Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008692

Physical Location & Seq

Genomic Coordinates Forward (+)

63844033 .. 63847247

Gene Structure 3215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG471900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTGGGGATTTGGGGGTAGGTATTATTGGGGGAGAAAAGAGAGGAGGAGTGATGGAACTGAAGGGATAGTGGTGGTGTTTGCATGGATGTCCAGCGAAGAGAAGCATTTGAAGAGCTATGTGCAGCTCTACTCCTCTCTGGGTTGGAACTCACTCGTCTGCCACTCTCAATTTCTCAATATGTTCTTTCCTGAGAAGGCCACAGCTCTAGCAACTGATATTATAAAGGAACTGGTTCAGGATGATTGCCGACTGGTTAGAGACTGTATATCAGGCCATATATATGATTCCTGCCCAGTGGATTTTACTAGTGATCTGGGTACTAAATTTGTTCTTCACCCAACTGTCCTGAAAATGTCCCATCCACCAAGAGTAGCATCATGGGTGGCACATGGCATTGCTTCTGGTCTTGATGCCCTCTTCCTCAACAGGTTTGAGTCACAGCGTGCTGAGTATTGGCAGACTCTCTACTCCACTGTTGGTATGAAGGCCCCGTATCTCATTTTATGCTCAGAGAATGACGATCTTGCTCCCTATCAAGTTATCTGTAATTTTGCTGAACGGTTACGAGAACTTGGGGCTGATGTAAAACTAGTAAAATGGAATGGCTCTCCGCACGTAGGTCATTATAGGCATTATCCAGTTGATTATAAGGCTGCTGTAACTGAGCTCCTTGGTAAAGCAGCTGGAGTCTATTCCCAGAGAATTAGACAAAGGGAAGGAGAAAGCTTGTGTGTGCAGGCAGGGCACGACGACGTTGTTGAGCCAATCAACAGCCTTAGGAAAGCTGCAGGAGCCTCAAATGGGTTCCGAGGAGTGATGTTGGCATCCAGTGATGACTTCTTGGCCACCTCAACAGAATATTACGGTGTTGGGTCTGTGCAAGATGAAGGTTTAATTCACCTGTCTGACCCACCAACGCCAACCATGAATGCCCATGGAGTTCTCGGTCAGGTTCTTTTCGACATCTGTGTTCCAAAAAACATCGAGAATTGGGATATAAAGTCATCGAGTTCTAGTTCTTTGAATGGGAATGGCCGCTCTTTTAGTTTTAGAAGAAGGCAAGCCCCTTTAAACCCAATCAAGTGCATACGTCGCTCCAGACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF829

Protein Analysis

369

Amino Acids

41.3

Weight (kDa)

7.62

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF829	PF05705	23 - 81	7.4e-07	Eukaryotic protein of unknown function (DUF829)
DUF829	PF05705	90 - 188	5.2e-14	Eukaryotic protein of unknown function (DUF829)
DUF829	PF05705	165 - 223	6.3e-10	Eukaryotic protein of unknown function (DUF829)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44250 AT5G44250
fragaria_vesca	FvH4_2g34600 FvH4_2g34600 FvH4_2g34600
malus_domestica	MD08G1103200.v1.1 MD15G1084500.v1.1
prunus_persica	Prupe.1G438200_v2.0.a1 Prupe.1G438200_v2.0.a1
pyrus_communis	pycom08g08460 pycom15g07980
rosa_chinensis	RchiOBHm_Chr6g0307551 RchiOBHm_Chr6g0307701
rosa_laevigata	RLG00000010707
rosa_multiflora	Rmu_co8500775.1_g000001
rosa_rugosa	Rorug06G0359600 Rorug06G0359700 Rorug06G0359800
rosa_samantha	Rh6AG469100 Rh6BG479700 Rh6CG485300 Rh6DG471900
rosa_wichuraiana	Rw6G040960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	224, 651
AccBSI	CCGCTC	1 cut(s)	1041
AciI	CCGC	2 cut(s)	614, 1039
AcoI	YGGCCR	2 cut(s)	846, 1036
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	81
AdeI	CACNNNGTG	1 cut(s)	446
AfaI	GTAC	1 cut(s)	322
AfiI	CCNNNNNNNGG	2 cut(s)	620, 804
AgsI	TTSAA	2 cut(s)	112, 1027
AhlI	ACTAGT	2 cut(s)	308, 592
AluBI	AGCT	7 cut(s)	117, 127, 206, 670, 686, 729, 788
AluI	AGCT	7 cut(s)	117, 127, 206, 670, 686, 729, 788
Alw21I	GWGCWC	1 cut(s)	672
Alw26I	GTCTC	1 cut(s)	255
AoxI	GGCC	5 cut(s)	198, 274, 489, 846, 1036
ApeKI	GCWGC	4 cut(s)	124, 656, 683, 788
ApoI	RAATTY	1 cut(s)	326
Asp700I	GAANNNNTTC	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	490
AsuHPI	GGTGA	2 cut(s)	329, 893
AxyI	CCTNAGG	1 cut(s)	779
BaeGI	GKGCMC	1 cut(s)	750
BalI	TGGCCA	1 cut(s)	848
BanII	GRGCYC	1 cut(s)	672
Bbv12I	GWGCWC	1 cut(s)	672
BbvI	GCAGC	4 cut(s)	136, 643, 695, 775
BccI	CCATC	2 cut(s)	47, 369
BcoDI	GTCTC	1 cut(s)	255
BcuI	ACTAGT	2 cut(s)	308, 592
BfaI	CTAG	4 cut(s)	209, 309, 593, 1017
BfmI	CTRYAG	1 cut(s)	789
BisI	GCNGC	5 cut(s)	125, 657, 684, 789, 1039
BlsI	GCNGC	5 cut(s)	126, 658, 685, 790, 1040
BmgT120I	GGNCC	1 cut(s)	490
BmiI	GGNNCC	3 cut(s)	492, 796, 809
BmrI	ACTGGG	1 cut(s)	290
BmsI	GCATC	3 cut(s)	386, 403, 836
BmuI	ACTGGG	1 cut(s)	290
BpmI	CTGGAG	2 cut(s)	708, 1084
BsaAI	YACGTR	1 cut(s)	619
BsaJI	CCNNGG	3 cut(s)	673, 811, 937
Bsc4I	CCNNNNNNNGG	2 cut(s)	620, 804
Bse1I	ACTGG	5 cut(s)	237, 258, 296, 641, 831
Bse21I	CCTNAGG	1 cut(s)	779
Bse3DI	GCAATG	1 cut(s)	396
BseDI	CCNNGG	3 cut(s)	673, 811, 937
BseGI	GGATG	4 cut(s)	93, 247, 361, 827
BseLI	CCNNNNNNNGG	2 cut(s)	620, 804
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	4 cut(s)	183, 441, 525, 657
BseNI	ACTGG	5 cut(s)	237, 258, 296, 641, 831
BseRI	GAGGAG	4 cut(s)	58, 61, 124, 828
BseSI	GKGCMC	1 cut(s)	750
BseXI	GCAGC	4 cut(s)	136, 643, 695, 775
BsgI	GTGCAG	2 cut(s)	143, 758
BshFI	GGCC	5 cut(s)	200, 276, 491, 848, 1038
BsiHKAI	GWGCWC	1 cut(s)	672
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	2 cut(s)	620, 804
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	937
BsnI	GGCC	5 cut(s)	200, 276, 491, 848, 1038
Bsp1286I	GDGCHC	2 cut(s)	672, 750
Bsp143I	GATC	2 cut(s)	313, 523
Bsp19I	CCATGG	1 cut(s)	937
BspACI	CCGC	2 cut(s)	614, 1039
BspANI	GGCC	5 cut(s)	200, 276, 491, 848, 1038
BspCNI	CTCAG	4 cut(s)	184, 442, 524, 658
BspLI	GGNNCC	3 cut(s)	492, 796, 809
BspMAI	CTGCAG	1 cut(s)	793
BspQI	GCTCTTC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	1041
BsrDI	GCAATG	1 cut(s)	396
BsrI	ACTGG	5 cut(s)	237, 258, 296, 641, 831
BssECI	CCNNGG	3 cut(s)	673, 811, 937
BssMI	GATC	2 cut(s)	313, 523
BssT1I	CCWWGG	2 cut(s)	673, 937
Bst4CI	ACNGT	5 cut(s)	266, 346, 478, 564, 869
Bst6I	CTCTTC	3 cut(s)	93, 107, 425
BstBAI	YACGTR	1 cut(s)	619
BstC8I	GCNNGC	3 cut(s)	447, 741, 1065
BstDEI	CTNAG	5 cut(s)	192, 450, 511, 666, 779
BstDSI	CCRYGG	1 cut(s)	937
BstF5I	GGATG	4 cut(s)	93, 247, 361, 827
BstKTI	GATC	2 cut(s)	316, 526
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	2 cut(s)	313, 523
BstMWI	GCNNNNNNNGC	3 cut(s)	745, 794, 1095
BstSFI	CTRYAG	1 cut(s)	789
BstSLI	GKGCMC	1 cut(s)	750
BstV1I	GCAGC	4 cut(s)	136, 643, 695, 775
Bsu36I	CCTNAGG	1 cut(s)	779
BsuRI	GGCC	5 cut(s)	200, 276, 491, 848, 1038
BtgI	CCRYGG	1 cut(s)	937
BtsCI	GGATG	4 cut(s)	93, 247, 361, 827
BtsIMutI	CAGTG	3 cut(s)	303, 474, 838
Cac8I	GCNNGC	3 cut(s)	447, 741, 1065
Cfr13I	GGNCC	1 cut(s)	490
Csp6I	GTAC	1 cut(s)	321
CviAII	CATG	5 cut(s)	84, 381, 392, 928, 938
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	5 cut(s)	192, 450, 511, 666, 779
DpnI	GATC	2 cut(s)	315, 525
DpnII	GATC	2 cut(s)	313, 523
DraI	TTTAAA	1 cut(s)	1074
DraIII	CACNNNGTG	1 cut(s)	446
EaeI	YGGCCR	2 cut(s)	846, 1036
Eam1104I	CTCTTC	3 cut(s)	93, 107, 425
EarI	CTCTTC	3 cut(s)	93, 107, 425
Ecl136II	GAGCTC	1 cut(s)	670
Eco130I	CCWWGG	2 cut(s)	673, 937
Eco24I	GRGCYC	1 cut(s)	672
Eco53kI	GAGCTC	1 cut(s)	670
Eco57I	CTGAAG	1 cut(s)	81
Eco81I	CCTNAGG	1 cut(s)	779
EcoICRI	GAGCTC	1 cut(s)	670
EcoO109I	RGGNCCY	1 cut(s)	490
EcoT14I	CCWWGG	2 cut(s)	673, 937
EcoT38I	GRGCYC	1 cut(s)	672
ErhI	CCWWGG	2 cut(s)	673, 937
FaeI	CATG	5 cut(s)	87, 384, 395, 931, 941
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	5 cut(s)	83, 380, 391, 927, 937
Fnu4HI	GCNGC	5 cut(s)	125, 657, 684, 789, 1039
FokI	GGATG	4 cut(s)	100, 254, 348, 814
FriOI	GRGCYC	1 cut(s)	672
Fsp4HI	GCNGC	5 cut(s)	125, 657, 684, 789, 1039
FspBI	CTAG	4 cut(s)	209, 309, 593, 1017
GluI	GCNGC	5 cut(s)	125, 657, 684, 789, 1039
GsuI	CTGGAG	2 cut(s)	708, 1084
HaeIII	GGCC	5 cut(s)	200, 276, 491, 848, 1038
Hin1II	CATG	5 cut(s)	87, 384, 395, 931, 941
HindIII	AAGCTT	1 cut(s)	727
HinfI	GANTC	4 cut(s)	287, 437, 463, 690
HphI	GGTGA	2 cut(s)	329, 893
Hpy188I	TCNGA	3 cut(s)	514, 812, 910
Hpy188III	TCNNGA	6 cut(s)	191, 239, 349, 410, 988, 1101
Hpy99I	CGWCG	3 cut(s)	755, 758, 1098
HpyAV	CCTTC	6 cut(s)	56, 190, 481, 713, 884, 1053
HpyCH4III	ACNGT	5 cut(s)	266, 346, 478, 564, 869
HpyCH4IV	ACGT	3 cut(s)	618, 756, 1093
HpyCH4V	TGCA	6 cut(s)	83, 124, 739, 791, 883, 1089
HpyF10VI	GCNNNNNNNGC	3 cut(s)	745, 794, 1095
HpyF3I	CTNAG	5 cut(s)	192, 450, 511, 666, 779
HpySE526I	ACGT	3 cut(s)	618, 756, 1093
Hsp92II	CATG	5 cut(s)	87, 384, 395, 931, 941
Kzo9I	GATC	2 cut(s)	313, 523
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	4 cut(s)	535, 675, 794, 1103
Lsp1109I	GCAGC	4 cut(s)	136, 643, 695, 775
LweI	GCATC	3 cut(s)	386, 403, 836
MaeI	CTAG	4 cut(s)	209, 309, 593, 1017
MaeII	ACGT	3 cut(s)	618, 756, 1093
MaeIII	GTNAC	3 cut(s)	438, 564, 661
MalI	GATC	2 cut(s)	315, 525
MbiI	CCGCTC	1 cut(s)	1041
MboI	GATC	2 cut(s)	313, 523
MboII	GAAGA	5 cut(s)	110, 124, 326, 412, 1068
MhlI	GDGCHC	2 cut(s)	672, 750
MlsI	TGGCCA	1 cut(s)	848
MluCI	AATT	6 cut(s)	170, 326, 550, 705, 897, 991
MluNI	TGGCCA	1 cut(s)	848
MlyI	GAGTC	3 cut(s)	446, 457, 699
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	8 cut(s)	36, 39, 145, 428, 434, 806, 808, 862
Mox20I	TGGCCA	1 cut(s)	848
MroXI	GAANNNNTTC	1 cut(s)	234
MscI	TGGCCA	1 cut(s)	848
MseI	TTAA	2 cut(s)	896, 1073
MslI	CAYNNNNRTG	1 cut(s)	282
Msp20I	TGGCCA	1 cut(s)	848
MspA1I	CMGCKG	1 cut(s)	686
Mva1269I	GAATGC	1 cut(s)	937
MwoI	GCNNNNNNNGC	3 cut(s)	745, 794, 1095
NcoI	CCATGG	1 cut(s)	937
NdeII	GATC	2 cut(s)	313, 523
NlaIII	CATG	5 cut(s)	87, 384, 395, 931, 941
NlaIV	GGNNCC	3 cut(s)	492, 796, 809
NmuCI	GTSAC	1 cut(s)	438
PciSI	GCTCTTC	1 cut(s)	107
PctI	GAATGC	1 cut(s)	937
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	5 cut(s)	126, 658, 685, 790, 1040
PleI	GAGTC	3 cut(s)	445, 457, 698
PpsI	GAGTC	3 cut(s)	445, 457, 698
Ppu21I	YACGTR	1 cut(s)	619
PsiI	TTATAA	2 cut(s)	224, 651
Psp124BI	GAGCTC	1 cut(s)	672
PspN4I	GGNNCC	3 cut(s)	492, 796, 809
PspPI	GGNCC	1 cut(s)	490
PstI	CTGCAG	1 cut(s)	793
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
RseI	CAYNNNNRTG	1 cut(s)	282
SacI	GAGCTC	1 cut(s)	672
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	896, 1073
SatI	GCNGC	5 cut(s)	125, 657, 684, 789, 1039
Sau3AI	GATC	2 cut(s)	313, 523
Sau96I	GGNCC	1 cut(s)	490
SchI	GAGTC	3 cut(s)	446, 457, 699
SduI	GDGCHC	2 cut(s)	672, 750
SfaNI	GCATC	3 cut(s)	386, 403, 836
SfcI	CTRYAG	1 cut(s)	789
SmiMI	CAYNNNNRTG	1 cut(s)	282
SpeI	ACTAGT	2 cut(s)	308, 592
Sse9I	AATT	6 cut(s)	170, 326, 550, 705, 897, 991
SsiI	CCGC	2 cut(s)	614, 1039
SspI	AATATT	1 cut(s)	863
SspMI	CTAG	4 cut(s)	209, 309, 593, 1017
SstI	GAGCTC	1 cut(s)	672
StyI	CCWWGG	2 cut(s)	673, 937
TaaI	ACNGT	5 cut(s)	266, 346, 478, 564, 869
TaiI	ACGT	3 cut(s)	621, 759, 1096
TaqI	TCGA	3 cut(s)	963, 987, 1010
TaqII	GACCGA	1 cut(s)	938
TasI	AATT	6 cut(s)	170, 326, 550, 705, 897, 991
TauI	GCSGC	1 cut(s)	1041
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	2 cut(s)	896, 1073
Tru9I	TTAA	2 cut(s)	896, 1073
TscAI	CASTG	3 cut(s)	303, 481, 838
TseFI	GTSAC	1 cut(s)	438
TseI	GCWGC	4 cut(s)	124, 656, 683, 788
Tsp45I	GTSAC	1 cut(s)	438
TspDTI	ATGAA	3 cut(s)	500, 903, 944
TspRI	CASTG	3 cut(s)	303, 481, 838
XapI	RAATTY	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	4 cut(s)	209, 309, 593, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.