Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008692

Physical Location & Seq

Genomic Coordinates Forward (+)

65866389 .. 65868853

Gene Structure 2465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27650

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAGTTATTTTGTGTGGACCAGCCCTTGGAATGGCTGCAGTTATTTTAAAAAACAAATGTTCTTTCCTGAGAAGGCCACAGCTCTAGCAACTGACATTATAAATGAACTGGTTCAGGAGCTGAAGGTCAAGCCTTGTCCTGTGGTCTTTGCTTCTTTCTCTGGTGGTCCAAAAGCTTGTATGTACCAAGTTCTTCAGATAATCGAGGGAATTTGTGAATCAAAACTGAATCTGGATGATTGCCGACTGGTTAGAGACTGTATATCAGGCCATATATATGATTCCAGCCCAGTGGATTTTACTAGTGATCTGGGTACTAAATTTGTTCTTCACCCAACTGTCCTGAAAATGTCCCATCCACCAAGAGTAGCATCATGGGTGGCACATGGCATTGCTTCTGGTCTTGATGCCCTCTTCCTCAACAGGTTTGAGTCACAGCGTGCCGAGTATTGGCAGACTCTCTACTCCACTGTTGGTATGAAGGCCCCGTACCTCATTTTATGCTCAGAGAATGATGATCTTGCTCCCTATCAAGTTATCTGTAATTTTGCTGAACGGTTACGAGAACTTGGGGCTGATGTAAAACTAGTAAAATGGAATGGCTCTCCGCACGTAGGTCATTATAGGCATTATCCAGTTGATTATAAGGCTGCTGTAACTGAGCTCCTTGGTAAAGCTGCTGGAGTCTATTCCCAGAGAATTAGACAAAGGGAAGGAGAAAGCTTGTGTGTGCAGGCAGGGCATGACGACGTTGTTGAGCCAATCAATAGCCTTAGGAAAGCTGCAGGAGCCTCAAATGGGTTCCGAGGAGTGATGTTGGCATCCAGTGATGACTTGTTGCCCACCTCAACAGAATATTACGGAGTTGGGTCTGTGCAAGATGAAGGTTTAATTCACCTGTCTGATGCACCAACGCCAACCATGAATGCCCATGGAGTTCTCGGTCAGGTTCTTTTCGACATCTGTGTTCCAAAAAACATCGAGAATTGGGATATAAAGTCATCGAGTTCTTTGAATGGGAATGGCCGCTCTTTTAGTTTTAGAAGAAGGCAAGCCCCTTTTAAACCCAATCAAGTGCATACGTCGCTCCAGACTATAATAAGGAGGATCATTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF829

Protein Analysis

372

Amino Acids

41.39

Weight (kDa)

7.14

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF829	PF05705	88 - 170	4.2e-12	Eukaryotic protein of unknown function (DUF829)
DUF829	PF05705	163 - 221	6.4e-10	Eukaryotic protein of unknown function (DUF829)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44250 AT5G44250
fragaria_vesca	FvH4_2g34600 FvH4_2g34600 FvH4_2g34600
malus_domestica	MD08G1103200.v1.1 MD15G1084500.v1.1
prunus_persica	Prupe.1G438200_v2.0.a1 Prupe.1G438200_v2.0.a1
pyrus_communis	pycom08g08460 pycom15g07980
rosa_chinensis	RchiOBHm_Chr6g0307551 RchiOBHm_Chr6g0307701
rosa_laevigata	RLG00000010707
rosa_multiflora	Rmu_co8500775.1_g000001
rosa_rugosa	Rorug06G0359600 Rorug06G0359700 Rorug06G0359800
rosa_samantha	Rh6AG469100 Rh6BG479700 Rh6CG485300 Rh6DG471900
rosa_wichuraiana	Rw6G040960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	101, 645
AccB7I	CCANNNNNTGG	1 cut(s)	27
AccBSI	CCGCTC	1 cut(s)	1029
AciI	CCGC	2 cut(s)	608, 1027
AclWI	GGATC	1 cut(s)	1115
AcoI	YGGCCR	1 cut(s)	1024
AcsI	RAATTY	2 cut(s)	210, 320
AcuI	CTGAAG	2 cut(s)	143, 179
AdeI	CACNNNGTG	1 cut(s)	440
AfaI	GTAC	3 cut(s)	185, 316, 491
AfiI	CCNNNNNNNGG	5 cut(s)	27, 32, 450, 614, 798
AgsI	TTSAA	1 cut(s)	1015
AhlI	ACTAGT	2 cut(s)	302, 586
AluBI	AGCT	7 cut(s)	83, 121, 176, 664, 677, 723, 782
AluI	AGCT	7 cut(s)	83, 121, 176, 664, 677, 723, 782
Alw21I	GWGCWC	1 cut(s)	666
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	1115
AlwNI	CAGNNNCTG	1 cut(s)	121
AoxI	GGCC	4 cut(s)	75, 268, 483, 1024
ApeKI	GCWGC	4 cut(s)	36, 650, 677, 782
ApoI	RAATTY	2 cut(s)	210, 320
Asp700I	GAANNNNTTC	1 cut(s)	111
AspS9I	GGNCC	3 cut(s)	18, 167, 484
AsuHPI	GGTGA	2 cut(s)	323, 887
AvaII	GGWCC	2 cut(s)	18, 167
AxyI	CCTNAGG	1 cut(s)	773
BanII	GRGCYC	1 cut(s)	666
BarI	GAAGNNNNNNTAC	2 cut(s)	473, 505
Bbv12I	GWGCWC	1 cut(s)	666
BbvI	GCAGC	4 cut(s)	23, 637, 664, 769
BccI	CCATC	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	249
BcuI	ACTAGT	2 cut(s)	302, 586
BfaI	CTAG	3 cut(s)	86, 303, 587
BfmI	CTRYAG	2 cut(s)	37, 783
BisI	GCNGC	5 cut(s)	37, 651, 678, 783, 1027
BlsI	GCNGC	5 cut(s)	38, 652, 679, 784, 1028
Bme18I	GGWCC	2 cut(s)	18, 167
BmgT120I	GGNCC	3 cut(s)	18, 167, 484
BmiI	GGNNCC	3 cut(s)	486, 790, 803
BmrI	ACTGGG	1 cut(s)	284
BmsI	GCATC	4 cut(s)	380, 397, 830, 895
BmuI	ACTGGG	1 cut(s)	284
BpmI	CTGGAG	2 cut(s)	702, 1073
BsaAI	YACGTR	1 cut(s)	613
BsaBI	GATNNNNATC	1 cut(s)	1112
BsaJI	CCNNGG	4 cut(s)	26, 667, 805, 931
Bsc4I	CCNNNNNNNGG	5 cut(s)	27, 32, 450, 614, 798
Bse1I	ACTGG	5 cut(s)	114, 252, 290, 635, 825
Bse21I	CCTNAGG	1 cut(s)	773
Bse3DI	GCAATG	1 cut(s)	390
Bse8I	GATNNNNATC	1 cut(s)	1112
BseDI	CCNNGG	4 cut(s)	26, 667, 805, 931
BseGI	GGATG	3 cut(s)	241, 355, 821
BseJI	GATNNNNATC	1 cut(s)	1112
BseLI	CCNNNNNNNGG	5 cut(s)	27, 32, 450, 614, 798
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	3 cut(s)	60, 519, 651
BseNI	ACTGG	5 cut(s)	114, 252, 290, 635, 825
BseRI	GAGGAG	1 cut(s)	822
BseXI	GCAGC	4 cut(s)	23, 637, 664, 769
BsgI	GTGCAG	1 cut(s)	752
BshFI	GGCC	4 cut(s)	77, 270, 485, 1026
BsiHKAI	GWGCWC	1 cut(s)	666
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	5 cut(s)	27, 32, 450, 614, 798
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	931
BsnI	GGCC	4 cut(s)	77, 270, 485, 1026
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp143I	GATC	3 cut(s)	307, 517, 1107
Bsp19I	CCATGG	1 cut(s)	931
BspACI	CCGC	2 cut(s)	608, 1027
BspANI	GGCC	4 cut(s)	77, 270, 485, 1026
BspCNI	CTCAG	3 cut(s)	61, 518, 652
BspLI	GGNNCC	3 cut(s)	486, 790, 803
BspMAI	CTGCAG	2 cut(s)	41, 787
BspPI	GGATC	1 cut(s)	1115
BsrBI	CCGCTC	1 cut(s)	1029
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	5 cut(s)	114, 252, 290, 635, 825
BssECI	CCNNGG	4 cut(s)	26, 667, 805, 931
BssMI	GATC	3 cut(s)	307, 517, 1107
BssT1I	CCWWGG	3 cut(s)	26, 667, 931
Bst4CI	ACNGT	4 cut(s)	260, 340, 472, 558
Bst6I	CTCTTC	1 cut(s)	419
BstBAI	YACGTR	1 cut(s)	613
BstC8I	GCNNGC	3 cut(s)	441, 735, 1053
BstDEI	CTNAG	4 cut(s)	69, 505, 660, 773
BstDSI	CCRYGG	1 cut(s)	931
BstF5I	GGATG	3 cut(s)	241, 355, 821
BstKTI	GATC	3 cut(s)	310, 520, 1110
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	3 cut(s)	307, 517, 1107
BstMWI	GCNNNNNNNGC	3 cut(s)	739, 788, 1084
BstSFI	CTRYAG	2 cut(s)	37, 783
BstV1I	GCAGC	4 cut(s)	23, 637, 664, 769
BstXI	CCANNNNNNTGG	1 cut(s)	292
Bsu36I	CCTNAGG	1 cut(s)	773
BsuRI	GGCC	4 cut(s)	77, 270, 485, 1026
BtgI	CCRYGG	1 cut(s)	931
BtsCI	GGATG	3 cut(s)	241, 355, 821
BtsIMutI	CAGTG	3 cut(s)	297, 468, 832
Cac8I	GCNNGC	3 cut(s)	441, 735, 1053
CaiI	CAGNNNCTG	1 cut(s)	121
Cfr13I	GGNCC	3 cut(s)	18, 167, 484
Csp6I	GTAC	3 cut(s)	184, 315, 490
CviAII	CATG	5 cut(s)	375, 386, 743, 922, 932
CviQI	GTAC	3 cut(s)	184, 315, 490
DdeI	CTNAG	4 cut(s)	69, 505, 660, 773
DpnI	GATC	3 cut(s)	309, 519, 1109
DpnII	GATC	3 cut(s)	307, 517, 1107
DraI	TTTAAA	2 cut(s)	49, 1063
DraIII	CACNNNGTG	1 cut(s)	440
EaeI	YGGCCR	1 cut(s)	1024
Eam1104I	CTCTTC	1 cut(s)	419
EarI	CTCTTC	1 cut(s)	419
Ecl136II	GAGCTC	1 cut(s)	664
Eco130I	CCWWGG	3 cut(s)	26, 667, 931
Eco24I	GRGCYC	1 cut(s)	666
Eco47I	GGWCC	2 cut(s)	18, 167
Eco53kI	GAGCTC	1 cut(s)	664
Eco57I	CTGAAG	2 cut(s)	143, 179
Eco81I	CCTNAGG	1 cut(s)	773
EcoICRI	GAGCTC	1 cut(s)	664
EcoO109I	RGGNCCY	1 cut(s)	484
EcoT14I	CCWWGG	3 cut(s)	26, 667, 931
EcoT38I	GRGCYC	1 cut(s)	666
ErhI	CCWWGG	3 cut(s)	26, 667, 931
FaeI	CATG	5 cut(s)	378, 389, 746, 925, 935
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	5 cut(s)	374, 385, 742, 921, 931
Fnu4HI	GCNGC	5 cut(s)	37, 651, 678, 783, 1027
FokI	GGATG	3 cut(s)	248, 342, 808
FriOI	GRGCYC	1 cut(s)	666
Fsp4HI	GCNGC	5 cut(s)	37, 651, 678, 783, 1027
FspBI	CTAG	3 cut(s)	86, 303, 587
GluI	GCNGC	5 cut(s)	37, 651, 678, 783, 1027
GsuI	CTGGAG	2 cut(s)	702, 1073
HaeIII	GGCC	4 cut(s)	77, 270, 485, 1026
Hin1II	CATG	5 cut(s)	378, 389, 746, 925, 935
HindIII	AAGCTT	2 cut(s)	174, 721
HinfI	GANTC	6 cut(s)	218, 229, 281, 431, 457, 684
HphI	GGTGA	2 cut(s)	323, 887
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	4 cut(s)	198, 508, 806, 904
Hpy188III	TCNNGA	7 cut(s)	68, 116, 233, 343, 404, 982, 1090
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	2 cut(s)	752, 1087
HpyAV	CCTTC	6 cut(s)	67, 118, 475, 707, 878, 1041
HpyCH4III	ACNGT	4 cut(s)	260, 340, 472, 558
HpyCH4IV	ACGT	3 cut(s)	612, 750, 1082
HpyCH4V	TGCA	6 cut(s)	39, 733, 785, 877, 908, 1078
HpyF10VI	GCNNNNNNNGC	3 cut(s)	739, 788, 1084
HpyF3I	CTNAG	4 cut(s)	69, 505, 660, 773
HpySE526I	ACGT	3 cut(s)	612, 750, 1082
Hsp92II	CATG	5 cut(s)	378, 389, 746, 925, 935
Kzo9I	GATC	3 cut(s)	307, 517, 1107
LmnI	GCTCC	5 cut(s)	118, 529, 669, 788, 1092
Lsp1109I	GCAGC	4 cut(s)	23, 637, 664, 769
LweI	GCATC	4 cut(s)	380, 397, 830, 895
MaeI	CTAG	3 cut(s)	86, 303, 587
MaeII	ACGT	3 cut(s)	612, 750, 1082
MaeIII	GTNAC	3 cut(s)	432, 558, 655
MalI	GATC	3 cut(s)	309, 519, 1109
MbiI	CCGCTC	1 cut(s)	1029
MboI	GATC	3 cut(s)	307, 517, 1107
MboII	GAAGA	4 cut(s)	185, 320, 406, 1056
MhlI	GDGCHC	1 cut(s)	666
MluCI	AATT	6 cut(s)	210, 320, 544, 699, 891, 985
MlyI	GAGTC	3 cut(s)	440, 451, 693
MnlI	CCTC	8 cut(s)	199, 422, 428, 503, 800, 802, 856, 1098
MroXI	GAANNNNTTC	1 cut(s)	111
MseI	TTAA	3 cut(s)	48, 890, 1062
MslI	CAYNNNNRTG	1 cut(s)	276
Mva1269I	GAATGC	1 cut(s)	931
MwoI	GCNNNNNNNGC	3 cut(s)	739, 788, 1084
NcoI	CCATGG	1 cut(s)	931
NdeII	GATC	3 cut(s)	307, 517, 1107
NlaIII	CATG	5 cut(s)	378, 389, 746, 925, 935
NlaIV	GGNNCC	3 cut(s)	486, 790, 803
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	1 cut(s)	432
PctI	GAATGC	1 cut(s)	931
PdmI	GAANNNNTTC	1 cut(s)	111
PfeI	GAWTC	3 cut(s)	218, 229, 281
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	5 cut(s)	38, 652, 679, 784, 1028
PleI	GAGTC	3 cut(s)	439, 451, 692
PpsI	GAGTC	3 cut(s)	439, 451, 692
Ppu21I	YACGTR	1 cut(s)	613
PsiI	TTATAA	2 cut(s)	101, 645
Psp124BI	GAGCTC	1 cut(s)	666
PspN4I	GGNNCC	3 cut(s)	486, 790, 803
PspPI	GGNCC	3 cut(s)	18, 167, 484
PstI	CTGCAG	2 cut(s)	41, 787
PstNI	CAGNNNCTG	1 cut(s)	121
RsaI	GTAC	3 cut(s)	185, 316, 491
RsaNI	GTAC	3 cut(s)	184, 315, 490
RseI	CAYNNNNRTG	1 cut(s)	276
SacI	GAGCTC	1 cut(s)	666
SaqAI	TTAA	3 cut(s)	48, 890, 1062
SatI	GCNGC	5 cut(s)	37, 651, 678, 783, 1027
Sau3AI	GATC	3 cut(s)	307, 517, 1107
Sau96I	GGNCC	3 cut(s)	18, 167, 484
SchI	GAGTC	3 cut(s)	440, 451, 693
SduI	GDGCHC	1 cut(s)	666
SfaNI	GCATC	4 cut(s)	380, 397, 830, 895
SfcI	CTRYAG	2 cut(s)	37, 783
SinI	GGWCC	2 cut(s)	18, 167
SmiMI	CAYNNNNRTG	1 cut(s)	276
SpeI	ACTAGT	2 cut(s)	302, 586
Sse9I	AATT	6 cut(s)	210, 320, 544, 699, 891, 985
SsiI	CCGC	2 cut(s)	608, 1027
SspI	AATATT	1 cut(s)	857
SspMI	CTAG	3 cut(s)	86, 303, 587
SstI	GAGCTC	1 cut(s)	666
StyI	CCWWGG	3 cut(s)	26, 667, 931
TaaI	ACNGT	4 cut(s)	260, 340, 472, 558
TaiI	ACGT	3 cut(s)	615, 753, 1085
TaqI	TCGA	4 cut(s)	204, 957, 981, 1004
TaqII	GACCGA	1 cut(s)	932
TasI	AATT	6 cut(s)	210, 320, 544, 699, 891, 985
TauI	GCSGC	1 cut(s)	1029
TfiI	GAWTC	3 cut(s)	218, 229, 281
Tru1I	TTAA	3 cut(s)	48, 890, 1062
Tru9I	TTAA	3 cut(s)	48, 890, 1062
TscAI	CASTG	3 cut(s)	297, 475, 832
TseFI	GTSAC	1 cut(s)	432
TseI	GCWGC	4 cut(s)	36, 650, 677, 782
Tsp45I	GTSAC	1 cut(s)	432
TspDTI	ATGAA	4 cut(s)	120, 494, 897, 938
TspGWI	ACGGA	1 cut(s)	876
TspRI	CASTG	3 cut(s)	297, 475, 832
Van91I	CCANNNNNTGG	1 cut(s)	27
VpaK11BI	GGWCC	2 cut(s)	18, 167
XapI	RAATTY	2 cut(s)	210, 320
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	3 cut(s)	86, 303, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.