCI	AATT	1 cut(s)	175
MluI	ACGCGT	1 cut(s)	41
MnlI	CCTC	3 cut(s)	90, 274, 299
MseI	TTAA	1 cut(s)	69
MspCI	CTTAAG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeII	GATC	2 cut(s)	125, 169
NlaIII	CATG	1 cut(s)	318
NmeAIII	GCCGAG	1 cut(s)	272
PagI	TCATGA	1 cut(s)	314
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	226
PspPPI	RGGWCCY	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	125
SalI	GTCGAC	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	69
Sau3AI	GATC	2 cut(s)	125, 169
Sau96I	GGNCC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	147
SetI	ASST	8 cut(s)	38, 66, 148, 188, 231, 255, 285, 291
SexAI	ACCWGGT	1 cut(s)	145
SfaNI	GCATC	2 cut(s)	23, 186
SinI	GGWCC	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	2 cut(s)	257, 262
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	2 cut(s)	94, 243
TaqI	TCGA	1 cut(s)	285
TasI	AATT	1 cut(s)	175
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	1 cut(s)	248
TspRI	CASTG	1 cut(s)	248
Vha464I	CTTAAG	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	226
XagI	CCTNNNNNAGG	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.