Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008692

Physical Location & Seq

Genomic Coordinates Reverse (-)

25660151 .. 25664124

Gene Structure 3974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34600.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGTGGGGATTTGGGGGTCGGTATTATTGGGGAAGAAAAGAGAGGAGGAAGGATGGGATTGAAGGGATAGTGGTGGTGTTCGCATGGATGTCTAGCGATGAGAAGCATTTGAAGAACTATGTGCAGCTCTACTCGTCTTTGGGTTGGAACTCGTTAGTCTGCCACTCTCAGTTTCTCAATATGTTCTTCCCTGAGAAGGCCACAACTCTAGCAACTGATATTATAAATGAACTTGTTCAGGAGCTGAAGGTTAAGCCTTGCCCAGTGGTCTTTGCTTCTTTTTCTGGTGGTCCAAAAGCTTGTATGTACCAAGTTCTTCAGATAATTGAGGGAATTTGTGAATCGAAACTGAATCTGGATGACTGTCGACTGGTTAGAGACTGTATATCGGGCCATATATATGATTCCAGCCCAGTGGATTTTACTAGTGATCTCGGTACTAAATTTGTTCTTCACCCAACTGTCCTGAAAATGTCCCATCCACCAAGAGTAGCATCATGGGTGGCACATGGCATTGCTTCTGGTCTTGATGCTCTCTTCCTCAGCAGGTTCGAGTCACAACGTGCCGAGTATTGGCAGACTCTCTACTCCACTGTTGGTATGAAGGCTCCGTATCTCATTTTATGCTCAGAAAATGACGATCTTGCTCCCTATCAAGTCATCTGTAATTTTGCTGAACGCTTACGAGAACTTGGGGCAGATGTAAAACTATTAAAATGGAATGGCTCTCCTCATGTAGGTCATTTTAGGCATTATCCAATTGATTACAAGGCTGCTGTAACTGAGCTCCTTGGTAAAGCAGCTGGAGTCTATTCCCAGAGAATTAGACAACTGGAAGGAGAAAGCTTGTGTGTGCAGGCAGGTCATGACGACGTGGTTGAGCCAATCAGTAGCCTTAGGAAAGCTGCAGGAGCCTCAAATGGGTTCCGAGGAGTGATATTGGCATCCAGTGATGACTTCTTGCCCACCTCAACAGAATATTACGGAGTAGGGTCTGTGCAAGATGAAGGTTTAATTCACCTCTCTGACCCAGCAACGCCAACCATAAATGCCCATGGAGTTCTCGGTCAGGTTCTTTTCGACGTCTGTGTTCCAAAAAACATCGAGAATTGGGACATAAAATCAAGTTCCTTGAATGGAAATGGCCGCTCATTTAGCTTTAGAAGAAGGCAAGCCCCTTTAAACCCAATCAAGTGCATACGTCGCTCAAGACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF829

Protein Analysis

406

Amino Acids

45.19

Weight (kDa)

7.57

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF829	PF05705	23 - 107	1.7e-09	Eukaryotic protein of unknown function (DUF829)
DUF829	PF05705	129 - 198	1.3e-08	Eukaryotic protein of unknown function (DUF829)
DUF829	PF05705	214 - 280	9e-10	Eukaryotic protein of unknown function (DUF829)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44250 AT5G44250
fragaria_vesca	FvH4_2g34600 FvH4_2g34600 FvH4_2g34600
malus_domestica	MD08G1103200.v1.1 MD15G1084500.v1.1
prunus_persica	Prupe.1G438200_v2.0.a1 Prupe.1G438200_v2.0.a1
pyrus_communis	pycom08g08460 pycom15g07980
rosa_chinensis	RchiOBHm_Chr6g0307551 RchiOBHm_Chr6g0307701
rosa_laevigata	RLG00000010707
rosa_multiflora	Rmu_co8500775.1_g000001
rosa_rugosa	Rorug06G0359600 Rorug06G0359700 Rorug06G0359800
rosa_samantha	Rh6AG469100 Rh6BG479700 Rh6CG485300 Rh6DG471900
rosa_wichuraiana	Rw6G040960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	224
AatII	GACGTC	1 cut(s)	1086
Acc36I	ACCTGC	2 cut(s)	537, 851
AccBSI	CCGCTC	1 cut(s)	1149
AccI	GTMKAC	1 cut(s)	367
AciI	CCGC	1 cut(s)	1147
AcoI	YGGCCR	1 cut(s)	1144
AcsI	RAATTY	2 cut(s)	333, 443
AcuI	CTGAAG	2 cut(s)	266, 302
AcyI	GRCGYC	1 cut(s)	1083
AdeI	CACNNNGTG	1 cut(s)	563
AfaI	GTAC	2 cut(s)	308, 439
AfiI	CCNNNNNNNGG	4 cut(s)	196, 573, 737, 921
AgsI	TTSAA	3 cut(s)	62, 112, 1135
AhlI	ACTAGT	1 cut(s)	425
AjiI	CACGTC	1 cut(s)	874
AluBI	AGCT	8 cut(s)	127, 244, 299, 787, 803, 846, 905, 1158
AluI	AGCT	8 cut(s)	127, 244, 299, 787, 803, 846, 905, 1158
Alw21I	GWGCWC	1 cut(s)	789
Alw26I	GTCTC	1 cut(s)	372
AlwNI	CAGNNNCTG	1 cut(s)	244
AoxI	GGCC	3 cut(s)	198, 391, 1144
ApeKI	GCWGC	4 cut(s)	124, 773, 800, 905
ApoI	RAATTY	2 cut(s)	333, 443
Asp700I	GAANNNNTTC	1 cut(s)	234
AspS9I	GGNCC	2 cut(s)	290, 391
AsuHPI	GGTGA	2 cut(s)	446, 1010
AvaII	GGWCC	1 cut(s)	290
AxyI	CCTNAGG	1 cut(s)	896
BanII	GRGCYC	1 cut(s)	789
Bbv12I	GWGCWC	1 cut(s)	789
BbvCI	CCTCAGC	1 cut(s)	542
BbvI	GCAGC	4 cut(s)	136, 760, 812, 892
BccI	CCATC	2 cut(s)	47, 486
BcoDI	GTCTC	1 cut(s)	372
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	3 cut(s)	93, 209, 426
BfmI	CTRYAG	1 cut(s)	906
BfuAI	ACCTGC	2 cut(s)	537, 851
BisI	GCNGC	5 cut(s)	125, 774, 801, 906, 1147
BlsI	GCNGC	5 cut(s)	126, 775, 802, 907, 1148
Bme18I	GGWCC	1 cut(s)	290
BmgBI	CACGTC	1 cut(s)	874
BmgT120I	GGNCC	2 cut(s)	290, 391
BmiI	GGNNCC	3 cut(s)	609, 913, 926
BmrI	ACTGGG	2 cut(s)	257, 407
BmsI	GCATC	3 cut(s)	503, 520, 953
BmuI	ACTGGG	2 cut(s)	257, 407
BpmI	CTGGAG	1 cut(s)	825
Bpu10I	CCTNAGC	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	1192
BsaHI	GRCGYC	1 cut(s)	1083
BsaJI	CCNNGG	3 cut(s)	790, 928, 1054
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 573, 737, 921
Bse1I	ACTGG	5 cut(s)	263, 375, 413, 837, 948
Bse21I	CCTNAGG	1 cut(s)	896
Bse3DI	GCAATG	1 cut(s)	513
BseDI	CCNNGG	3 cut(s)	790, 928, 1054
BseGI	GGATG	5 cut(s)	58, 93, 364, 478, 944
BseLI	CCNNNNNNNGG	4 cut(s)	196, 573, 737, 921
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	5 cut(s)	182, 183, 556, 642, 774
BseNI	ACTGG	5 cut(s)	263, 375, 413, 837, 948
BseRI	GAGGAG	3 cut(s)	58, 720, 945
BseXI	GCAGC	4 cut(s)	136, 760, 812, 892
BseYI	CCCAGC	1 cut(s)	1030
BsgI	GTGCAG	2 cut(s)	143, 875
BshFI	GGCC	3 cut(s)	200, 393, 1146
BsiHKAI	GWGCWC	1 cut(s)	789
BslFI	GGGAC	2 cut(s)	460, 1127
BslI	CCNNNNNNNGG	4 cut(s)	196, 573, 737, 921
BsmAI	GTCTC	1 cut(s)	372
BsmFI	GGGAC	2 cut(s)	460, 1127
BsnI	GGCC	3 cut(s)	200, 393, 1146
Bsp1286I	GDGCHC	1 cut(s)	789
Bsp143I	GATC	2 cut(s)	430, 640
Bsp19I	CCATGG	1 cut(s)	1054
BspACI	CCGC	1 cut(s)	1147
BspANI	GGCC	3 cut(s)	200, 393, 1146
BspCNI	CTCAG	5 cut(s)	181, 184, 555, 641, 775
BspHI	TCATGA	1 cut(s)	865
BspLI	GGNNCC	3 cut(s)	609, 913, 926
BspMAI	CTGCAG	1 cut(s)	910
BspMI	ACCTGC	2 cut(s)	537, 851
BsrBI	CCGCTC	1 cut(s)	1149
BsrDI	GCAATG	1 cut(s)	513
BsrI	ACTGG	5 cut(s)	263, 375, 413, 837, 948
BssECI	CCNNGG	3 cut(s)	790, 928, 1054
BssMI	GATC	2 cut(s)	430, 640
BssNI	GRCGYC	1 cut(s)	1083
BssT1I	CCWWGG	2 cut(s)	790, 1054
Bst4CI	ACNGT	4 cut(s)	365, 383, 463, 595
Bst6I	CTCTTC	1 cut(s)	542
BstACI	GRCGYC	1 cut(s)	1083
BstC8I	GCNNGC	2 cut(s)	858, 1173
BstDEI	CTNAG	6 cut(s)	168, 192, 542, 628, 783, 896
BstDSI	CCRYGG	1 cut(s)	1054
BstENI	CCTNNNNNAGG	1 cut(s)	735
BstF5I	GGATG	5 cut(s)	58, 93, 364, 478, 944
BstKTI	GATC	2 cut(s)	433, 643
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	2 cut(s)	430, 640
BstMWI	GCNNNNNNNGC	3 cut(s)	911, 1155, 1203
BstSFI	CTRYAG	1 cut(s)	906
BstV1I	GCAGC	4 cut(s)	136, 760, 812, 892
BstXI	CCANNNNNNTGG	1 cut(s)	415
Bsu36I	CCTNAGG	1 cut(s)	896
BsuRI	GGCC	3 cut(s)	200, 393, 1146
BtgI	CCRYGG	1 cut(s)	1054
BtgZI	GCGATG	1 cut(s)	111
BtrI	CACGTC	1 cut(s)	874
BtsCI	GGATG	5 cut(s)	58, 93, 364, 478, 944
BtsIMutI	CAGTG	4 cut(s)	270, 420, 591, 955
BveI	ACCTGC	2 cut(s)	537, 851
Cac8I	GCNNGC	2 cut(s)	858, 1173
CaiI	CAGNNNCTG	1 cut(s)	244
CciI	TCATGA	1 cut(s)	865
Cfr13I	GGNCC	2 cut(s)	290, 391
Csp6I	GTAC	2 cut(s)	307, 438
CviAII	CATG	6 cut(s)	84, 498, 509, 734, 866, 1055
CviQI	GTAC	2 cut(s)	307, 438
DdeI	CTNAG	6 cut(s)	168, 192, 542, 628, 783, 896
DpnI	GATC	2 cut(s)	432, 642
DpnII	GATC	2 cut(s)	430, 640
DraI	TTTAAA	1 cut(s)	1182
DraIII	CACNNNGTG	1 cut(s)	563
EaeI	YGGCCR	1 cut(s)	1144
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
Ecl136II	GAGCTC	1 cut(s)	787
Eco130I	CCWWGG	2 cut(s)	790, 1054
Eco24I	GRGCYC	1 cut(s)	789
Eco47I	GGWCC	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	787
Eco57I	CTGAAG	2 cut(s)	266, 302
Eco81I	CCTNAGG	1 cut(s)	896
EcoICRI	GAGCTC	1 cut(s)	787
EcoNI	CCTNNNNNAGG	1 cut(s)	735
EcoT14I	CCWWGG	2 cut(s)	790, 1054
EcoT38I	GRGCYC	1 cut(s)	789
ErhI	CCWWGG	2 cut(s)	790, 1054
FaeI	CATG	6 cut(s)	87, 501, 512, 737, 869, 1058
FaqI	GGGAC	2 cut(s)	460, 1127
FatI	CATG	6 cut(s)	83, 497, 508, 733, 865, 1054
FblI	GTMKAC	1 cut(s)	367
Fnu4HI	GCNGC	5 cut(s)	125, 774, 801, 906, 1147
FokI	GGATG	5 cut(s)	65, 100, 371, 465, 931
FriOI	GRGCYC	1 cut(s)	789
Fsp4HI	GCNGC	5 cut(s)	125, 774, 801, 906, 1147
FspBI	CTAG	3 cut(s)	93, 209, 426
GluI	GCNGC	5 cut(s)	125, 774, 801, 906, 1147
GsaI	CCCAGC	1 cut(s)	1034
GsuI	CTGGAG	1 cut(s)	825
HaeIII	GGCC	3 cut(s)	200, 393, 1146
Hin1I	GRCGYC	1 cut(s)	1083
Hin1II	CATG	6 cut(s)	87, 501, 512, 737, 869, 1058
HincII	GTYRAC	1 cut(s)	368
HindII	GTYRAC	1 cut(s)	368
HindIII	AAGCTT	2 cut(s)	297, 844
HinfI	GANTC	6 cut(s)	341, 352, 404, 554, 580, 807
HphI	GGTGA	2 cut(s)	446, 1010
Hpy166II	GTNNAC	1 cut(s)	368
Hpy188I	TCNGA	4 cut(s)	321, 631, 929, 1027
Hpy188III	TCNNGA	7 cut(s)	239, 356, 466, 527, 866, 1105, 1209
Hpy8I	GTNNAC	1 cut(s)	368
Hpy99I	CGWCG	3 cut(s)	875, 1085, 1206
HpyAV	CCTTC	8 cut(s)	43, 56, 190, 241, 598, 830, 1001, 1161
HpyCH4III	ACNGT	4 cut(s)	365, 383, 463, 595
HpyCH4IV	ACGT	4 cut(s)	562, 873, 1083, 1201
HpyCH4V	TGCA	5 cut(s)	124, 856, 908, 1000, 1197
HpyF10VI	GCNNNNNNNGC	3 cut(s)	911, 1155, 1203
HpyF3I	CTNAG	6 cut(s)	168, 192, 542, 628, 783, 896
HpySE526I	ACGT	4 cut(s)	562, 873, 1083, 1201
Hsp92I	GRCGYC	1 cut(s)	1083
Hsp92II	CATG	6 cut(s)	87, 501, 512, 737, 869, 1058
Kzo9I	GATC	2 cut(s)	430, 640
LmnI	GCTCC	5 cut(s)	241, 613, 652, 792, 911
Lsp1109I	GCAGC	4 cut(s)	136, 760, 812, 892
LweI	GCATC	3 cut(s)	503, 520, 953
MaeI	CTAG	3 cut(s)	93, 209, 426
MaeII	ACGT	4 cut(s)	562, 873, 1083, 1201
MaeIII	GTNAC	2 cut(s)	555, 778
MalI	GATC	2 cut(s)	432, 642
MbiI	CCGCTC	1 cut(s)	1149
MboI	GATC	2 cut(s)	430, 640
MboII	GAAGA	7 cut(s)	45, 124, 178, 308, 443, 529, 1176
MfeI	CAATTG	1 cut(s)	759
MhlI	GDGCHC	1 cut(s)	789
MluCI	AATT	8 cut(s)	324, 333, 443, 667, 759, 822, 1014, 1108
MlyI	GAGTC	3 cut(s)	563, 574, 816
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	9 cut(s)	36, 39, 322, 551, 741, 923, 925, 979, 1031
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	4 cut(s)	252, 713, 1013, 1181
MslI	CAYNNNNRTG	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	803
MunI	CAATTG	1 cut(s)	759
MwoI	GCNNNNNNNGC	3 cut(s)	911, 1155, 1203
NcoI	CCATGG	1 cut(s)	1054
NdeII	GATC	2 cut(s)	430, 640
NlaIII	CATG	6 cut(s)	87, 501, 512, 737, 869, 1058
NlaIV	GGNNCC	3 cut(s)	609, 913, 926
NmeAIII	GCCGAG	1 cut(s)	592
NmuCI	GTSAC	1 cut(s)	555
PagI	TCATGA	1 cut(s)	865
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	341, 352, 404
PkrI	GCNGC	5 cut(s)	126, 775, 802, 907, 1148
PleI	GAGTC	3 cut(s)	562, 574, 815
PpsI	GAGTC	3 cut(s)	562, 574, 815
PsiI	TTATAA	1 cut(s)	224
Psp124BI	GAGCTC	1 cut(s)	789
PspFI	CCCAGC	1 cut(s)	1030
PspN4I	GGNNCC	3 cut(s)	609, 913, 926
PspPI	GGNCC	2 cut(s)	290, 391
PstI	CTGCAG	1 cut(s)	910
PstNI	CAGNNNCTG	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	2 cut(s)	308, 439
RsaNI	GTAC	2 cut(s)	307, 438
RseI	CAYNNNNRTG	1 cut(s)	399
SacI	GAGCTC	1 cut(s)	789
SalI	GTCGAC	1 cut(s)	366
SaqAI	TTAA	4 cut(s)	252, 713, 1013, 1181
SatI	GCNGC	5 cut(s)	125, 774, 801, 906, 1147
Sau3AI	GATC	2 cut(s)	430, 640
Sau96I	GGNCC	2 cut(s)	290, 391
SchI	GAGTC	3 cut(s)	563, 574, 816
SduI	GDGCHC	1 cut(s)	789
SfaNI	GCATC	3 cut(s)	503, 520, 953
SfcI	CTRYAG	1 cut(s)	906
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	1207
SmoI	CTYRAG	1 cut(s)	1207
SpeI	ACTAGT	1 cut(s)	425
Sse9I	AATT	8 cut(s)	324, 333, 443, 667, 759, 822, 1014, 1108
SsiI	CCGC	1 cut(s)	1147
SspI	AATATT	1 cut(s)	980
SspMI	CTAG	3 cut(s)	93, 209, 426
SstI	GAGCTC	1 cut(s)	789
StyI	CCWWGG	2 cut(s)	790, 1054
TaaI	ACNGT	4 cut(s)	365, 383, 463, 595
TaiI	ACGT	4 cut(s)	565, 876, 1086, 1204
TaqI	TCGA	5 cut(s)	344, 367, 552, 1080, 1104
TaqII	GACCGA	1 cut(s)	1055
TasI	AATT	8 cut(s)	324, 333, 443, 667, 759, 822, 1014, 1108
TauI	GCSGC	1 cut(s)	1149
TfiI	GAWTC	3 cut(s)	341, 352, 404
Tru1I	TTAA	4 cut(s)	252, 713, 1013, 1181
Tru9I	TTAA	4 cut(s)	252, 713, 1013, 1181
TscAI	CASTG	4 cut(s)	270, 420, 598, 955
TseFI	GTSAC	1 cut(s)	555
TseI	GCWGC	4 cut(s)	124, 773, 800, 905
Tsp45I	GTSAC	1 cut(s)	555
TspDTI	ATGAA	3 cut(s)	243, 617, 1020
TspGWI	ACGGA	2 cut(s)	600, 999
TspRI	CASTG	4 cut(s)	270, 420, 598, 955
VpaK11BI	GGWCC	1 cut(s)	290
XagI	CCTNNNNNAGG	1 cut(s)	735
XapI	RAATTY	2 cut(s)	333, 443
XmiI	GTMKAC	1 cut(s)	367
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	3 cut(s)	93, 209, 426
ZraI	GACGTC	1 cut(s)	1084

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.