Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008692

Physical Location & Seq

Genomic Coordinates Reverse (-)

50829573 .. 50830380

Gene Structure 808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0359600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCATTTTTCCATTTCCTAAGAGCCGGAGGCCCAATTTTTTCAAGTTTTTTGAAAAAGAACAGATCTGTTATTTTGAAAGCTGAGGGGACTGAAAGAAATGTTTTAATCATCAAGTTAAATCCTCGTGTGGATATCTCTCTGGCTGAGATCCGGAGAGATTTTGCTCGCACAGTTTTTAACAAAAACCTTCCCTTCACCTCGAAATGGAAGTCTGAGGATTACTCTCTCTTACACAGGTTCACCATCGGCTATGTATTAGCCGACGTCGGGCTGCTTGTTGCTGGTCTTATCTTTTGCTTTTGGAAGTCCGGCTACTACAGCGCCCCAAGAGAGAAGGAAGAGGATGAAGAGTCCAGCGAGCAGCTGAAGCCGATGGAGGAGTCCGGCGAGTCTCAGAATTGGGTGTTTTCCACGGCCCGGGAAAGAACACTTGGGACTGAAGAGCAGATACAGAGGCTGGTAGCTCACTCTCAGATGATAAATCTCAATTTATCATCCCTCCTGAAGAACACAACAAAGATGGGTCAGGATCTGGTCACCGTGATCCAAAGTCTCAAAGCTATCCACAAGCGACTCTTGGTGATTGAGGAGCACTTGGGTGTCCCGAAGAGGAGTGCCTCAAATGATGATGGTGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF829

Protein Analysis

214

Amino Acids

24.39

Weight (kDa)

7.85

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44250 AT5G44250
fragaria_vesca	FvH4_2g34600 FvH4_2g34600 FvH4_2g34600
malus_domestica	MD08G1103200.v1.1 MD15G1084500.v1.1
prunus_persica	Prupe.1G438200_v2.0.a1 Prupe.1G438200_v2.0.a1
pyrus_communis	pycom08g08460 pycom15g07980
rosa_chinensis	RchiOBHm_Chr6g0307551 RchiOBHm_Chr6g0307701
rosa_laevigata	RLG00000010707
rosa_multiflora	Rmu_co8500775.1_g000001
rosa_rugosa	Rorug06G0359600 Rorug06G0359700 Rorug06G0359800
rosa_samantha	Rh6AG469100 Rh6BG479700 Rh6CG485300 Rh6DG471900
rosa_wichuraiana	Rw6G040960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	270
AccIII	TCCGGA	1 cut(s)	153
AclWI	GGATC	3 cut(s)	145, 540, 541
AcuI	CTGAAG	3 cut(s)	389, 462, 527
AcyI	GRCGYC	1 cut(s)	267
AfiI	CCNNNNNNNGG	3 cut(s)	207, 270, 420
AgsI	TTSAA	3 cut(s)	45, 55, 79
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AleI	CACNNNNGTG	1 cut(s)	600
AluBI	AGCT	4 cut(s)	83, 367, 467, 563
AluI	AGCT	4 cut(s)	83, 367, 467, 563
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	2 cut(s)	399, 560
AlwI	GGATC	3 cut(s)	145, 540, 541
AlwNI	CAGNNNCTG	2 cut(s)	460, 535
Ama87I	CYCGRG	1 cut(s)	420
Aor13HI	TCCGGA	1 cut(s)	153
AoxI	GGCC	2 cut(s)	31, 417
ApeKI	GCWGC	2 cut(s)	274, 364
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	2 cut(s)	32, 418
AsuC2I	CCSGG	2 cut(s)	421, 422
AsuHPI	GGTGA	4 cut(s)	190, 235, 532, 595
AvaI	CYCGRG	1 cut(s)	420
BarI	GAAGNNNNNNTAC	4 cut(s)	299, 331, 435, 467
BauI	CACGAG	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	597
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	261, 376
BccI	CCATC	4 cut(s)	254, 370, 517, 626
BceAI	ACGGC	1 cut(s)	432
BcnI	CCSGG	2 cut(s)	421, 422
BcoDI	GTCTC	2 cut(s)	399, 560
BfmI	CTRYAG	1 cut(s)	319
BfoI	RGCGCY	1 cut(s)	327
BglII	AGATCT	1 cut(s)	65
BisI	GCNGC	2 cut(s)	275, 365
BlsI	GCNGC	2 cut(s)	276, 366
Bme1390I	CCNGG	2 cut(s)	421, 422
BmeT110I	CYCGRG	1 cut(s)	420
BmgT120I	GGNCC	2 cut(s)	32, 418
BmrFI	CCNGG	2 cut(s)	421, 422
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
Bpu10I	CCTNAGC	1 cut(s)	84
BpuMI	CCSGG	2 cut(s)	421, 422
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	414, 420
BsaWI	WCCGGW	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 270, 420
BseAI	TCCGGA	1 cut(s)	153
BseDI	CCNNGG	2 cut(s)	414, 420
BseGI	GGATG	2 cut(s)	352, 497
BseLI	CCNNNNNNNGG	3 cut(s)	207, 270, 420
BseMII	CTCAG	5 cut(s)	75, 138, 207, 410, 488
BseRI	GAGGAG	3 cut(s)	395, 605, 628
BseXI	GCAGC	2 cut(s)	261, 376
BshFI	GGCC	2 cut(s)	33, 419
BsiHKAI	GWGCWC	1 cut(s)	597
BsiHKCI	CYCGRG	1 cut(s)	420
BsiSI	CCGG	5 cut(s)	27, 154, 312, 387, 421
BslFI	GGGAC	3 cut(s)	103, 451, 590
BslI	CCNNNNNNNGG	3 cut(s)	207, 270, 420
BsmAI	GTCTC	2 cut(s)	399, 560
BsmFI	GGGAC	3 cut(s)	103, 451, 590
BsnI	GGCC	2 cut(s)	33, 419
BsoBI	CYCGRG	1 cut(s)	420
Bsp1286I	GDGCHC	1 cut(s)	597
Bsp13I	TCCGGA	1 cut(s)	153
Bsp143I	GATC	4 cut(s)	65, 150, 532, 546
BspANI	GGCC	2 cut(s)	33, 419
BspCNI	CTCAG	5 cut(s)	76, 139, 208, 409, 487
BspEI	TCCGGA	1 cut(s)	153
BspPI	GGATC	3 cut(s)	145, 540, 541
BspQI	GCTCTTC	1 cut(s)	438
BssECI	CCNNGG	2 cut(s)	414, 420
BssMI	GATC	4 cut(s)	65, 150, 532, 546
BssNI	GRCGYC	1 cut(s)	267
BssSI	CACGAG	1 cut(s)	126
Bst2BI	CACGAG	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	175, 544
Bst6I	CTCTTC	4 cut(s)	336, 345, 438, 605
BstACI	GRCGYC	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	169, 362
BstDEI	CTNAG	6 cut(s)	20, 84, 147, 216, 396, 474
BstDSI	CCRYGG	1 cut(s)	414
BstEII	GGTNACC	1 cut(s)	538
BstF5I	GGATG	2 cut(s)	352, 497
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	4 cut(s)	68, 153, 535, 549
BstMAI	GTCTC	2 cut(s)	399, 560
BstMBI	GATC	4 cut(s)	65, 150, 532, 546
BstMWI	GCNNNNNNNGC	2 cut(s)	321, 370
BstPI	GGTNACC	1 cut(s)	538
BstSCI	CCNGG	2 cut(s)	419, 420
BstSFI	CTRYAG	1 cut(s)	319
BstV1I	GCAGC	2 cut(s)	261, 376
BstX2I	RGATCY	3 cut(s)	65, 150, 532
BstYI	RGATCY	3 cut(s)	65, 150, 532
BsuRI	GGCC	2 cut(s)	33, 419
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	2 cut(s)	352, 497
Cac8I	GCNNGC	2 cut(s)	169, 362
CaiI	CAGNNNCTG	2 cut(s)	460, 535
CfoI	GCGC	1 cut(s)	326
Cfr13I	GGNCC	2 cut(s)	32, 418
Cfr9I	CCCGGG	1 cut(s)	420
DdeI	CTNAG	6 cut(s)	20, 84, 147, 216, 396, 474
DpnI	GATC	4 cut(s)	67, 152, 534, 548
DpnII	GATC	4 cut(s)	65, 150, 532, 546
Eam1104I	CTCTTC	4 cut(s)	336, 345, 438, 605
EarI	CTCTTC	4 cut(s)	336, 345, 438, 605
Eco32I	GATATC	1 cut(s)	136
Eco57I	CTGAAG	3 cut(s)	389, 462, 527
Eco88I	CYCGRG	1 cut(s)	420
Eco91I	GGTNACC	1 cut(s)	538
EcoO65I	GGTNACC	1 cut(s)	538
EcoRV	GATATC	1 cut(s)	136
FaiI	YATR	1 cut(s)	255
FalI	AAGNNNNNCTT	2 cut(s)	563, 595
FaqI	GGGAC	3 cut(s)	103, 451, 590
Fnu4HI	GCNGC	2 cut(s)	275, 365
FokI	GGATG	2 cut(s)	359, 484
Fsp4HI	GCNGC	2 cut(s)	275, 365
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	2 cut(s)	275, 365
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	33, 419
HapII	CCGG	5 cut(s)	27, 154, 312, 387, 421
HhaI	GCGC	1 cut(s)	326
Hin1I	GRCGYC	1 cut(s)	267
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HinfI	GANTC	4 cut(s)	353, 383, 392, 576
HpaII	CCGG	5 cut(s)	27, 154, 312, 387, 421
HphI	GGTGA	4 cut(s)	190, 235, 532, 595
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	3 cut(s)	217, 399, 477
Hpy188III	TCNNGA	4 cut(s)	154, 505, 530, 607
Hpy8I	GTNNAC	1 cut(s)	243
Hpy99I	CGWCG	2 cut(s)	269, 272
HpyAV	CCTTC	3 cut(s)	200, 205, 331
HpyCH4III	ACNGT	2 cut(s)	175, 544
HpyCH4IV	ACGT	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	2 cut(s)	321, 370
HpyF3I	CTNAG	6 cut(s)	20, 84, 147, 216, 396, 474
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	267
HspAI	GCGC	1 cut(s)	324
Kpn2I	TCCGGA	1 cut(s)	153
Kzo9I	GATC	4 cut(s)	65, 150, 532, 546
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	1 cut(s)	592
Lsp1109I	GCAGC	2 cut(s)	261, 376
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	4 cut(s)	67, 152, 534, 548
MboI	GATC	4 cut(s)	65, 150, 532, 546
MboII	GAAGA	5 cut(s)	353, 362, 455, 520, 622
MflI	RGATCY	3 cut(s)	65, 150, 532
MhlI	GDGCHC	1 cut(s)	597
MluCI	AATT	3 cut(s)	36, 400, 490
MlyI	GAGTC	4 cut(s)	362, 392, 401, 570
MroI	TCCGGA	1 cut(s)	153
MseI	TTAA	3 cut(s)	107, 119, 180
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	5 cut(s)	27, 154, 312, 387, 421
MspR9I	CCNGG	2 cut(s)	421, 422
MwoI	GCNNNNNNNGC	2 cut(s)	321, 370
NciI	CCSGG	2 cut(s)	421, 422
NdeII	GATC	4 cut(s)	65, 150, 532, 546
NmuCI	GTSAC	1 cut(s)	538
OliI	CACNNNNGTG	1 cut(s)	600
PciSI	GCTCTTC	1 cut(s)	438
PkrI	GCNGC	2 cut(s)	276, 366
PleI	GAGTC	4 cut(s)	361, 391, 400, 570
PpsI	GAGTC	4 cut(s)	361, 391, 400, 570
PspEI	GGTNACC	1 cut(s)	538
PspPI	GGNCC	2 cut(s)	32, 418
PstNI	CAGNNNCTG	2 cut(s)	460, 535
PsuI	RGATCY	3 cut(s)	65, 150, 532
PvuII	CAGCTG	1 cut(s)	367
RseI	CAYNNNNRTG	1 cut(s)	600
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	3 cut(s)	107, 119, 180
SatI	GCNGC	2 cut(s)	275, 365
Sau3AI	GATC	4 cut(s)	65, 150, 532, 546
Sau96I	GGNCC	2 cut(s)	32, 418
SchI	GAGTC	4 cut(s)	362, 392, 401, 570
ScrFI	CCNGG	2 cut(s)	421, 422
SduI	GDGCHC	1 cut(s)	597
SetI	ASST	8 cut(s)	85, 192, 203, 242, 270, 369, 469, 565
SfcI	CTRYAG	1 cut(s)	319
SmaI	CCCGGG	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	600
Sse9I	AATT	3 cut(s)	36, 400, 490
StyD4I	CCNGG	2 cut(s)	419, 420
TaaI	ACNGT	2 cut(s)	175, 544
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	1 cut(s)	203
TasI	AATT	3 cut(s)	36, 400, 490
Tru1I	TTAA	3 cut(s)	107, 119, 180
Tru9I	TTAA	3 cut(s)	107, 119, 180
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	2 cut(s)	274, 364
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	1 cut(s)	363
TspMI	CCCGGG	1 cut(s)	420
XmaI	CCCGGG	1 cut(s)	420
ZraI	GACGTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.